Wall clock time and date at job start Tue Mar 31 2020 23:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47119 * 300.00207 * 3 2 1 6 6 H 1.48505 * 109.47053 * 60.00168 * 3 2 1 7 7 C 1.38813 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99669 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.47438 * 126.06079 * 0.02562 * 9 7 2 11 11 C 1.54504 * 107.14956 * 178.35569 * 10 9 7 12 12 C 1.56028 * 102.61151 * 337.15443 * 11 10 9 13 13 H 1.09001 * 112.85358 * 157.06201 * 12 11 10 14 14 C 1.53084 * 106.39949 * 281.61771 * 12 11 10 15 15 C 1.52841 * 110.57306 * 164.58154 * 14 12 11 16 16 N 1.47145 * 107.97951 * 302.64778 * 15 14 12 17 17 C 1.34778 * 121.21567 * 237.30703 * 16 15 14 18 18 O 1.21642 * 119.99837 * 172.37754 * 17 16 15 19 19 C 1.47278 * 119.99968 * 352.38417 * 17 16 15 20 20 C 1.38437 * 120.03165 * 170.39154 * 19 17 16 21 21 C 1.40656 * 118.27196 * 179.97438 * 20 19 17 22 22 C 1.38253 * 133.40124 * 179.97438 * 21 20 19 23 23 C 1.39672 * 106.99747 * 180.02562 * 22 21 20 24 24 C 1.35646 * 108.08368 * 0.02562 * 23 22 21 25 25 N 1.35915 * 109.05717 * 359.97438 * 24 23 22 26 26 C 1.36904 * 132.42503 * 180.02562 * 25 24 23 27 27 N 1.29796 * 121.48197 * 179.76089 * 26 25 24 28 28 C 1.46765 * 117.57285 * 57.28164 * 16 15 14 29 29 C 1.46470 * 126.06155 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.42154 * 90.12926 * 29 9 7 31 31 H 0.96996 * 119.99427 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.89965 * 297.73509 * 10 9 7 33 33 H 1.09002 * 109.90053 * 58.79709 * 10 9 7 34 34 H 1.09001 * 110.78014 * 95.43791 * 11 10 9 35 35 H 1.08996 * 110.78167 * 218.68735 * 11 10 9 36 36 H 1.08999 * 109.25552 * 284.86678 * 14 12 11 37 37 H 1.09002 * 109.25639 * 44.29748 * 14 12 11 38 38 H 1.09005 * 109.75688 * 62.27080 * 15 14 12 39 39 H 1.09001 * 109.75813 * 183.02217 * 15 14 12 40 40 H 1.08004 * 120.86411 * 359.94835 * 20 19 17 41 41 H 1.08001 * 126.50106 * 359.97438 * 22 21 20 42 42 H 1.08003 * 125.95968 * 179.97438 * 23 22 21 43 43 H 1.08000 * 125.47338 * 180.02562 * 24 23 22 44 44 H 1.08009 * 119.26054 * 359.97438 * 26 25 24 45 45 H 1.08998 * 109.22812 * 187.16488 * 28 16 15 46 46 H 1.09000 * 109.22017 * 67.80428 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1405 -2.5437 -0.0005 11 6 -0.4377 -4.0593 -0.0429 12 6 0.8719 -4.6463 -0.6550 13 1 1.0214 -5.6970 -0.4066 14 6 0.7965 -4.3914 -2.1626 15 6 2.1698 -4.5750 -2.8078 16 7 3.1098 -3.6579 -2.1440 17 6 3.8020 -2.7388 -2.8458 18 8 4.4660 -1.9024 -2.2633 19 6 3.7544 -2.7470 -4.3177 20 6 4.2968 -1.6940 -5.0344 21 6 4.2315 -1.7402 -6.4387 22 6 4.6589 -0.8860 -7.4381 23 6 4.3087 -1.4742 -8.6555 24 6 3.6869 -2.6505 -8.3913 25 7 3.6306 -2.8301 -7.0453 26 6 3.1170 -3.8334 -6.2681 27 7 3.1841 -3.7892 -4.9726 28 6 3.2656 -3.7802 -0.6898 29 6 1.9199 -3.7267 -0.0016 30 1 2.0584 -4.0430 1.0323 31 1 -0.4849 0.8401 0.0004 32 1 -0.5598 -2.1086 0.9066 33 1 -0.5655 -2.0549 -0.8772 34 1 -0.6038 -4.4490 0.9614 35 1 -1.2946 -4.2676 -0.6835 36 1 0.0921 -5.0920 -2.6109 37 1 0.4502 -3.3728 -2.3381 38 1 2.5040 -5.6042 -2.6762 39 1 2.1124 -4.3386 -3.8703 40 1 4.7577 -0.8586 -4.5283 41 1 5.1665 0.0577 -7.3031 42 1 4.4990 -1.0638 -9.6362 43 1 3.2996 -3.3348 -9.1317 44 1 2.6485 -4.6825 -6.7437 45 1 3.8881 -2.9630 -0.3255 46 1 3.7494 -4.7294 -0.4593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042110844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:44 Heat of formation + Delta-G solvation = 89.264051 kcal Electronic energy + Delta-G solvation = -30739.558531 eV Core-core repulsion = 26824.235629 eV Total energy + Delta-G solvation = -3915.322903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.37102 -41.41626 -39.78512 -38.37572 -36.52999 -34.67790 -34.18881 -32.85428 -32.05414 -30.95460 -30.04459 -29.28416 -26.51760 -26.11702 -25.18127 -23.94448 -23.74587 -22.19983 -21.75922 -21.29900 -20.05544 -19.39286 -18.45791 -18.24044 -17.35414 -16.96685 -16.88708 -16.86591 -16.25200 -15.99150 -15.90287 -15.61344 -15.35426 -15.12223 -14.70104 -14.43097 -14.18841 -13.76089 -13.63858 -13.61814 -13.42802 -13.31794 -13.18114 -13.00971 -12.92028 -12.68640 -12.56347 -12.33062 -12.06213 -11.71493 -11.68343 -11.61112 -11.37266 -11.28260 -11.17598 -10.69959 -10.22862 -9.85524 -9.50512 -8.82243 -8.54043 -7.85814 -5.15428 -0.64449 0.15674 1.31587 1.33213 1.46185 1.60674 1.67459 1.96443 2.05050 2.45693 2.63865 2.91107 3.32626 3.44482 3.57162 3.60088 3.89578 3.90149 4.00034 4.03750 4.14274 4.28251 4.35892 4.44804 4.48102 4.54502 4.60807 4.64491 4.68110 4.71249 4.75387 4.90564 5.02024 5.13270 5.14885 5.15923 5.18292 5.29754 5.34923 5.50404 5.52848 5.65642 5.71358 5.72735 5.79486 5.84761 6.21820 6.24930 6.46140 6.64471 7.13746 7.20705 7.81641 8.44635 9.25336 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004421 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.020391 B = 6331.980672 C = 7712.321266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.954 3.046 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.199 4.199 8 H 0.067 0.933 9 N -0.606 5.606 10 C 0.187 3.813 11 C -0.129 4.129 12 C -0.085 4.085 13 H 0.123 0.877 14 C -0.116 4.116 15 C 0.076 3.924 16 N -0.576 5.576 17 C 0.564 3.436 18 O -0.585 6.585 19 C -0.005 4.005 20 C -0.054 4.054 21 C -0.013 4.013 22 C -0.172 4.172 23 C -0.156 4.156 24 C 0.002 3.998 25 N -0.397 5.397 26 C 0.321 3.679 27 N -0.473 5.473 28 C 0.113 3.887 29 C 0.142 3.858 30 H 0.028 0.972 31 H 0.242 0.758 32 H -0.001 1.001 33 H 0.004 0.996 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.023 0.977 38 H 0.089 0.911 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.154 0.846 42 H 0.183 0.817 43 H 0.227 0.773 44 H 0.267 0.733 45 H 0.051 0.949 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -15.860 -20.486 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.212 1.212 7 C -0.329 4.329 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.062 3.938 11 C -0.167 4.167 12 C -0.104 4.104 13 H 0.141 0.859 14 C -0.154 4.154 15 C -0.045 4.045 16 N -0.306 5.306 17 C 0.353 3.647 18 O -0.467 6.467 19 C -0.120 4.120 20 C -0.077 4.077 21 C -0.117 4.117 22 C -0.199 4.199 23 C -0.178 4.178 24 C -0.128 4.128 25 N -0.070 5.070 26 C 0.040 3.960 27 N -0.187 5.187 28 C -0.011 4.011 29 C 0.035 3.965 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.017 0.983 33 H 0.022 0.978 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.042 0.958 38 H 0.107 0.893 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.200 0.800 43 H 0.243 0.757 44 H 0.282 0.718 45 H 0.070 0.930 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.238 -16.007 -19.340 25.461 hybrid contribution 0.668 2.702 0.532 2.834 sum 4.906 -13.305 -18.809 23.556 Atomic orbital electron populations 1.70163 1.05582 1.24356 1.60156 1.25313 0.96377 0.99952 1.04244 0.85328 0.78001 0.81391 0.76807 1.20637 1.22401 1.21202 1.19172 0.90235 0.83731 1.39713 0.91484 1.44509 1.02225 1.00419 1.85928 1.20962 0.83550 0.92446 0.96853 1.23029 0.97991 0.94716 1.00973 1.22443 0.93770 0.98965 0.95239 0.85902 1.21804 0.98009 1.00756 0.94849 1.23117 0.86561 0.93049 1.01772 1.47755 1.41308 1.34187 1.07305 1.17912 0.79929 0.80535 0.86369 1.90766 1.45947 1.38639 1.71309 1.20460 1.04394 0.94185 0.92953 1.21574 0.96025 0.98291 0.91801 1.18846 1.07821 0.93247 0.91740 1.21570 1.06005 1.00819 0.91477 1.21516 1.01934 0.95359 0.99006 1.22907 1.06851 1.01764 0.81326 1.43377 1.39082 1.15875 1.08714 1.26149 0.92329 0.91555 0.85972 1.68007 1.18808 1.24310 1.07583 1.21366 0.97997 1.01592 0.80118 1.21006 0.92768 0.86219 0.96497 0.95426 0.94904 0.98284 0.97803 0.91220 0.90048 0.88218 0.95821 0.89269 0.83340 0.84403 0.82789 0.80015 0.75677 0.71794 0.93001 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.61 10.38 21.65 0.22 -61.38 16 2 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 3 Si 0.95 52.42 29.55 68.60 2.03 54.44 16 4 H -0.28 -15.47 7.11 99.48 0.71 -14.76 16 5 H -0.30 -16.25 7.11 99.48 0.71 -15.55 16 6 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 7 C -0.20 -12.20 9.70 84.03 0.81 -11.39 16 8 H 0.07 4.29 6.51 -2.91 -0.02 4.27 16 9 N -0.61 -32.53 3.20 -674.18 -2.16 -34.69 16 10 C 0.19 9.61 4.61 86.71 0.40 10.01 16 11 C -0.13 -4.64 6.32 32.16 0.20 -4.44 16 12 C -0.08 -2.71 3.68 -9.39 -0.03 -2.74 16 13 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 14 C -0.12 -3.60 5.04 30.57 0.15 -3.44 16 15 C 0.08 2.20 5.99 86.20 0.52 2.71 16 16 N -0.58 -22.22 2.97 -827.16 -2.46 -24.67 16 17 C 0.56 24.50 7.64 86.62 0.66 25.16 16 18 O -0.59 -30.56 15.85 -4.16 -0.07 -30.63 16 19 C 0.00 -0.16 6.61 40.98 0.27 0.11 16 20 C -0.05 -1.82 9.72 22.91 0.22 -1.60 16 21 C -0.01 -0.34 6.78 38.69 0.26 -0.08 16 22 C -0.17 -3.61 10.98 22.62 0.25 -3.37 16 23 C -0.16 -2.10 10.80 22.02 0.24 -1.87 16 24 C 0.00 0.02 11.61 83.46 0.97 0.99 16 25 N -0.40 -7.25 2.95 -350.61 -1.04 -8.28 16 26 C 0.32 5.15 12.16 179.86 2.19 7.33 16 27 N -0.47 -11.98 6.20 -186.88 -1.16 -13.13 16 28 C 0.11 4.51 5.69 85.75 0.49 5.00 16 29 C 0.14 5.90 2.96 44.75 0.13 6.03 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.00 -0.06 7.57 -2.39 -0.02 -0.08 16 33 H 0.00 0.22 7.04 -2.39 -0.02 0.20 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 2.57 7.98 -2.39 -0.02 2.55 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.02 0.98 6.86 -2.39 -0.02 0.96 16 38 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.15 4.07 3.89 -70.34 -0.27 3.79 16 40 H 0.14 5.06 7.69 -2.91 -0.02 5.03 16 41 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.23 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.27 0.73 8.06 -2.91 -0.02 0.70 16 45 H 0.05 2.51 5.53 -2.39 -0.01 2.50 16 46 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -90.52 360.67 4.32 -86.19 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.74 Total: 7.47 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 8.20 Total: 24.69 kcal Atomic # 7 Polarization: -135.58 SS G_CDS: -6.58 Total: -142.16 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.07 Total: -30.63 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 2.03 Total: 54.44 kcal Total: -90.52 4.32 -86.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042110844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.456 kcal (2) G-P(sol) polarization free energy of solvation -90.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds