Wall clock time and date at job start Tue Mar 31 2020 23:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48501 * 109.47225 * 274.98101 * 3 2 1 5 5 H 1.48507 * 109.47049 * 34.97913 * 3 2 1 6 6 H 1.48494 * 109.47038 * 154.97787 * 3 2 1 7 7 C 1.38812 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99647 * 154.02268 * 7 2 1 9 9 N 1.36934 * 120.00120 * 334.01528 * 7 2 1 10 10 C 1.47563 * 125.67271 * 335.85458 * 9 7 2 11 11 C 1.55177 * 105.00564 * 203.85858 * 10 9 7 12 12 C 1.53654 * 101.41620 * 324.50161 * 11 10 9 13 13 C 1.53723 * 111.47135 * 155.06447 * 12 11 10 14 14 C 1.55183 * 101.44439 * 154.97149 * 13 12 11 15 15 N 1.47568 * 105.00773 * 324.53088 * 14 13 12 16 16 C 1.34774 * 125.67521 * 203.84334 * 15 14 13 17 17 O 1.21668 * 119.99717 * 174.81753 * 16 15 14 18 18 C 1.46926 * 119.99925 * 354.81923 * 16 15 14 19 19 C 1.36348 * 126.82788 * 352.71629 * 18 16 15 20 20 N 1.35578 * 109.74901 * 179.83238 * 19 18 16 21 21 H 0.97006 * 124.71956 * 180.18520 * 20 19 18 22 22 C 1.37696 * 110.55910 * 0.45086 * 20 19 18 23 23 N 1.32675 * 132.95099 * 179.71385 * 22 20 19 24 24 C 1.31599 * 121.69438 * 180.02562 * 23 22 20 25 25 C 1.38585 * 121.54246 * 359.97022 * 24 23 22 26 26 C 1.38341 * 119.32518 * 0.04686 * 25 24 23 27 27 C 1.39350 * 118.05152 * 359.95887 * 26 25 24 28 28 C 1.47401 * 108.64926 * 23.86080 * 15 14 13 29 29 C 1.47397 * 125.67632 * 155.85426 * 9 7 2 30 30 H 0.97007 * 120.00389 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.33742 * 322.74478 * 10 9 7 32 32 H 1.09005 * 110.33166 * 84.87205 * 10 9 7 33 33 H 1.09005 * 111.03878 * 206.47378 * 11 10 9 34 34 H 1.08996 * 111.03990 * 82.53527 * 11 10 9 35 35 H 1.09000 * 111.00389 * 36.93605 * 13 12 11 36 36 H 1.09002 * 111.07190 * 273.03926 * 13 12 11 37 37 H 1.08994 * 110.33328 * 205.65076 * 14 13 12 38 38 H 1.08998 * 110.42591 * 83.45503 * 14 13 12 39 39 H 1.08000 * 125.12645 * 359.97438 * 19 18 16 40 40 H 1.07999 * 119.23140 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.34136 * 180.02562 * 25 24 23 42 42 H 1.07994 * 120.97490 * 179.97438 * 26 25 24 43 43 H 1.09007 * 109.98784 * 117.22937 * 28 15 14 44 44 H 1.09002 * 109.99101 * 238.49352 * 28 15 14 45 45 H 1.09007 * 109.98611 * 58.54994 * 29 9 7 46 46 H 1.08999 * 109.98669 * 297.24638 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5041 2.6201 0.8027 6 1 3.5963 1.4122 0.5922 7 6 2.0103 -1.2021 -0.0005 8 1 3.0084 -1.2491 -0.4103 9 7 1.4294 -2.3283 0.5185 10 6 0.3511 -2.3544 1.5254 11 6 0.4747 -3.7412 2.2107 12 6 0.9077 -4.6257 1.0313 13 6 1.6764 -5.8673 1.5117 14 6 1.4237 -6.8570 0.3434 15 7 0.0497 -6.5687 -0.1112 16 6 -0.7585 -7.4269 -0.7644 17 8 -1.9084 -7.1134 -1.0088 18 6 -0.2508 -8.7412 -1.1813 19 6 1.0374 -9.1813 -1.1055 20 7 1.1175 -10.4480 -1.5821 21 1 1.9333 -10.9712 -1.6262 22 6 -0.1190 -10.8865 -2.0002 23 7 -0.5415 -12.0256 -2.5331 24 6 -1.8034 -12.2112 -2.8572 25 6 -2.7559 -11.2247 -2.6571 26 6 -2.3732 -10.0154 -2.1048 27 6 -1.0315 -9.8431 -1.7703 28 6 -0.2917 -5.1857 0.2677 29 6 1.7774 -3.7162 0.1644 30 1 -0.4851 0.8401 0.0004 31 1 0.4945 -1.5572 2.2549 32 1 -0.6209 -2.2542 1.0422 33 1 -0.4853 -4.0664 2.6118 34 1 1.2373 -3.7263 2.9893 35 1 1.2598 -6.2481 2.4442 36 1 2.7396 -5.6525 1.6195 37 1 1.4980 -7.8857 0.6958 38 1 2.1343 -6.6816 -0.4642 39 1 1.8683 -8.6082 -0.7215 40 1 -2.1038 -13.1544 -3.2890 41 1 -3.7864 -11.3980 -2.9298 42 1 -3.0933 -9.2281 -1.9377 43 1 -0.4759 -4.5892 -0.6259 44 1 -1.1749 -5.1815 0.9065 45 1 2.8316 -3.9005 0.3719 46 1 1.5681 -3.8953 -0.8902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041836140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:23 Heat of formation + Delta-G solvation = 79.210855 kcal Electronic energy + Delta-G solvation = -29174.033164 eV Core-core repulsion = 25258.274322 eV Total energy + Delta-G solvation = -3915.758842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.97891 -40.15559 -38.36485 -37.92254 -35.67028 -33.18127 -32.74236 -30.93994 -30.38562 -29.89799 -29.26623 -27.93221 -25.79697 -24.63227 -24.05938 -22.89986 -22.54964 -21.95553 -20.44568 -19.41915 -18.81805 -18.27049 -17.20182 -16.78389 -16.29136 -16.07652 -15.99187 -15.43057 -15.15539 -14.74858 -14.64833 -14.34717 -13.97434 -13.67837 -13.46942 -13.31913 -13.20519 -12.79563 -12.63279 -12.55907 -12.26443 -12.18744 -12.00214 -11.59092 -11.42618 -11.32324 -10.87924 -10.72223 -10.60687 -10.26311 -10.18816 -10.02962 -9.99412 -9.86600 -9.77933 -9.56111 -8.83402 -8.58219 -8.49298 -8.34023 -6.72166 -5.81174 -3.16068 0.63156 1.05144 1.79381 2.35114 3.02292 3.33136 3.37526 3.45497 3.48398 3.70838 4.16665 4.29430 4.37388 4.47560 4.57873 4.69263 4.76099 4.87277 4.92249 4.96876 5.18520 5.22970 5.25423 5.31741 5.36983 5.39603 5.58522 5.70919 5.74959 5.92187 5.96731 5.98226 6.07450 6.09826 6.15492 6.20911 6.32175 6.34828 6.45083 6.55800 6.57231 6.72857 6.81521 6.84503 7.16099 7.49556 7.62470 7.68562 7.77285 8.25421 8.31041 9.09833 9.77104 10.51540 11.28257 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.002343 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.925634 B =11949.028964 C =12247.314543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.006 3.994 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.160 3.840 11 C -0.126 4.126 12 C -0.080 4.080 13 C -0.117 4.117 14 C 0.088 3.912 15 N -0.613 5.613 16 C 0.600 3.400 17 O -0.541 6.541 18 C -0.208 4.208 19 C 0.105 3.895 20 N -0.567 5.567 21 H 0.424 0.576 22 C 0.276 3.724 23 N -0.498 5.498 24 C 0.135 3.865 25 C -0.198 4.198 26 C -0.017 4.017 27 C -0.109 4.109 28 C 0.130 3.870 29 C 0.147 3.853 30 H 0.254 0.746 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.197 0.803 40 H 0.162 0.838 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.027 0.973 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 -24.131 0.317 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.194 4.194 3 Si 0.726 3.274 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.035 3.965 11 C -0.165 4.165 12 C -0.081 4.081 13 C -0.156 4.156 14 C -0.035 4.035 15 N -0.347 5.347 16 C 0.391 3.609 17 O -0.419 6.419 18 C -0.219 4.219 19 C -0.027 4.027 20 N -0.172 5.172 21 H 0.262 0.738 22 C 0.044 3.956 23 N -0.211 5.211 24 C -0.030 4.030 25 C -0.219 4.219 26 C -0.044 4.044 27 C -0.116 4.116 28 C 0.009 3.991 29 C 0.022 3.978 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.214 0.786 40 H 0.179 0.821 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.392 -24.491 -0.025 24.530 hybrid contribution 0.257 1.361 0.018 1.385 sum 1.649 -23.130 -0.007 23.188 Atomic orbital electron populations 1.70131 1.05450 1.25708 1.52066 1.24929 0.95023 0.98463 1.00953 0.86384 0.79503 0.83924 0.77634 1.21477 1.21525 1.20383 1.18779 0.96168 0.85376 1.37134 0.91297 1.44556 1.42961 0.99602 1.44761 1.21426 0.92910 0.91816 0.90336 1.22736 1.00213 0.97683 0.95843 1.21530 0.95020 0.94594 0.96965 1.22692 1.01401 0.94435 0.97029 1.22747 0.83925 0.99475 0.97372 1.48472 1.14983 1.14244 1.56973 1.16760 0.84510 0.82262 0.77409 1.90783 1.17356 1.77181 1.56599 1.19979 0.92886 0.95733 1.13282 1.22942 0.98856 0.84307 0.96597 1.41373 1.08554 1.13588 1.53700 0.73783 1.18369 0.85865 0.91611 0.99726 1.66481 1.18850 1.21173 1.14624 1.22456 0.86281 0.98943 0.95343 1.21977 1.01429 0.94533 1.03982 1.21190 0.94102 0.96984 0.92100 1.19425 0.94301 0.93977 1.03876 1.21875 0.97247 0.80158 0.99845 1.21222 0.95219 0.85993 0.95393 0.93653 0.94119 0.94245 0.91721 0.91448 0.90486 0.89388 0.90536 0.90852 0.78613 0.82088 0.84233 0.83689 0.90466 0.91200 0.95499 0.95770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 12.22 55.49 0.68 -25.54 16 2 C 0.01 0.18 5.17 -17.43 -0.09 0.09 16 3 Si 0.90 21.64 29.63 -169.99 -5.04 16.61 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.78 10.04 -15.06 -0.15 -6.93 16 8 H 0.07 1.86 7.95 -52.49 -0.42 1.44 16 9 N -0.59 -14.64 3.36 -170.41 -0.57 -15.21 16 10 C 0.16 3.66 5.64 -2.31 -0.01 3.65 16 11 C -0.13 -2.13 6.04 -25.24 -0.15 -2.28 16 12 C -0.08 -1.26 0.60 -153.98 -0.09 -1.35 16 13 C -0.12 -1.31 6.04 -25.20 -0.15 -1.46 16 14 C 0.09 0.88 5.09 -2.30 -0.01 0.87 16 15 N -0.61 -8.70 3.34 -172.30 -0.58 -9.27 16 16 C 0.60 9.44 7.82 -12.74 -0.10 9.34 16 17 O -0.54 -10.47 16.63 5.22 0.09 -10.38 16 18 C -0.21 -2.67 6.20 -103.36 -0.64 -3.31 16 19 C 0.10 0.92 10.19 -16.58 -0.17 0.75 16 20 N -0.57 -4.77 5.97 -11.97 -0.07 -4.84 16 21 H 0.42 2.16 8.96 -40.82 -0.37 1.79 16 22 C 0.28 3.20 8.41 -155.52 -1.31 1.90 16 23 N -0.50 -5.62 10.39 -12.29 -0.13 -5.75 16 24 C 0.14 1.23 11.14 -17.52 -0.20 1.03 16 25 C -0.20 -1.82 10.11 -39.42 -0.40 -2.22 16 26 C -0.02 -0.21 9.98 -39.13 -0.39 -0.60 16 27 C -0.11 -1.43 6.28 -104.93 -0.66 -2.09 16 28 C 0.13 2.16 6.03 -3.64 -0.02 2.14 16 29 C 0.15 2.89 6.40 -3.65 -0.02 2.87 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 1.01 7.80 -51.93 -0.41 0.60 16 33 H 0.06 0.99 7.62 -51.93 -0.40 0.59 16 34 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.09 0.89 7.62 -51.93 -0.40 0.49 16 37 H 0.08 0.55 5.95 -51.93 -0.31 0.24 16 38 H 0.07 0.65 7.73 -51.93 -0.40 0.25 16 39 H 0.20 1.09 4.71 -52.49 -0.25 0.84 16 40 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.15 1.81 7.58 -52.49 -0.40 1.42 16 43 H 0.08 1.52 7.61 -51.93 -0.39 1.12 16 44 H 0.07 1.19 7.53 -51.93 -0.39 0.79 16 45 H 0.03 0.50 7.53 -51.93 -0.39 0.11 16 46 H 0.02 0.51 7.61 -51.93 -0.39 0.12 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -35.80 368.95 -10.78 -46.58 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.15 Total: -0.17 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -4.57 Total: 2.40 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.67 Total: -60.61 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.04 Total: 16.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.80 -10.78 -46.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041836140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.791 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds