Wall clock time and date at job start Tue Mar 31 2020 23:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48501 * 109.47225 * 274.98101 * 3 2 1 5 5 H 1.48507 * 109.47049 * 34.97913 * 3 2 1 6 6 H 1.48494 * 109.47038 * 154.97787 * 3 2 1 7 7 C 1.38812 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99647 * 154.02268 * 7 2 1 9 9 N 1.36934 * 120.00120 * 334.01528 * 7 2 1 10 10 C 1.47563 * 125.67271 * 335.85458 * 9 7 2 11 11 C 1.55177 * 105.00564 * 203.85858 * 10 9 7 12 12 C 1.53654 * 101.41620 * 324.50161 * 11 10 9 13 13 C 1.53723 * 111.47135 * 155.06447 * 12 11 10 14 14 C 1.55183 * 101.44439 * 154.97149 * 13 12 11 15 15 N 1.47568 * 105.00773 * 324.53088 * 14 13 12 16 16 C 1.34774 * 125.67521 * 203.84334 * 15 14 13 17 17 O 1.21668 * 119.99717 * 174.81753 * 16 15 14 18 18 C 1.46926 * 119.99925 * 354.81923 * 16 15 14 19 19 C 1.36348 * 126.82788 * 352.71629 * 18 16 15 20 20 N 1.35578 * 109.74901 * 179.83238 * 19 18 16 21 21 H 0.97006 * 124.71956 * 180.18520 * 20 19 18 22 22 C 1.37696 * 110.55910 * 0.45086 * 20 19 18 23 23 N 1.32675 * 132.95099 * 179.71385 * 22 20 19 24 24 C 1.31599 * 121.69438 * 180.02562 * 23 22 20 25 25 C 1.38585 * 121.54246 * 359.97022 * 24 23 22 26 26 C 1.38341 * 119.32518 * 0.04686 * 25 24 23 27 27 C 1.39350 * 118.05152 * 359.95887 * 26 25 24 28 28 C 1.47401 * 108.64926 * 23.86080 * 15 14 13 29 29 C 1.47397 * 125.67632 * 155.85426 * 9 7 2 30 30 H 0.97007 * 120.00389 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.33742 * 322.74478 * 10 9 7 32 32 H 1.09005 * 110.33166 * 84.87205 * 10 9 7 33 33 H 1.09005 * 111.03878 * 206.47378 * 11 10 9 34 34 H 1.08996 * 111.03990 * 82.53527 * 11 10 9 35 35 H 1.09000 * 111.00389 * 36.93605 * 13 12 11 36 36 H 1.09002 * 111.07190 * 273.03926 * 13 12 11 37 37 H 1.08994 * 110.33328 * 205.65076 * 14 13 12 38 38 H 1.08998 * 110.42591 * 83.45503 * 14 13 12 39 39 H 1.08000 * 125.12645 * 359.97438 * 19 18 16 40 40 H 1.07999 * 119.23140 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.34136 * 180.02562 * 25 24 23 42 42 H 1.07994 * 120.97490 * 179.97438 * 26 25 24 43 43 H 1.09007 * 109.98784 * 117.22937 * 28 15 14 44 44 H 1.09002 * 109.99101 * 238.49352 * 28 15 14 45 45 H 1.09007 * 109.98611 * 58.54994 * 29 9 7 46 46 H 1.08999 * 109.98669 * 297.24638 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5041 2.6201 0.8027 6 1 3.5963 1.4122 0.5922 7 6 2.0103 -1.2021 -0.0005 8 1 3.0084 -1.2491 -0.4103 9 7 1.4294 -2.3283 0.5185 10 6 0.3511 -2.3544 1.5254 11 6 0.4747 -3.7412 2.2107 12 6 0.9077 -4.6257 1.0313 13 6 1.6764 -5.8673 1.5117 14 6 1.4237 -6.8570 0.3434 15 7 0.0497 -6.5687 -0.1112 16 6 -0.7585 -7.4269 -0.7644 17 8 -1.9084 -7.1134 -1.0088 18 6 -0.2508 -8.7412 -1.1813 19 6 1.0374 -9.1813 -1.1055 20 7 1.1175 -10.4480 -1.5821 21 1 1.9333 -10.9712 -1.6262 22 6 -0.1190 -10.8865 -2.0002 23 7 -0.5415 -12.0256 -2.5331 24 6 -1.8034 -12.2112 -2.8572 25 6 -2.7559 -11.2247 -2.6571 26 6 -2.3732 -10.0154 -2.1048 27 6 -1.0315 -9.8431 -1.7703 28 6 -0.2917 -5.1857 0.2677 29 6 1.7774 -3.7162 0.1644 30 1 -0.4851 0.8401 0.0004 31 1 0.4945 -1.5572 2.2549 32 1 -0.6209 -2.2542 1.0422 33 1 -0.4853 -4.0664 2.6118 34 1 1.2373 -3.7263 2.9893 35 1 1.2598 -6.2481 2.4442 36 1 2.7396 -5.6525 1.6195 37 1 1.4980 -7.8857 0.6958 38 1 2.1343 -6.6816 -0.4642 39 1 1.8683 -8.6082 -0.7215 40 1 -2.1038 -13.1544 -3.2890 41 1 -3.7864 -11.3980 -2.9298 42 1 -3.0933 -9.2281 -1.9377 43 1 -0.4759 -4.5892 -0.6259 44 1 -1.1749 -5.1815 0.9065 45 1 2.8316 -3.9005 0.3719 46 1 1.5681 -3.8953 -0.8902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041836140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:21 Heat of formation + Delta-G solvation = 54.967857 kcal Electronic energy + Delta-G solvation = -29175.084419 eV Core-core repulsion = 25258.274322 eV Total energy + Delta-G solvation = -3916.810097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.78219 -41.35009 -39.56908 -38.82529 -37.14234 -34.57914 -33.94497 -32.41343 -31.27953 -30.92856 -30.62069 -29.26108 -27.43714 -26.04221 -24.92204 -24.00522 -23.54022 -22.91654 -22.21160 -20.43141 -20.07536 -19.19042 -18.69978 -18.03691 -17.25138 -17.07633 -16.96690 -16.69774 -16.41664 -16.07431 -15.74284 -15.72417 -15.52079 -14.77530 -14.67791 -14.49384 -14.14776 -14.05113 -13.89637 -13.81539 -13.40866 -13.32315 -13.20483 -12.94612 -12.82598 -12.76776 -12.63312 -12.34778 -12.03410 -11.86805 -11.61873 -11.47066 -11.38283 -11.34089 -11.14389 -10.58576 -10.45038 -9.75500 -9.56093 -9.19089 -8.76813 -7.92402 -5.30317 -0.17221 0.26221 0.89859 1.44369 1.46547 1.57668 1.63944 1.94836 2.31000 2.49536 2.87979 3.19675 3.38860 3.47476 3.53539 3.61246 3.64695 3.73131 3.86300 4.00814 4.12744 4.14638 4.17484 4.28092 4.40130 4.46082 4.51507 4.56801 4.65524 4.75348 4.77766 4.84217 4.92569 5.02322 5.05725 5.08807 5.17295 5.21910 5.29691 5.31103 5.34842 5.37595 5.43189 5.61617 5.63856 5.80285 6.22402 6.23782 6.54824 6.93240 7.02233 7.16981 7.73744 8.47691 9.15743 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.002343 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.925634 B =11949.028964 C =12247.314543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.053 4.053 3 Si 0.965 3.035 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.256 4.256 8 H 0.073 0.927 9 N -0.615 5.615 10 C 0.162 3.838 11 C -0.108 4.108 12 C -0.070 4.070 13 C -0.104 4.104 14 C 0.080 3.920 15 N -0.612 5.612 16 C 0.595 3.405 17 O -0.598 6.598 18 C -0.254 4.254 19 C 0.150 3.850 20 N -0.548 5.548 21 H 0.443 0.557 22 C 0.261 3.739 23 N -0.508 5.508 24 C 0.133 3.867 25 C -0.184 4.184 26 C -0.050 4.050 27 C -0.136 4.136 28 C 0.136 3.864 29 C 0.146 3.854 30 H 0.249 0.751 31 H 0.014 0.986 32 H -0.003 1.003 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.238 0.762 40 H 0.200 0.800 41 H 0.168 0.832 42 H 0.124 0.876 43 H 0.030 0.970 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 -27.459 1.210 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.249 4.249 3 Si 0.793 3.207 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.385 4.385 8 H 0.091 0.909 9 N -0.341 5.341 10 C 0.036 3.964 11 C -0.146 4.146 12 C -0.071 4.071 13 C -0.142 4.142 14 C -0.041 4.041 15 N -0.344 5.344 16 C 0.387 3.613 17 O -0.480 6.480 18 C -0.265 4.265 19 C 0.016 3.984 20 N -0.154 5.154 21 H 0.285 0.715 22 C 0.029 3.971 23 N -0.221 5.221 24 C -0.032 4.032 25 C -0.205 4.205 26 C -0.077 4.077 27 C -0.143 4.143 28 C 0.013 3.987 29 C 0.022 3.978 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.015 0.985 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.253 0.747 40 H 0.217 0.783 41 H 0.186 0.814 42 H 0.142 0.858 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 4.790 -27.883 0.872 28.305 hybrid contribution -0.812 2.318 -0.351 2.481 sum 3.978 -25.566 0.522 25.879 Atomic orbital electron populations 1.70290 1.07125 1.26023 1.54325 1.25784 0.95756 1.01834 1.01530 0.85302 0.78538 0.79462 0.77418 1.21298 1.22002 1.18863 1.19191 0.96430 0.86746 1.36146 0.90896 1.44912 1.42826 1.01121 1.45268 1.21292 0.90595 0.94847 0.89635 1.22627 1.02085 0.93583 0.96314 1.21386 0.94489 0.95848 0.95408 1.22729 1.02138 0.91291 0.98028 1.23143 0.81574 1.01574 0.97782 1.48494 1.16666 1.12674 1.56581 1.17274 0.83968 0.83278 0.76742 1.90740 1.19916 1.78475 1.58898 1.19746 0.94898 0.94799 1.17060 1.23384 0.98031 0.83867 0.93104 1.41394 1.08420 1.13427 1.52205 0.71478 1.18541 0.86717 0.91438 1.00401 1.66596 1.19839 1.20908 1.14769 1.23134 0.85556 1.00120 0.94398 1.22306 1.03013 0.93191 1.01993 1.21268 0.94110 0.98008 0.94332 1.19744 0.95093 0.94915 1.04561 1.21577 0.97735 0.81609 0.97764 1.21393 0.97200 0.84231 0.95025 0.94229 0.96800 0.98544 0.90080 0.88896 0.88425 0.86828 0.86466 0.88834 0.74651 0.78304 0.81416 0.85767 0.95171 0.92339 0.92883 0.97910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 12.22 21.65 0.26 -57.50 16 2 C -0.05 -3.05 5.17 84.86 0.44 -2.61 16 3 Si 0.97 45.59 29.63 68.60 2.03 47.62 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.26 -14.36 10.04 84.03 0.84 -13.52 16 8 H 0.07 3.94 7.95 -2.91 -0.02 3.92 16 9 N -0.62 -31.11 3.36 -693.07 -2.33 -33.43 16 10 C 0.16 7.71 5.64 86.92 0.49 8.21 16 11 C -0.11 -3.53 6.04 31.56 0.19 -3.34 16 12 C -0.07 -2.11 0.60 -51.84 -0.03 -2.14 16 13 C -0.10 -1.82 6.04 31.59 0.19 -1.63 16 14 C 0.08 1.26 5.09 86.92 0.44 1.70 16 15 N -0.61 -16.95 3.34 -817.25 -2.73 -19.68 16 16 C 0.59 19.22 7.82 86.52 0.68 19.89 16 17 O -0.60 -25.12 16.63 -4.25 -0.07 -25.19 16 18 C -0.25 -6.33 6.20 -19.05 -0.12 -6.45 16 19 C 0.15 2.10 10.19 83.67 0.85 2.95 16 20 N -0.55 -7.31 5.97 -191.79 -1.15 -8.45 16 21 H 0.44 2.57 8.96 -92.70 -0.83 1.74 16 22 C 0.26 5.57 8.41 133.76 1.13 6.69 16 23 N -0.51 -10.34 10.39 -192.80 -2.00 -12.35 16 24 C 0.13 2.12 11.14 84.81 0.95 3.06 16 25 C -0.18 -3.21 10.11 22.38 0.23 -2.99 16 26 C -0.05 -1.28 9.98 22.56 0.23 -1.05 16 27 C -0.14 -3.57 6.28 -20.06 -0.13 -3.70 16 28 C 0.14 4.68 6.03 86.15 0.52 5.20 16 29 C 0.15 5.65 6.40 86.14 0.55 6.20 16 30 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 31 H 0.01 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.00 -0.19 7.80 -2.38 -0.02 -0.21 16 33 H 0.08 2.41 7.62 -2.38 -0.02 2.39 16 34 H 0.09 2.62 8.07 -2.39 -0.02 2.60 16 35 H 0.10 1.42 8.07 -2.39 -0.02 1.40 16 36 H 0.11 1.54 7.62 -2.39 -0.02 1.52 16 37 H 0.12 0.95 5.95 -2.39 -0.01 0.93 16 38 H 0.09 1.16 7.73 -2.39 -0.02 1.14 16 39 H 0.24 1.18 4.71 -2.91 -0.01 1.17 16 40 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.12 3.53 7.58 -2.91 -0.02 3.50 16 43 H 0.03 1.30 7.61 -2.38 -0.02 1.28 16 44 H 0.06 2.11 7.53 -2.39 -0.02 2.09 16 45 H 0.05 1.81 7.53 -2.38 -0.02 1.79 16 46 H 0.00 0.12 7.61 -2.39 -0.02 0.10 16 Total: -1.00 -87.57 368.95 1.66 -85.92 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.20 Total: 6.57 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 7.44 Total: 16.48 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -7.94 Total: -131.41 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.07 Total: -25.19 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -87.57 1.66 -85.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041836140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.883 kcal (2) G-P(sol) polarization free energy of solvation -87.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds