Wall clock time and date at job start Tue Mar 31 2020 23:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99588 * 2 1 4 4 H 1.48497 * 109.47341 * 270.00453 * 3 2 1 5 5 H 1.48499 * 109.47079 * 30.00407 * 3 2 1 6 6 H 1.48505 * 109.47251 * 150.00268 * 3 2 1 7 7 C 1.38807 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00235 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.48154 * 126.39975 * 0.03195 * 9 7 2 11 11 C 1.55303 * 107.04402 * 175.01986 * 10 9 7 12 12 C 1.53698 * 101.84718 * 337.52984 * 11 10 9 13 13 H 1.09004 * 111.10340 * 281.43500 * 12 11 10 14 14 C 1.51972 * 115.01232 * 153.49654 * 12 11 10 15 15 C 1.53891 * 107.28850 * 184.54509 * 14 12 11 16 16 N 1.46597 * 110.70728 * 51.80647 * 15 14 12 17 17 C 1.34777 * 119.74912 * 132.28147 * 16 15 14 18 18 O 1.21646 * 119.99800 * 351.74576 * 17 16 15 19 19 C 1.47273 * 120.00333 * 171.74781 * 17 16 15 20 20 C 1.38434 * 120.03045 * 170.10173 * 19 17 16 21 21 C 1.40664 * 118.26689 * 179.80960 * 20 19 17 22 22 C 1.38261 * 133.39669 * 180.17173 * 21 20 19 23 23 C 1.39674 * 106.99123 * 180.27714 * 22 21 20 24 24 C 1.35646 * 108.08836 * 359.97438 * 23 22 21 25 25 N 1.35920 * 109.05519 * 0.02562 * 24 23 22 26 26 C 1.36901 * 132.42390 * 180.02562 * 25 24 23 27 27 N 1.29794 * 121.47989 * 179.97438 * 26 25 24 28 28 C 1.47890 * 119.98201 * 311.81168 * 16 15 14 29 29 C 1.45514 * 126.39669 * 180.02562 * 9 7 2 30 30 H 1.09000 * 109.56814 * 93.34768 * 29 9 7 31 31 H 0.96994 * 120.00612 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.92008 * 55.66590 * 10 9 7 33 33 H 1.08997 * 110.08544 * 294.46118 * 10 9 7 34 34 H 1.08999 * 110.95930 * 95.67843 * 11 10 9 35 35 H 1.08999 * 110.95461 * 219.38560 * 11 10 9 36 36 H 1.08998 * 109.89069 * 303.98934 * 14 12 11 37 37 H 1.08998 * 109.89329 * 65.09819 * 14 12 11 38 38 H 1.08996 * 109.23197 * 172.12976 * 15 14 12 39 39 H 1.09005 * 109.22412 * 291.49367 * 15 14 12 40 40 H 1.08000 * 120.86785 * 0.02854 * 20 19 17 41 41 H 1.07997 * 126.50510 * 0.24515 * 22 21 20 42 42 H 1.08008 * 125.95807 * 180.02562 * 23 22 21 43 43 H 1.07995 * 125.47260 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.25705 * 359.97438 * 26 25 24 45 45 H 1.09003 * 110.46337 * 292.89735 * 28 16 15 46 46 H 1.08995 * 109.63269 * 171.35865 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1466 -2.5532 -0.0007 11 6 -0.4340 -4.0739 -0.1295 12 6 0.8681 -4.5885 -0.7637 13 1 0.8913 -4.3830 -1.8339 14 6 1.1966 -6.0423 -0.4668 15 6 2.5761 -6.3345 -1.0830 16 7 3.5596 -5.3381 -0.6482 17 6 4.7629 -5.7404 -0.1933 18 8 4.9768 -6.9226 -0.0026 19 6 5.8187 -4.7487 0.0728 20 6 6.9769 -5.1290 0.7289 21 6 7.9627 -4.1527 0.9602 22 6 9.2054 -4.1823 1.5655 23 6 9.7227 -2.8865 1.4992 24 6 8.8129 -2.1016 0.8698 25 7 7.7331 -2.8556 0.5338 26 6 6.5599 -2.5557 -0.1047 27 7 5.6549 -3.4608 -0.3202 28 6 3.2333 -3.8975 -0.7195 29 6 1.9084 -3.7214 -0.0005 30 1 1.9996 -4.0799 1.0248 31 1 -0.4851 0.8399 0.0004 32 1 -0.5800 -2.0203 -0.8470 33 1 -0.5659 -2.1736 0.9311 34 1 -0.5954 -4.5246 0.8498 35 1 -1.2854 -4.2555 -0.7854 36 1 1.2304 -6.2022 0.6109 37 1 0.4449 -6.6916 -0.9156 38 1 2.9064 -7.3251 -0.7706 39 1 2.4963 -6.3096 -2.1698 40 1 7.1214 -6.1496 1.0515 41 1 9.6850 -5.0437 2.0063 42 1 10.6804 -2.5657 1.8817 43 1 8.9281 -1.0469 0.6681 44 1 6.3834 -1.5432 -0.4366 45 1 3.1403 -3.5787 -1.7577 46 1 4.0105 -3.3207 -0.2182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042110843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:41 Heat of formation + Delta-G solvation = 91.782197 kcal Electronic energy + Delta-G solvation = -30255.600021 eV Core-core repulsion = 26340.386314 eV Total energy + Delta-G solvation = -3915.213708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.39074 -41.52783 -39.84888 -38.47455 -36.74535 -34.71249 -34.19584 -33.05132 -31.95103 -30.92893 -30.16909 -29.34870 -26.64291 -25.71192 -25.33718 -24.20615 -23.15125 -22.15336 -21.74898 -21.40813 -20.59073 -19.49641 -18.57668 -18.25721 -17.38634 -16.98298 -16.92193 -16.65914 -16.34409 -16.16739 -15.79713 -15.65762 -15.29284 -15.18355 -14.92371 -14.68122 -13.98450 -13.78579 -13.70560 -13.62852 -13.44582 -13.31236 -13.20101 -13.07323 -13.01551 -12.69543 -12.46766 -12.10824 -12.01077 -11.84199 -11.70087 -11.59801 -11.51112 -11.33501 -11.29727 -10.67563 -10.21845 -9.86261 -9.72975 -8.86692 -8.55637 -7.78554 -5.14132 -0.67864 0.13662 1.48340 1.51615 1.53303 1.58019 1.59302 1.87661 1.95815 2.54318 2.56598 2.86336 3.31546 3.40946 3.55945 3.61355 3.81194 3.88192 3.93947 4.02046 4.04841 4.25939 4.31369 4.34922 4.41082 4.44545 4.52168 4.60902 4.62696 4.65246 4.78147 4.86334 4.94250 5.05000 5.11455 5.12644 5.15273 5.19372 5.30111 5.48147 5.52811 5.54642 5.63846 5.69702 5.77229 5.79662 6.16701 6.20750 6.26828 6.57309 7.00117 7.12503 7.82150 8.51248 9.33461 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.004771 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.209585 B = 5866.814915 C = 8642.558303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.260 1.260 7 C -0.227 4.227 8 H 0.090 0.910 9 N -0.609 5.609 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.105 4.105 15 C 0.106 3.894 16 N -0.589 5.589 17 C 0.574 3.426 18 O -0.573 6.573 19 C -0.026 4.026 20 C -0.030 4.030 21 C -0.017 4.017 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.010 4.010 25 N -0.397 5.397 26 C 0.311 3.689 27 N -0.479 5.479 28 C 0.101 3.899 29 C 0.148 3.852 30 H 0.001 0.999 31 H 0.244 0.756 32 H 0.023 0.977 33 H -0.001 1.001 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.184 0.816 43 H 0.211 0.789 44 H 0.238 0.762 45 H 0.059 0.941 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.591 -7.764 -0.159 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.185 1.185 7 C -0.355 4.355 8 H 0.107 0.893 9 N -0.334 5.334 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.121 4.121 13 H 0.093 0.907 14 C -0.143 4.143 15 C -0.016 4.016 16 N -0.319 5.319 17 C 0.364 3.636 18 O -0.455 6.455 19 C -0.141 4.141 20 C -0.053 4.053 21 C -0.120 4.120 22 C -0.185 4.185 23 C -0.174 4.174 24 C -0.142 4.142 25 N -0.070 5.070 26 C 0.030 3.970 27 N -0.193 5.193 28 C -0.022 4.022 29 C 0.040 3.960 30 H 0.018 0.982 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.017 0.983 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.181 0.819 41 H 0.187 0.813 42 H 0.201 0.799 43 H 0.228 0.772 44 H 0.254 0.746 45 H 0.077 0.923 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.582 -8.057 -0.603 17.552 hybrid contribution 0.285 0.999 0.451 1.133 sum 15.867 -7.057 -0.152 17.366 Atomic orbital electron populations 1.70178 1.06478 1.25018 1.58857 1.25639 0.96500 1.00975 1.03071 0.85139 0.77978 0.79163 0.77506 1.21143 1.23028 1.18480 1.19431 0.91059 0.83079 1.41958 0.89271 1.44422 1.02182 1.00409 1.86385 1.21309 0.83458 0.91821 0.97580 1.22616 0.97562 0.95499 1.00579 1.22231 0.95380 0.95087 0.99380 0.90686 1.21717 0.96128 0.95357 1.01126 1.21785 0.88143 0.92212 0.99468 1.48149 1.13667 1.08359 1.61746 1.17751 0.82202 0.86952 0.76722 1.90729 1.81755 1.17735 1.55275 1.20615 0.96405 0.91045 1.06056 1.21694 0.89930 1.00430 0.93206 1.19082 0.99047 0.84818 1.09068 1.21603 0.92550 1.00255 1.04136 1.21523 1.01349 0.92137 1.02426 1.22848 0.86017 0.99775 1.05522 1.43387 1.14652 1.10175 1.38803 1.25676 0.79304 1.01390 0.90678 1.68325 1.26593 1.01532 1.22801 1.22644 0.99119 0.79277 1.01146 1.21134 0.93877 0.85983 0.95046 0.98181 0.94715 0.95872 0.98272 0.91635 0.89878 0.92180 0.87485 0.89127 0.90379 0.81877 0.81327 0.79897 0.77192 0.74582 0.92285 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.11 10.44 21.65 0.23 -56.88 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 3 Si 0.97 43.86 29.55 68.60 2.03 45.89 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.23 -12.19 9.88 84.03 0.83 -11.36 16 8 H 0.09 4.47 7.43 -2.91 -0.02 4.45 16 9 N -0.61 -30.99 3.35 -669.18 -2.24 -33.23 16 10 C 0.18 9.13 5.45 86.85 0.47 9.61 16 11 C -0.12 -4.62 6.54 31.62 0.21 -4.41 16 12 C -0.10 -3.53 2.60 -10.05 -0.03 -3.55 16 13 H 0.07 2.67 8.12 -2.38 -0.02 2.65 16 14 C -0.10 -2.91 5.72 30.56 0.17 -2.74 16 15 C 0.11 3.05 6.35 86.66 0.55 3.60 16 16 N -0.59 -20.20 3.00 -822.61 -2.47 -22.67 16 17 C 0.57 20.34 7.60 86.62 0.66 21.00 16 18 O -0.57 -21.76 15.73 -4.18 -0.07 -21.82 16 19 C -0.03 -0.82 6.58 40.98 0.27 -0.55 16 20 C -0.03 -0.83 9.72 22.91 0.22 -0.61 16 21 C -0.02 -0.40 6.78 38.70 0.26 -0.14 16 22 C -0.16 -2.82 10.98 22.62 0.25 -2.57 16 23 C -0.15 -2.06 10.80 22.02 0.24 -1.83 16 24 C -0.01 -0.15 11.62 83.46 0.97 0.82 16 25 N -0.40 -8.46 2.95 -350.60 -1.04 -9.50 16 26 C 0.31 7.29 12.16 179.86 2.19 9.47 16 27 N -0.48 -14.57 6.15 -186.90 -1.15 -15.71 16 28 C 0.10 3.80 5.05 85.71 0.43 4.24 16 29 C 0.15 6.20 2.79 45.62 0.13 6.33 16 30 H 0.00 0.04 7.93 -2.39 -0.02 0.02 16 31 H 0.24 14.27 8.31 -92.71 -0.77 13.49 16 32 H 0.02 1.28 7.21 -2.39 -0.02 1.26 16 33 H 0.00 -0.05 7.77 -2.39 -0.02 -0.07 16 34 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.06 1.77 7.98 -2.39 -0.02 1.75 16 37 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 2.60 6.92 -2.39 -0.02 2.58 16 39 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.16 4.14 7.69 -2.91 -0.02 4.12 16 41 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.24 3.80 8.06 -2.91 -0.02 3.77 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.14 5.31 3.86 -61.11 -0.24 5.07 16 Total: -1.00 -74.07 364.74 4.35 -69.72 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.77 Total: 20.29 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 8.29 Total: 23.92 kcal Atomic # 7 Polarization: -131.33 SS G_CDS: -6.67 Total: -138.00 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -74.07 4.35 -69.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042110843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.501 kcal (2) G-P(sol) polarization free energy of solvation -74.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds