Wall clock time and date at job start Tue Mar 31 2020 23:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47119 * 300.00207 * 3 2 1 6 6 H 1.48505 * 109.47053 * 60.00168 * 3 2 1 7 7 C 1.38813 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99669 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.47438 * 126.06079 * 0.02562 * 9 7 2 11 11 C 1.54504 * 107.14956 * 178.35569 * 10 9 7 12 12 C 1.56028 * 102.61151 * 337.15443 * 11 10 9 13 13 H 1.09001 * 112.85358 * 157.06201 * 12 11 10 14 14 C 1.53084 * 106.39949 * 281.61771 * 12 11 10 15 15 C 1.52841 * 110.57306 * 164.58154 * 14 12 11 16 16 N 1.47145 * 107.97951 * 302.64778 * 15 14 12 17 17 C 1.34778 * 121.21567 * 237.30703 * 16 15 14 18 18 O 1.21642 * 119.99837 * 172.37754 * 17 16 15 19 19 C 1.47278 * 119.99968 * 352.38417 * 17 16 15 20 20 C 1.38437 * 120.03165 * 170.39154 * 19 17 16 21 21 C 1.40656 * 118.27196 * 179.97438 * 20 19 17 22 22 C 1.38253 * 133.40124 * 179.97438 * 21 20 19 23 23 C 1.39672 * 106.99747 * 180.02562 * 22 21 20 24 24 C 1.35646 * 108.08368 * 0.02562 * 23 22 21 25 25 N 1.35915 * 109.05717 * 359.97438 * 24 23 22 26 26 C 1.36904 * 132.42503 * 180.02562 * 25 24 23 27 27 N 1.29796 * 121.48197 * 179.76089 * 26 25 24 28 28 C 1.46765 * 117.57285 * 57.28164 * 16 15 14 29 29 C 1.46470 * 126.06155 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.42154 * 90.12926 * 29 9 7 31 31 H 0.96996 * 119.99427 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.89965 * 297.73509 * 10 9 7 33 33 H 1.09002 * 109.90053 * 58.79709 * 10 9 7 34 34 H 1.09001 * 110.78014 * 95.43791 * 11 10 9 35 35 H 1.08996 * 110.78167 * 218.68735 * 11 10 9 36 36 H 1.08999 * 109.25552 * 284.86678 * 14 12 11 37 37 H 1.09002 * 109.25639 * 44.29748 * 14 12 11 38 38 H 1.09005 * 109.75688 * 62.27080 * 15 14 12 39 39 H 1.09001 * 109.75813 * 183.02217 * 15 14 12 40 40 H 1.08004 * 120.86411 * 359.94835 * 20 19 17 41 41 H 1.08001 * 126.50106 * 359.97438 * 22 21 20 42 42 H 1.08003 * 125.95968 * 179.97438 * 23 22 21 43 43 H 1.08000 * 125.47338 * 180.02562 * 24 23 22 44 44 H 1.08009 * 119.26054 * 359.97438 * 26 25 24 45 45 H 1.08998 * 109.22812 * 187.16488 * 28 16 15 46 46 H 1.09000 * 109.22017 * 67.80428 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1405 -2.5437 -0.0005 11 6 -0.4377 -4.0593 -0.0429 12 6 0.8719 -4.6463 -0.6550 13 1 1.0214 -5.6970 -0.4066 14 6 0.7965 -4.3914 -2.1626 15 6 2.1698 -4.5750 -2.8078 16 7 3.1098 -3.6579 -2.1440 17 6 3.8020 -2.7388 -2.8458 18 8 4.4660 -1.9024 -2.2633 19 6 3.7544 -2.7470 -4.3177 20 6 4.2968 -1.6940 -5.0344 21 6 4.2315 -1.7402 -6.4387 22 6 4.6589 -0.8860 -7.4381 23 6 4.3087 -1.4742 -8.6555 24 6 3.6869 -2.6505 -8.3913 25 7 3.6306 -2.8301 -7.0453 26 6 3.1170 -3.8334 -6.2681 27 7 3.1841 -3.7892 -4.9726 28 6 3.2656 -3.7802 -0.6898 29 6 1.9199 -3.7267 -0.0016 30 1 2.0584 -4.0430 1.0323 31 1 -0.4849 0.8401 0.0004 32 1 -0.5598 -2.1086 0.9066 33 1 -0.5655 -2.0549 -0.8772 34 1 -0.6038 -4.4490 0.9614 35 1 -1.2946 -4.2676 -0.6835 36 1 0.0921 -5.0920 -2.6109 37 1 0.4502 -3.3728 -2.3381 38 1 2.5040 -5.6042 -2.6762 39 1 2.1124 -4.3386 -3.8703 40 1 4.7577 -0.8586 -4.5283 41 1 5.1665 0.0577 -7.3031 42 1 4.4990 -1.0638 -9.6362 43 1 3.2996 -3.3348 -9.1317 44 1 2.6485 -4.6825 -6.7437 45 1 3.8881 -2.9630 -0.3255 46 1 3.7494 -4.7294 -0.4593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042110844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:45 Heat of formation + Delta-G solvation = 110.771284 kcal Electronic energy + Delta-G solvation = -30738.625908 eV Core-core repulsion = 26824.235629 eV Total energy + Delta-G solvation = -3914.390279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.53967 -39.96872 -38.31629 -37.26034 -34.89771 -33.24194 -32.74727 -31.33867 -30.91771 -29.42891 -28.28925 -28.17784 -24.91367 -24.54414 -24.03223 -22.71906 -22.34775 -21.37352 -20.06820 -19.88712 -18.78591 -18.12601 -17.13440 -16.47367 -16.19003 -15.95093 -15.76506 -15.18209 -14.75063 -14.61802 -14.46035 -14.12148 -13.90624 -13.68011 -13.23063 -13.03161 -12.76538 -12.64075 -12.56948 -12.47435 -12.28615 -11.89168 -11.52400 -11.31780 -11.25321 -10.78988 -10.75884 -10.68961 -10.66185 -10.17261 -9.96158 -9.79092 -9.76002 -9.57954 -9.41919 -9.20728 -8.88729 -8.46220 -8.03550 -7.62008 -6.68820 -5.56923 -2.88228 0.37448 0.99900 2.35752 2.66186 2.89330 3.36956 3.51046 3.57370 3.64294 3.76661 3.91731 4.38294 4.50898 4.62365 4.65174 4.99193 5.09515 5.22773 5.24192 5.40361 5.42909 5.48106 5.59386 5.64649 5.72255 5.84859 5.88254 5.93876 5.96964 6.06126 6.10457 6.22387 6.33513 6.37165 6.38355 6.48202 6.51600 6.56936 6.62115 6.70621 6.82434 6.95185 7.07172 7.22980 7.45307 7.69327 7.72180 7.97866 8.00014 8.37722 8.66589 9.37122 9.97870 10.62344 11.55730 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004421 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.020391 B = 6331.980672 C = 7712.321266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.208 4.208 8 H 0.084 0.916 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.144 4.144 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.122 4.122 15 C 0.078 3.922 16 N -0.573 5.573 17 C 0.579 3.421 18 O -0.528 6.528 19 C 0.023 3.977 20 C -0.042 4.042 21 C 0.033 3.967 22 C -0.175 4.175 23 C -0.146 4.146 24 C -0.034 4.034 25 N -0.387 5.387 26 C 0.296 3.704 27 N -0.453 5.453 28 C 0.111 3.889 29 C 0.155 3.845 30 H 0.025 0.975 31 H 0.247 0.753 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.138 0.862 40 H 0.164 0.836 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.175 0.825 44 H 0.207 0.793 45 H 0.094 0.906 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 -11.848 -16.597 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.336 4.336 8 H 0.102 0.898 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.160 4.160 15 C -0.045 4.045 16 N -0.304 5.304 17 C 0.365 3.635 18 O -0.404 6.404 19 C -0.094 4.094 20 C -0.064 4.064 21 C -0.072 4.072 22 C -0.201 4.201 23 C -0.169 4.169 24 C -0.165 4.165 25 N -0.059 5.059 26 C 0.015 3.985 27 N -0.166 5.166 28 C -0.012 4.012 29 C 0.046 3.954 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.181 0.819 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.192 0.808 44 H 0.223 0.777 45 H 0.113 0.887 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.847 -11.942 -15.467 20.133 hybrid contribution 0.402 1.463 -0.425 1.576 sum 5.248 -10.479 -15.892 19.746 Atomic orbital electron populations 1.69978 1.04797 1.24484 1.58391 1.24696 0.95561 0.97414 1.02881 0.86122 0.79375 0.84162 0.76873 1.20133 1.22125 1.22094 1.19138 0.90715 0.81983 1.41764 0.89847 1.44313 1.01410 0.99301 1.86341 1.21205 0.84365 0.88286 1.00726 1.23163 0.96203 0.99743 0.99137 1.22374 0.96915 0.97581 0.95271 0.90788 1.21840 0.96453 1.02763 0.94922 1.22809 0.88141 0.92269 1.01261 1.47550 1.41103 1.34038 1.07678 1.17218 0.80586 0.81202 0.84460 1.90826 1.43487 1.36423 1.69691 1.21017 1.01413 0.92102 0.94856 1.21693 0.95757 0.98974 0.90020 1.18915 1.04787 0.90870 0.92649 1.21160 1.07417 1.00963 0.90539 1.21032 1.02067 0.95093 0.98712 1.21938 1.10545 1.02023 0.81972 1.43141 1.38718 1.16294 1.07773 1.25032 0.95226 0.91260 0.86956 1.68249 1.17226 1.25365 1.05744 1.21470 0.99170 1.01345 0.79226 1.20676 0.91125 0.87890 0.95689 0.95747 0.94223 0.94196 0.93799 0.92869 0.92414 0.92392 0.90633 0.92674 0.84543 0.81852 0.83130 0.83181 0.80779 0.77694 0.88744 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 10.38 55.49 0.58 -27.72 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.90 23.95 29.55 -169.99 -5.02 18.93 16 4 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.86 7.11 56.52 0.40 -7.45 16 6 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 7 C -0.21 -5.98 9.70 -15.06 -0.15 -6.12 16 8 H 0.08 2.46 6.51 -52.48 -0.34 2.12 16 9 N -0.59 -15.08 3.20 -164.44 -0.53 -15.61 16 10 C 0.18 4.41 4.61 -2.74 -0.01 4.40 16 11 C -0.14 -2.72 6.32 -24.32 -0.15 -2.87 16 12 C -0.10 -1.77 3.68 -88.45 -0.33 -2.10 16 13 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.12 -2.04 5.04 -26.77 -0.14 -2.17 16 15 C 0.08 1.22 5.99 -3.77 -0.02 1.19 16 16 N -0.57 -10.87 2.97 -175.43 -0.52 -11.39 16 17 C 0.58 11.75 7.64 -12.59 -0.10 11.65 16 18 O -0.53 -12.45 15.85 5.24 0.08 -12.37 16 19 C 0.02 0.39 6.61 -82.43 -0.55 -0.16 16 20 C -0.04 -0.66 9.72 -38.60 -0.38 -1.03 16 21 C 0.03 0.43 6.78 -83.95 -0.57 -0.14 16 22 C -0.18 -1.94 10.98 -39.04 -0.43 -2.37 16 23 C -0.15 -1.29 10.80 -39.97 -0.43 -1.72 16 24 C -0.03 -0.28 11.61 -16.67 -0.19 -0.48 16 25 N -0.39 -4.19 2.95 -62.17 -0.18 -4.37 16 26 C 0.30 2.96 12.16 -89.23 -1.09 1.87 16 27 N -0.45 -6.09 6.20 -10.42 -0.06 -6.15 16 28 C 0.11 2.18 5.69 -4.79 -0.03 2.15 16 29 C 0.15 3.22 2.96 -68.33 -0.20 3.01 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 33 H 0.04 1.21 7.04 -51.93 -0.37 0.85 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.58 6.86 -51.93 -0.36 1.23 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.14 2.03 3.89 -86.35 -0.34 1.69 16 40 H 0.16 2.56 7.69 -52.48 -0.40 2.16 16 41 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.21 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.09 2.13 5.53 -51.93 -0.29 1.84 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -35.72 360.67 -11.33 -47.05 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.26 Total: 1.47 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -4.84 Total: 4.72 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.72 Total: -65.24 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.02 Total: 18.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.72 -11.33 -47.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042110844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.824 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds