Wall clock time and date at job start Tue Mar 31 2020 23:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99588 * 2 1 4 4 H 1.48497 * 109.47341 * 270.00453 * 3 2 1 5 5 H 1.48499 * 109.47079 * 30.00407 * 3 2 1 6 6 H 1.48505 * 109.47251 * 150.00268 * 3 2 1 7 7 C 1.38807 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00235 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.48154 * 126.39975 * 0.03195 * 9 7 2 11 11 C 1.55303 * 107.04402 * 175.01986 * 10 9 7 12 12 C 1.53698 * 101.84718 * 337.52984 * 11 10 9 13 13 H 1.09004 * 111.10340 * 281.43500 * 12 11 10 14 14 C 1.51972 * 115.01232 * 153.49654 * 12 11 10 15 15 C 1.53891 * 107.28850 * 184.54509 * 14 12 11 16 16 N 1.46597 * 110.70728 * 51.80647 * 15 14 12 17 17 C 1.34777 * 119.74912 * 132.28147 * 16 15 14 18 18 O 1.21646 * 119.99800 * 351.74576 * 17 16 15 19 19 C 1.47273 * 120.00333 * 171.74781 * 17 16 15 20 20 C 1.38434 * 120.03045 * 170.10173 * 19 17 16 21 21 C 1.40664 * 118.26689 * 179.80960 * 20 19 17 22 22 C 1.38261 * 133.39669 * 180.17173 * 21 20 19 23 23 C 1.39674 * 106.99123 * 180.27714 * 22 21 20 24 24 C 1.35646 * 108.08836 * 359.97438 * 23 22 21 25 25 N 1.35920 * 109.05519 * 0.02562 * 24 23 22 26 26 C 1.36901 * 132.42390 * 180.02562 * 25 24 23 27 27 N 1.29794 * 121.47989 * 179.97438 * 26 25 24 28 28 C 1.47890 * 119.98201 * 311.81168 * 16 15 14 29 29 C 1.45514 * 126.39669 * 180.02562 * 9 7 2 30 30 H 1.09000 * 109.56814 * 93.34768 * 29 9 7 31 31 H 0.96994 * 120.00612 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.92008 * 55.66590 * 10 9 7 33 33 H 1.08997 * 110.08544 * 294.46118 * 10 9 7 34 34 H 1.08999 * 110.95930 * 95.67843 * 11 10 9 35 35 H 1.08999 * 110.95461 * 219.38560 * 11 10 9 36 36 H 1.08998 * 109.89069 * 303.98934 * 14 12 11 37 37 H 1.08998 * 109.89329 * 65.09819 * 14 12 11 38 38 H 1.08996 * 109.23197 * 172.12976 * 15 14 12 39 39 H 1.09005 * 109.22412 * 291.49367 * 15 14 12 40 40 H 1.08000 * 120.86785 * 0.02854 * 20 19 17 41 41 H 1.07997 * 126.50510 * 0.24515 * 22 21 20 42 42 H 1.08008 * 125.95807 * 180.02562 * 23 22 21 43 43 H 1.07995 * 125.47260 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.25705 * 359.97438 * 26 25 24 45 45 H 1.09003 * 110.46337 * 292.89735 * 28 16 15 46 46 H 1.08995 * 109.63269 * 171.35865 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1466 -2.5532 -0.0007 11 6 -0.4340 -4.0739 -0.1295 12 6 0.8681 -4.5885 -0.7637 13 1 0.8913 -4.3830 -1.8339 14 6 1.1966 -6.0423 -0.4668 15 6 2.5761 -6.3345 -1.0830 16 7 3.5596 -5.3381 -0.6482 17 6 4.7629 -5.7404 -0.1933 18 8 4.9768 -6.9226 -0.0026 19 6 5.8187 -4.7487 0.0728 20 6 6.9769 -5.1290 0.7289 21 6 7.9627 -4.1527 0.9602 22 6 9.2054 -4.1823 1.5655 23 6 9.7227 -2.8865 1.4992 24 6 8.8129 -2.1016 0.8698 25 7 7.7331 -2.8556 0.5338 26 6 6.5599 -2.5557 -0.1047 27 7 5.6549 -3.4608 -0.3202 28 6 3.2333 -3.8975 -0.7195 29 6 1.9084 -3.7214 -0.0005 30 1 1.9996 -4.0799 1.0248 31 1 -0.4851 0.8399 0.0004 32 1 -0.5800 -2.0203 -0.8470 33 1 -0.5659 -2.1736 0.9311 34 1 -0.5954 -4.5246 0.8498 35 1 -1.2854 -4.2555 -0.7854 36 1 1.2304 -6.2022 0.6109 37 1 0.4449 -6.6916 -0.9156 38 1 2.9064 -7.3251 -0.7706 39 1 2.4963 -6.3096 -2.1698 40 1 7.1214 -6.1496 1.0515 41 1 9.6850 -5.0437 2.0063 42 1 10.6804 -2.5657 1.8817 43 1 8.9281 -1.0469 0.6681 44 1 6.3834 -1.5432 -0.4366 45 1 3.1403 -3.5787 -1.7577 46 1 4.0105 -3.3207 -0.2182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042110843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:42 Heat of formation + Delta-G solvation = 108.256133 kcal Electronic energy + Delta-G solvation = -30254.885658 eV Core-core repulsion = 26340.386314 eV Total energy + Delta-G solvation = -3914.499344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.53743 -40.20802 -38.39375 -37.44993 -35.20498 -33.31028 -32.98458 -31.50938 -30.94530 -29.39034 -28.64360 -28.18576 -25.12979 -24.39162 -24.04253 -22.95608 -21.93913 -21.27709 -20.17483 -19.87653 -19.31073 -18.45459 -17.19128 -16.76803 -16.14673 -15.93527 -15.80899 -15.26517 -14.98085 -14.74634 -14.51254 -14.32017 -14.06084 -13.76712 -13.48703 -13.16937 -12.84673 -12.72721 -12.61595 -12.45778 -12.35169 -11.97327 -11.84944 -11.52880 -11.27878 -10.90574 -10.79525 -10.75064 -10.70246 -10.51646 -10.20301 -10.06687 -9.84303 -9.75336 -9.60462 -9.20880 -8.79401 -8.63674 -8.37586 -7.65672 -6.85116 -5.72814 -3.05918 0.30462 1.02364 2.39030 2.65002 2.71400 3.11064 3.35409 3.38183 3.42931 3.62448 3.88031 4.35377 4.43969 4.49448 4.66323 4.97587 4.99862 5.07168 5.18071 5.23640 5.29508 5.40302 5.44999 5.52701 5.65528 5.72936 5.82197 5.85207 5.88005 5.99164 6.00055 6.11599 6.20565 6.23275 6.28694 6.37057 6.47617 6.52292 6.59950 6.67659 6.71522 6.86655 7.07028 7.11552 7.45994 7.53963 7.61489 7.66245 7.80244 8.22032 8.28009 9.17763 9.81342 10.50157 11.39812 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.004771 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.209585 B = 5866.814915 C = 8642.558303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.114 4.114 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.110 3.890 16 N -0.585 5.585 17 C 0.578 3.422 18 O -0.551 6.551 19 C 0.015 3.985 20 C -0.044 4.044 21 C 0.027 3.973 22 C -0.175 4.175 23 C -0.148 4.148 24 C -0.026 4.026 25 N -0.386 5.386 26 C 0.308 3.692 27 N -0.448 5.448 28 C 0.086 3.914 29 C 0.154 3.846 30 H 0.021 0.979 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.161 0.839 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.176 0.824 44 H 0.211 0.789 45 H 0.069 0.931 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.771 -7.795 -0.187 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.054 3.946 11 C -0.177 4.177 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.013 4.013 16 N -0.316 5.316 17 C 0.365 3.635 18 O -0.431 6.431 19 C -0.102 4.102 20 C -0.066 4.066 21 C -0.078 4.078 22 C -0.200 4.200 23 C -0.171 4.171 24 C -0.158 4.158 25 N -0.058 5.058 26 C 0.026 3.974 27 N -0.161 5.161 28 C -0.036 4.036 29 C 0.045 3.955 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.194 0.806 44 H 0.227 0.773 45 H 0.087 0.913 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.739 -8.032 -0.629 15.073 hybrid contribution 0.922 0.965 0.359 1.383 sum 13.662 -7.066 -0.270 15.384 Atomic orbital electron populations 1.69938 1.04867 1.24957 1.57103 1.24778 0.95649 0.97516 1.02488 0.86186 0.78569 0.83884 0.77491 1.21619 1.21766 1.20841 1.18990 0.90298 0.82233 1.43526 0.90361 1.44146 1.01621 0.99201 1.86650 1.21524 0.83718 0.88497 1.00885 1.22735 0.96110 0.99626 0.99239 1.22309 0.97363 0.93605 1.00135 0.90521 1.21773 0.95353 0.97226 1.01201 1.21628 0.88551 0.92560 0.98540 1.48134 1.13098 1.08833 1.61522 1.17442 0.81869 0.86762 0.77396 1.90768 1.81293 1.16850 1.54152 1.20844 0.95849 0.90678 1.02846 1.21601 0.90286 0.99945 0.94755 1.18892 0.98051 0.84346 1.06505 1.21119 0.93712 0.98768 1.06443 1.21035 1.00172 0.93050 1.02856 1.22033 0.87412 0.98326 1.07983 1.43246 1.14192 1.10081 1.38323 1.25240 0.79495 1.01058 0.91564 1.68580 1.24848 1.01359 1.21265 1.22922 1.00370 0.78035 1.02260 1.21047 0.91620 0.87402 0.95439 0.96213 0.93790 0.92698 0.94535 0.92657 0.92315 0.91538 0.90953 0.89455 0.91870 0.82114 0.83214 0.83148 0.80633 0.77317 0.91315 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.44 55.49 0.58 -25.85 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.22 -5.86 9.88 -15.06 -0.15 -6.01 16 8 H 0.08 1.96 7.43 -52.49 -0.39 1.57 16 9 N -0.59 -14.60 3.35 -162.86 -0.55 -15.14 16 10 C 0.18 4.26 5.45 -1.91 -0.01 4.25 16 11 C -0.14 -2.60 6.54 -25.15 -0.16 -2.76 16 12 C -0.11 -2.03 2.60 -89.47 -0.23 -2.26 16 13 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 14 C -0.12 -1.72 5.72 -26.79 -0.15 -1.88 16 15 C 0.11 1.64 6.35 -3.52 -0.02 1.62 16 16 N -0.59 -9.97 3.00 -173.99 -0.52 -10.49 16 17 C 0.58 10.02 7.60 -12.59 -0.10 9.93 16 18 O -0.55 -10.28 15.73 5.24 0.08 -10.20 16 19 C 0.01 0.23 6.58 -82.44 -0.54 -0.31 16 20 C -0.04 -0.60 9.72 -38.59 -0.38 -0.97 16 21 C 0.03 0.34 6.78 -83.95 -0.57 -0.23 16 22 C -0.17 -1.80 10.98 -39.04 -0.43 -2.23 16 23 C -0.15 -1.32 10.80 -39.97 -0.43 -1.75 16 24 C -0.03 -0.24 11.62 -16.67 -0.19 -0.44 16 25 N -0.39 -4.54 2.95 -62.17 -0.18 -4.72 16 26 C 0.31 3.80 12.16 -89.23 -1.09 2.71 16 27 N -0.45 -6.78 6.15 -10.43 -0.06 -6.85 16 28 C 0.09 1.60 5.05 -3.91 -0.02 1.58 16 29 C 0.15 3.18 2.79 -67.78 -0.19 2.99 16 30 H 0.02 0.46 7.93 -51.93 -0.41 0.04 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 33 H 0.04 0.96 7.77 -51.93 -0.40 0.56 16 34 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.03 7.98 -51.93 -0.41 0.61 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.30 6.92 -51.93 -0.36 0.94 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.16 2.00 7.69 -52.49 -0.40 1.60 16 41 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.21 1.91 8.06 -52.48 -0.42 1.48 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.14 2.61 3.86 -81.67 -0.32 2.29 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -32.32 364.74 -11.37 -43.69 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.43 Total: 4.01 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -4.76 Total: 3.92 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.74 Total: -63.05 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.32 -11.37 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042110843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.947 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds