Wall clock time and date at job start Tue Mar 31 2020 23:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47056 * 269.99669 * 3 2 1 5 5 H 1.48498 * 109.47083 * 29.99760 * 3 2 1 6 6 H 1.48498 * 109.47120 * 149.99524 * 3 2 1 7 7 C 1.38817 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00348 * 0.02562 * 7 2 1 10 10 C 1.47155 * 125.59640 * 359.97383 * 9 7 2 11 11 C 1.54630 * 107.33844 * 179.05917 * 10 9 7 12 12 C 1.53461 * 102.74871 * 339.34364 * 11 10 9 13 13 C 1.53500 * 111.81568 * 272.83887 * 12 11 10 14 14 C 1.55443 * 101.29552 * 204.12929 * 13 12 11 15 15 N 1.47584 * 104.91186 * 35.63463 * 14 13 12 16 16 C 1.34774 * 125.67336 * 156.08664 * 15 14 13 17 17 O 1.21667 * 119.99544 * 185.15929 * 16 15 14 18 18 C 1.46929 * 120.00317 * 5.17092 * 16 15 14 19 19 C 1.36472 * 126.72883 * 24.51863 * 18 16 15 20 20 N 1.35355 * 109.77948 * 179.97438 * 19 18 16 21 21 H 0.96995 * 124.82813 * 179.97438 * 20 19 18 22 22 C 1.37867 * 110.34799 * 0.02562 * 20 19 18 23 23 C 1.39225 * 133.47831 * 180.02562 * 22 20 19 24 24 C 1.38335 * 118.30031 * 179.97438 * 23 22 20 25 25 C 1.38608 * 119.64055 * 0.27627 * 24 23 22 26 26 N 1.31633 * 121.18884 * 359.39635 * 25 24 23 27 27 C 1.32684 * 121.42971 * 0.63670 * 26 25 24 28 28 C 1.47444 * 108.64345 * 335.82887 * 15 14 13 29 29 C 1.47750 * 125.60107 * 179.97438 * 9 7 2 30 30 H 0.96997 * 120.00312 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87108 * 59.62622 * 10 9 7 32 32 H 1.08997 * 109.98867 * 298.56825 * 10 9 7 33 33 H 1.09004 * 110.75678 * 221.02082 * 11 10 9 34 34 H 1.09004 * 110.91116 * 97.73000 * 11 10 9 35 35 H 1.09003 * 111.04033 * 322.33931 * 13 12 11 36 36 H 1.09000 * 111.04306 * 86.23639 * 13 12 11 37 37 H 1.08995 * 110.47180 * 276.73977 * 14 13 12 38 38 H 1.09002 * 110.30104 * 154.43909 * 14 13 12 39 39 H 1.08004 * 125.11209 * 359.97438 * 19 18 16 40 40 H 1.08003 * 120.84945 * 359.97361 * 23 22 20 41 41 H 1.07994 * 120.18135 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.39920 * 179.70506 * 25 24 23 43 43 H 1.09001 * 109.99633 * 121.80059 * 28 15 14 44 44 H 1.09008 * 109.99477 * 243.09019 * 28 15 14 45 45 H 1.09002 * 110.39174 * 83.56900 * 29 9 7 46 46 H 1.09003 * 110.39882 * 321.17107 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1390 -2.5316 0.0005 11 6 -0.4537 -4.0454 -0.0237 12 6 0.8478 -4.6532 -0.5638 13 6 0.8661 -4.6907 -2.0982 14 6 1.8739 -5.8443 -2.3626 15 7 1.6311 -6.8165 -1.2791 16 6 1.9155 -8.1330 -1.3261 17 8 1.5860 -8.8597 -0.4076 18 6 2.6236 -8.6908 -2.4864 19 6 3.4488 -8.0176 -3.3398 20 7 3.9175 -8.8638 -4.2866 21 1 4.5215 -8.6137 -5.0032 22 6 3.4133 -10.1316 -4.0884 23 6 3.5735 -11.3417 -4.7580 24 6 2.9027 -12.4515 -4.2763 25 6 2.0939 -12.3314 -3.1571 26 7 1.9596 -11.1799 -2.5335 27 6 2.5817 -10.0871 -2.9570 28 6 1.0314 -6.1065 -0.1344 29 6 1.9359 -3.7337 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5583 -2.0519 -0.8839 32 1 -0.5576 -2.0805 0.9002 33 1 -1.2863 -4.2562 -0.6949 34 1 -0.6653 -4.4149 0.9797 35 1 -0.1204 -4.9294 -2.4957 36 1 1.2336 -3.7501 -2.5084 37 1 2.8980 -5.4739 -2.3165 38 1 1.6791 -6.3018 -3.3326 39 1 3.6915 -6.9675 -3.2703 40 1 4.2052 -11.4122 -5.6311 41 1 3.0054 -13.4055 -4.7719 42 1 1.5682 -13.1993 -2.7872 43 1 0.0655 -6.5470 0.1129 44 1 1.6967 -6.1599 0.7274 45 1 2.1970 -4.0323 1.0158 46 1 2.8176 -3.7509 -0.6400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041786446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:13 Heat of formation + Delta-G solvation = 50.668883 kcal Electronic energy + Delta-G solvation = -29150.395160 eV Core-core repulsion = 25233.398645 eV Total energy + Delta-G solvation = -3916.996515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.71169 -41.30714 -39.51956 -38.83009 -37.08354 -34.52112 -33.75912 -32.17162 -31.18230 -30.80847 -30.63274 -29.55655 -27.37379 -25.71096 -24.86191 -24.18683 -23.48004 -22.83239 -22.07381 -20.33538 -20.02855 -18.94897 -18.67765 -17.99268 -17.38649 -17.17695 -16.90240 -16.71533 -16.20630 -15.92680 -15.78582 -15.64350 -15.48858 -14.95063 -14.50509 -14.15760 -13.94747 -13.89227 -13.82044 -13.66347 -13.57978 -13.57234 -13.23708 -12.96095 -12.88968 -12.73914 -12.54157 -12.39848 -12.00605 -11.75047 -11.51223 -11.40619 -11.32411 -11.20944 -11.02679 -10.65137 -10.21190 -9.68076 -9.49665 -9.16544 -8.84677 -7.80117 -5.15007 -0.07276 0.31427 1.00087 1.48875 1.50617 1.58992 1.85155 2.02267 2.29057 2.52909 2.99410 3.27936 3.35849 3.44333 3.59969 3.65133 3.70327 3.80180 3.92839 4.01701 4.13949 4.23045 4.27240 4.28544 4.41735 4.43743 4.60170 4.62555 4.66648 4.72113 4.78500 4.80119 4.90710 5.04580 5.07285 5.08595 5.15202 5.23217 5.25382 5.34649 5.39698 5.42173 5.50904 5.71308 5.82778 5.87779 6.23597 6.43735 6.57873 7.14741 7.18787 7.26077 7.82022 8.47304 9.30271 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.002340 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.079543 B =11960.467441 C =12617.146079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.235 4.235 8 H 0.084 0.916 9 N -0.622 5.622 10 C 0.191 3.809 11 C -0.120 4.120 12 C -0.071 4.071 13 C -0.106 4.106 14 C 0.099 3.901 15 N -0.614 5.614 16 C 0.598 3.402 17 O -0.587 6.587 18 C -0.261 4.261 19 C 0.159 3.841 20 N -0.549 5.549 21 H 0.446 0.554 22 C 0.027 3.973 23 C -0.068 4.068 24 C -0.154 4.154 25 C 0.083 3.917 26 N -0.499 5.499 27 C 0.095 3.905 28 C 0.134 3.866 29 C 0.150 3.850 30 H 0.245 0.755 31 H 0.017 0.983 32 H 0.000 1.000 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.224 0.776 40 H 0.177 0.823 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.015 0.985 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.797 -21.942 -16.795 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.364 4.364 8 H 0.102 0.898 9 N -0.349 5.349 10 C 0.066 3.934 11 C -0.158 4.158 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.022 4.022 15 N -0.347 5.347 16 C 0.390 3.610 17 O -0.468 6.468 18 C -0.273 4.273 19 C 0.022 3.978 20 N -0.152 5.152 21 H 0.289 0.711 22 C -0.081 4.081 23 C -0.096 4.096 24 C -0.175 4.175 25 C -0.082 4.082 26 N -0.208 5.208 27 C -0.038 4.038 28 C 0.011 3.989 29 C 0.025 3.975 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.019 0.981 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.241 0.759 40 H 0.194 0.806 41 H 0.197 0.803 42 H 0.191 0.809 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.033 0.967 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.178 -22.054 -15.659 28.562 hybrid contribution 0.518 1.332 -0.108 1.433 sum 9.696 -20.722 -15.768 27.785 Atomic orbital electron populations 1.70187 1.06286 1.25087 1.58596 1.25615 0.96534 1.00910 1.02986 0.85110 0.77556 0.79347 0.77508 1.21019 1.22679 1.19526 1.19442 0.91007 0.83549 1.42390 0.89775 1.44835 1.02195 1.00910 1.86929 1.20901 0.83858 0.90998 0.97662 1.22580 0.96577 0.95677 1.01001 1.21388 0.96410 0.92236 0.97175 1.22527 1.00155 0.98631 0.93085 1.22855 1.00194 0.88355 0.90840 1.48514 1.62013 1.06696 1.17489 1.17218 0.78281 0.79858 0.85657 1.90771 1.56095 1.59382 1.40562 1.19787 1.12088 0.92726 1.02698 1.22859 0.91777 0.97185 0.85968 1.41360 1.41320 1.05595 1.26942 0.71117 1.19245 1.00801 0.88761 0.99257 1.21045 1.00062 0.88246 1.00245 1.22306 0.97221 1.00630 0.97323 1.23243 0.97247 0.94418 0.93319 1.67020 1.22416 0.99421 1.31957 1.19828 0.97207 0.92352 0.94435 1.21548 0.98145 0.90168 0.89033 1.21460 0.94808 0.84147 0.97068 0.94577 0.96458 0.98145 0.89931 0.91654 0.90111 0.89820 0.88778 0.87971 0.75944 0.80609 0.80285 0.80914 0.91933 0.92051 0.96725 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.69 10.30 21.65 0.22 -56.47 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 3 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.23 -12.72 10.28 84.04 0.86 -11.85 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.62 -30.74 3.41 -693.48 -2.36 -33.10 16 10 C 0.19 9.26 5.35 86.81 0.46 9.72 16 11 C -0.12 -4.36 5.85 31.30 0.18 -4.18 16 12 C -0.07 -2.27 0.61 -51.90 -0.03 -2.31 16 13 C -0.11 -2.81 5.99 31.60 0.19 -2.62 16 14 C 0.10 2.00 5.13 87.01 0.45 2.45 16 15 N -0.61 -17.31 3.34 -816.90 -2.73 -20.04 16 16 C 0.60 19.93 7.79 86.52 0.67 20.61 16 17 O -0.59 -25.54 17.38 -4.24 -0.07 -25.61 16 18 C -0.26 -6.84 5.94 -19.00 -0.11 -6.96 16 19 C 0.16 2.24 10.04 83.74 0.84 3.08 16 20 N -0.55 -5.41 5.98 -187.00 -1.12 -6.53 16 21 H 0.45 0.33 8.96 -92.71 -0.83 -0.50 16 22 C 0.03 0.46 7.27 38.98 0.28 0.74 16 23 C -0.07 -0.73 10.19 22.53 0.23 -0.50 16 24 C -0.15 -1.79 10.09 22.38 0.23 -1.57 16 25 C 0.08 1.64 11.16 84.81 0.95 2.59 16 26 N -0.50 -15.10 10.41 -184.61 -1.92 -17.02 16 27 C 0.09 2.60 7.43 41.98 0.31 2.91 16 28 C 0.13 4.19 6.14 86.08 0.53 4.72 16 29 C 0.15 5.79 6.10 86.22 0.53 6.32 16 30 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.02 0.93 7.39 -2.39 -0.02 0.91 16 32 H 0.00 0.02 7.50 -2.39 -0.02 0.00 16 33 H 0.08 2.69 7.80 -2.38 -0.02 2.67 16 34 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 35 H 0.08 2.04 7.85 -2.39 -0.02 2.02 16 36 H 0.08 2.45 8.00 -2.39 -0.02 2.43 16 37 H 0.09 1.47 7.29 -2.39 -0.02 1.45 16 38 H 0.10 1.53 6.93 -2.39 -0.02 1.52 16 39 H 0.22 1.50 5.80 -2.91 -0.02 1.48 16 40 H 0.18 0.37 8.06 -2.91 -0.02 0.34 16 41 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 42 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.06 2.05 7.89 -2.39 -0.02 2.03 16 44 H 0.06 2.01 7.62 -2.38 -0.02 2.00 16 45 H 0.01 0.60 7.79 -2.39 -0.02 0.58 16 46 H 0.06 1.95 7.96 -2.39 -0.02 1.93 16 Total: -1.00 -87.74 369.68 1.27 -86.47 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.19 Total: 5.51 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 7.03 Total: 19.84 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -7.91 Total: -133.16 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.07 Total: -25.61 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -87.74 1.27 -86.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041786446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.140 kcal (2) G-P(sol) polarization free energy of solvation -87.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds