Wall clock time and date at job start Tue Mar 31 2020 23:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99909 * 2 1 4 4 H 1.48504 * 109.47024 * 274.98548 * 3 2 1 5 5 H 1.48497 * 109.47091 * 34.98766 * 3 2 1 6 6 H 1.48499 * 109.47100 * 154.98906 * 3 2 1 7 7 C 1.38807 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00231 * 173.25648 * 7 2 1 9 9 N 1.36937 * 119.99779 * 353.25256 * 7 2 1 10 10 C 1.47437 * 126.06137 * 5.76088 * 9 7 2 11 11 C 1.54502 * 107.14879 * 178.39769 * 10 9 7 12 12 C 1.56025 * 102.61156 * 337.15698 * 11 10 9 13 13 H 1.09006 * 112.85864 * 157.06703 * 12 11 10 14 14 C 1.53096 * 106.39864 * 281.61779 * 12 11 10 15 15 C 1.52338 * 110.64430 * 164.45458 * 14 12 11 16 16 N 1.47151 * 108.24516 * 302.87538 * 15 14 12 17 17 C 1.34779 * 121.21070 * 237.25173 * 16 15 14 18 18 O 1.21650 * 119.99763 * 180.21983 * 17 16 15 19 19 C 1.47166 * 120.00260 * 0.21701 * 17 16 15 20 20 C 1.38583 * 120.72449 * 326.97045 * 19 17 16 21 21 C 1.38931 * 121.35907 * 179.74066 * 20 19 17 22 22 C 1.35825 * 122.59730 * 0.57397 * 21 20 19 23 23 C 1.40844 * 120.55830 * 359.69879 * 22 21 20 24 24 C 1.38417 * 134.90069 * 180.02562 * 23 22 21 25 25 N 1.33890 * 107.85011 * 179.97438 * 24 23 22 26 26 H 0.96998 * 125.02551 * 180.02562 * 25 24 23 27 27 N 1.39983 * 109.95637 * 0.02562 * 25 24 23 28 28 C 1.31476 * 109.01641 * 359.97438 * 27 25 24 29 29 C 1.46757 * 117.57228 * 56.97882 * 16 15 14 30 30 C 1.46472 * 126.06094 * 185.78974 * 9 7 2 31 31 H 1.09003 * 108.42031 * 90.74095 * 30 9 7 32 32 H 0.97005 * 119.99976 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.90560 * 297.77994 * 10 9 7 34 34 H 1.09000 * 109.90109 * 59.01714 * 10 9 7 35 35 H 1.08997 * 110.78468 * 95.44040 * 11 10 9 36 36 H 1.08998 * 110.78062 * 218.88208 * 11 10 9 37 37 H 1.09003 * 109.25734 * 284.86656 * 14 12 11 38 38 H 1.08998 * 109.25421 * 44.34017 * 14 12 11 39 39 H 1.09006 * 109.65266 * 183.15760 * 15 14 12 40 40 H 1.09004 * 109.60648 * 62.56580 * 15 14 12 41 41 H 1.07991 * 119.32231 * 359.97438 * 20 19 17 42 42 H 1.07998 * 118.70212 * 180.29123 * 21 20 19 43 43 H 1.07997 * 119.72358 * 179.71710 * 22 21 20 44 44 H 1.08002 * 126.07971 * 359.97438 * 24 23 22 45 45 H 1.09006 * 109.22110 * 68.08122 * 29 16 15 46 46 H 1.09001 * 109.22741 * 187.48296 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0847 -1.2053 -0.1104 9 7 1.3327 -2.3839 0.1383 10 6 -0.1323 -2.5450 0.1774 11 6 -0.4211 -4.0574 0.3050 12 6 0.8830 -4.7020 -0.2591 13 1 1.0424 -5.7188 0.1000 14 6 0.7842 -4.6134 -1.7843 15 6 2.1445 -4.8563 -2.4257 16 7 3.0931 -3.8724 -1.8805 17 6 3.7701 -3.0327 -2.6887 18 8 4.5521 -2.2305 -2.2145 19 6 3.5633 -3.0863 -4.1447 20 6 3.2820 -4.2874 -4.7762 21 6 3.0792 -4.3523 -6.1491 22 6 3.1537 -3.2595 -6.9523 23 6 3.4395 -1.9910 -6.4109 24 6 3.5823 -0.7163 -6.9310 25 7 3.8582 0.1125 -5.9163 26 1 4.0059 1.0673 -6.0017 27 7 3.9018 -0.6026 -4.7137 28 6 3.6563 -1.8705 -4.9600 29 6 3.2707 -3.8346 -0.4242 30 6 1.9349 -3.7121 0.2748 31 1 2.0790 -3.9176 1.3356 32 1 -0.4850 0.8401 0.0004 33 1 -0.5411 -2.0153 1.0378 34 1 -0.5727 -2.1595 -0.7422 35 1 -0.5703 -4.3361 1.3481 36 1 -1.2839 -4.3387 -0.2988 37 1 0.0775 -5.3619 -2.1429 38 1 0.4300 -3.6214 -2.0645 39 1 2.0674 -4.7343 -3.5062 40 1 2.4845 -5.8651 -2.1914 41 1 3.2155 -5.1909 -4.1885 42 1 2.8579 -5.3102 -6.5960 43 1 2.9922 -3.3639 -8.0150 44 1 3.4881 -0.4393 -7.9706 45 1 3.7634 -4.7510 -0.0989 46 1 3.8929 -2.9794 -0.1604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042177902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:24 Heat of formation + Delta-G solvation = 123.252562 kcal Electronic energy + Delta-G solvation = -31089.677867 eV Core-core repulsion = 27175.828817 eV Total energy + Delta-G solvation = -3913.849050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.20355 -39.89847 -37.99672 -36.75085 -34.87813 -32.71602 -32.11948 -31.28268 -30.63554 -29.34026 -28.45539 -28.21035 -25.15523 -24.31669 -23.69812 -22.60337 -21.64570 -21.50688 -19.89063 -19.32606 -18.29014 -18.03142 -17.35463 -16.44239 -16.17334 -15.61097 -15.14724 -14.91500 -14.72373 -14.46140 -14.20653 -13.98138 -13.83548 -13.56825 -13.26214 -12.84446 -12.78020 -12.42454 -12.04296 -11.93454 -11.84596 -11.70096 -11.38670 -11.25840 -10.95135 -10.81358 -10.67061 -10.55393 -10.37258 -10.17915 -10.00880 -9.76364 -9.68595 -9.54960 -9.38980 -9.12854 -8.70705 -8.39819 -8.00173 -7.55637 -6.64690 -5.54429 -2.84409 0.42844 1.80628 2.36651 2.70587 3.29046 3.51844 3.55607 3.60412 3.66458 4.06479 4.26491 4.50133 4.69231 4.88011 4.92090 5.16849 5.19673 5.23814 5.32406 5.36700 5.43148 5.55044 5.60696 5.63380 5.81413 5.81574 5.89363 5.94793 6.07775 6.14901 6.23610 6.29274 6.36550 6.37761 6.40416 6.49536 6.53750 6.59929 6.71728 6.79850 6.86208 7.05324 7.07271 7.22461 7.69432 7.70298 7.76231 8.02581 8.04440 8.41289 8.84899 9.40703 10.01870 10.65982 11.58600 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.005640 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.886681 B = 4962.963279 C = 6706.469919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.208 4.208 8 H 0.083 0.917 9 N -0.587 5.587 10 C 0.178 3.822 11 C -0.144 4.144 12 C -0.102 4.102 13 H 0.075 0.925 14 C -0.123 4.123 15 C 0.080 3.920 16 N -0.588 5.588 17 C 0.565 3.435 18 O -0.521 6.521 19 C -0.093 4.093 20 C -0.062 4.062 21 C -0.167 4.167 22 C -0.022 4.022 23 C -0.218 4.218 24 C 0.082 3.918 25 N -0.429 5.429 26 H 0.444 0.556 27 N -0.261 5.261 28 C 0.135 3.865 29 C 0.115 3.885 30 C 0.154 3.846 31 H 0.026 0.974 32 H 0.247 0.753 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.148 0.852 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.188 0.812 45 H 0.055 0.945 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -11.562 -15.518 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.220 1.220 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.337 4.337 8 H 0.101 0.899 9 N -0.312 5.312 10 C 0.053 3.947 11 C -0.182 4.182 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.161 4.161 15 C -0.042 4.042 16 N -0.321 5.321 17 C 0.354 3.646 18 O -0.397 6.397 19 C -0.099 4.099 20 C -0.084 4.084 21 C -0.186 4.186 22 C -0.043 4.043 23 C -0.228 4.228 24 C -0.075 4.075 25 N -0.128 5.128 26 H 0.288 0.712 27 N -0.087 5.087 28 C -0.023 4.023 29 C -0.009 4.009 30 C 0.045 3.955 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.165 0.835 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.205 0.795 45 H 0.073 0.927 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.081 -9.952 -14.284 17.881 hybrid contribution 0.024 0.982 -0.745 1.233 sum 4.105 -8.969 -15.029 17.977 Atomic orbital electron populations 1.69982 1.04792 1.24522 1.58201 1.24682 0.95519 0.97393 1.02728 0.86166 0.78861 0.84047 0.77313 1.21962 1.22125 1.20595 1.19085 0.91325 0.82088 1.41173 0.89933 1.44297 1.01313 1.00210 1.85422 1.21221 0.84524 0.88330 1.00577 1.23161 0.96169 0.99574 0.99294 1.22396 0.97165 0.97618 0.95030 0.90661 1.21741 0.95878 1.03108 0.95344 1.22409 0.89964 0.91532 1.00345 1.47646 1.41839 1.35734 1.06896 1.17748 0.81148 0.80321 0.85424 1.90806 1.36435 1.36315 1.76143 1.19920 1.06957 0.90451 0.92569 1.21578 0.94920 0.96888 0.95060 1.20303 1.06352 0.98751 0.93218 1.20202 0.94968 0.89963 0.99147 1.19568 1.15774 0.94245 0.93208 1.22702 0.99908 0.90065 0.94810 1.46584 1.49861 1.11305 1.05098 0.71187 1.77957 1.26247 1.04474 0.99986 1.21501 0.97476 0.91305 0.92060 1.21392 0.98915 1.01880 0.78676 1.20695 0.91170 0.87587 0.96011 0.95646 0.94261 0.93928 0.94162 0.92791 0.92380 0.92074 0.90219 0.87925 0.91657 0.83491 0.85629 0.85874 0.79513 0.92678 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 10.43 55.49 0.58 -28.10 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 3 Si 0.90 24.77 29.56 -169.99 -5.02 19.74 16 4 H -0.29 -8.14 7.11 56.52 0.40 -7.74 16 5 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.28 -7.63 7.11 56.52 0.40 -7.23 16 7 C -0.21 -6.15 9.71 -15.06 -0.15 -6.30 16 8 H 0.08 2.53 6.47 -52.49 -0.34 2.20 16 9 N -0.59 -15.20 3.20 -164.42 -0.53 -15.72 16 10 C 0.18 4.41 4.61 -2.74 -0.01 4.40 16 11 C -0.14 -2.68 6.33 -24.32 -0.15 -2.84 16 12 C -0.10 -1.74 3.68 -88.43 -0.33 -2.07 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.12 -1.97 5.02 -27.02 -0.14 -2.10 16 15 C 0.08 1.15 5.00 -4.02 -0.02 1.13 16 16 N -0.59 -11.07 2.98 -175.75 -0.52 -11.59 16 17 C 0.57 12.04 7.48 -12.64 -0.09 11.94 16 18 O -0.52 -13.30 16.32 5.23 0.09 -13.21 16 19 C -0.09 -1.67 5.69 -102.74 -0.58 -2.26 16 20 C -0.06 -0.81 7.43 -39.20 -0.29 -1.10 16 21 C -0.17 -1.75 9.83 -40.19 -0.39 -2.15 16 22 C -0.02 -0.24 10.02 -39.46 -0.40 -0.63 16 23 C -0.22 -2.95 6.34 -105.21 -0.67 -3.62 16 24 C 0.08 0.86 12.08 -16.59 -0.20 0.66 16 25 N -0.43 -5.66 7.18 30.86 0.22 -5.44 16 26 H 0.44 4.16 8.96 -182.69 -1.64 2.52 16 27 N -0.26 -5.21 12.64 34.35 0.43 -4.78 16 28 C 0.14 2.51 7.32 -80.98 -0.59 1.92 16 29 C 0.11 2.26 5.68 -4.78 -0.03 2.23 16 30 C 0.15 3.20 2.97 -68.30 -0.20 2.99 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.04 1.18 7.45 -51.93 -0.39 0.79 16 34 H 0.04 1.11 7.19 -51.93 -0.37 0.74 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.63 6.85 -51.93 -0.36 1.28 16 39 H 0.10 1.34 3.59 -51.97 -0.19 1.15 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.15 1.55 5.41 -52.49 -0.28 1.27 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.19 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.10 2.22 5.52 -51.93 -0.29 1.94 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -39.94 359.04 -10.89 -50.83 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.20 Total: 1.00 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -4.34 Total: 1.87 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: 0.19 Total: -65.64 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.02 Total: 19.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.94 -10.89 -50.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042177902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.079 kcal (2) G-P(sol) polarization free energy of solvation -39.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds