Wall clock time and date at job start Tue Mar 31 2020 23:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00379 * 2 1 4 4 H 1.48494 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46949 * 300.00312 * 3 2 1 6 6 H 1.48500 * 109.46612 * 59.99852 * 3 2 1 7 7 C 1.38813 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00742 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.39563 * 0.02562 * 9 7 2 11 11 C 1.55299 * 107.04339 * 184.96487 * 10 9 7 12 12 C 1.53702 * 101.84574 * 22.42980 * 11 10 9 13 13 H 1.08999 * 111.09803 * 78.60790 * 12 11 10 14 14 C 1.51974 * 115.01135 * 206.53815 * 12 11 10 15 15 C 1.53890 * 107.28687 * 175.45906 * 14 12 11 16 16 N 1.46597 * 110.70751 * 308.19664 * 15 14 12 17 17 C 1.34782 * 119.74644 * 227.74278 * 16 15 14 18 18 O 1.21646 * 119.99716 * 174.12718 * 17 16 15 19 19 C 1.47166 * 119.99982 * 354.12284 * 17 16 15 20 20 C 1.38590 * 120.72720 * 306.41920 * 19 17 16 21 21 C 1.38924 * 121.35805 * 179.69267 * 20 19 17 22 22 C 1.35821 * 122.59890 * 0.62412 * 21 20 19 23 23 C 1.40837 * 120.55979 * 359.67309 * 22 21 20 24 24 C 1.38425 * 134.89965 * 180.02562 * 23 22 21 25 25 N 1.33891 * 107.84233 * 179.97438 * 24 23 22 26 26 H 0.97009 * 125.01904 * 180.02562 * 25 24 23 27 27 N 1.39978 * 109.96659 * 359.97438 * 25 24 23 28 28 C 1.31479 * 109.01222 * 0.02562 * 27 25 24 29 29 C 1.47872 * 119.95060 * 48.23849 * 16 15 14 30 30 C 1.45508 * 126.40003 * 179.97438 * 9 7 2 31 31 H 1.09002 * 109.56788 * 266.66936 * 30 9 7 32 32 H 0.97001 * 119.99428 * 0.02562 * 1 2 3 33 33 H 1.09009 * 109.91770 * 65.61785 * 10 9 7 34 34 H 1.08996 * 110.09110 * 304.40513 * 10 9 7 35 35 H 1.08991 * 110.95976 * 140.58345 * 11 10 9 36 36 H 1.09006 * 110.95966 * 264.28588 * 11 10 9 37 37 H 1.08998 * 109.89717 * 294.91105 * 14 12 11 38 38 H 1.09011 * 109.88735 * 56.01988 * 14 12 11 39 39 H 1.08996 * 109.22583 * 68.50932 * 15 14 12 40 40 H 1.08997 * 109.22804 * 187.87866 * 15 14 12 41 41 H 1.08001 * 119.31402 * 359.97438 * 20 19 17 42 42 H 1.08008 * 118.69463 * 180.34190 * 21 20 19 43 43 H 1.08003 * 119.71997 * 179.69044 * 22 21 20 44 44 H 1.07996 * 126.08244 * 359.97438 * 24 23 22 45 45 H 1.08997 * 109.55762 * 188.62258 * 29 16 15 46 46 H 1.09000 * 110.55763 * 67.07554 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1469 -2.5531 -0.0005 11 6 -0.4345 -4.0738 0.1280 12 6 0.8679 -4.5888 0.7612 13 1 0.8915 -4.3843 1.8315 14 6 1.1965 -6.0423 0.4629 15 6 2.5762 -6.3349 1.0784 16 7 3.5595 -5.3381 0.6441 17 6 4.7625 -5.7399 0.1880 18 8 5.5408 -4.9266 -0.2729 19 6 5.1343 -7.1626 0.2477 20 6 5.0630 -7.8637 1.4410 21 6 5.4048 -9.2084 1.5110 22 6 5.8371 -9.9106 0.4318 23 6 5.9512 -9.2902 -0.8274 24 6 6.3454 -9.7037 -2.0882 25 7 6.2458 -8.6544 -2.9139 26 1 6.4607 -8.6680 -3.8597 27 7 5.7844 -7.5353 -2.2110 28 6 5.5934 -7.8681 -0.9535 29 6 3.2327 -3.8978 0.7181 30 6 1.9080 -3.7215 -0.0016 31 1 1.9987 -4.0794 -1.0271 32 1 -0.4849 0.8401 -0.0004 33 1 -0.5630 -2.1740 -0.9340 34 1 -0.5834 -2.0200 0.8440 35 1 -1.2855 -4.2555 0.7841 36 1 -0.5965 -4.5241 -0.8514 37 1 0.4449 -6.6921 0.9113 38 1 1.2300 -6.2013 -0.6151 39 1 2.4968 -6.3110 2.1652 40 1 2.9065 -7.3252 0.7649 41 1 4.7306 -7.3552 2.3340 42 1 5.3279 -9.7142 2.4623 43 1 6.0953 -10.9537 0.5402 44 1 6.6749 -10.6962 -2.3580 45 1 4.0102 -3.3211 0.2171 46 1 3.1398 -3.5793 1.7564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042177903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:28 Heat of formation + Delta-G solvation = 102.383473 kcal Electronic energy + Delta-G solvation = -29814.281713 eV Core-core repulsion = 25899.527711 eV Total energy + Delta-G solvation = -3914.754002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.48605 -40.02583 -38.18716 -36.95837 -35.24114 -32.82800 -32.34016 -31.25708 -31.01590 -29.64958 -28.75722 -28.23881 -25.14719 -24.52774 -23.68566 -22.25572 -21.94714 -21.58793 -20.02697 -19.61789 -18.94796 -18.21412 -17.43948 -16.68049 -16.39679 -15.91812 -15.22502 -15.21028 -14.94755 -14.74891 -14.31758 -14.17501 -13.82877 -13.65899 -13.41140 -13.14264 -12.88200 -12.64644 -12.28409 -12.19909 -11.98805 -11.93747 -11.74792 -11.43667 -11.21993 -10.86796 -10.76249 -10.71445 -10.68276 -10.50476 -10.05672 -9.89323 -9.79352 -9.62276 -9.50740 -9.38937 -9.04809 -8.56877 -8.30581 -7.84122 -6.78497 -5.65624 -2.98838 0.19269 1.57363 2.05886 2.39110 2.91241 3.20654 3.45978 3.52443 3.55449 3.63144 3.98229 4.22964 4.57158 4.63420 4.74921 4.94155 5.02100 5.03117 5.08988 5.14759 5.24698 5.37344 5.47736 5.60422 5.68340 5.70452 5.78296 5.85652 5.99210 6.08690 6.09811 6.12696 6.16748 6.22990 6.26213 6.27971 6.47472 6.54816 6.58559 6.64664 6.77015 6.80453 6.85407 7.15743 7.35130 7.62037 7.65697 7.70920 7.88012 8.29527 8.45398 9.26014 9.88808 10.55802 11.46894 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.003031 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.053972 B = 9235.672101 C = 9882.180591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.118 4.118 15 C 0.105 3.895 16 N -0.601 5.601 17 C 0.561 3.439 18 O -0.527 6.527 19 C -0.100 4.100 20 C -0.041 4.041 21 C -0.162 4.162 22 C -0.023 4.023 23 C -0.215 4.215 24 C 0.088 3.912 25 N -0.427 5.427 26 H 0.445 0.555 27 N -0.281 5.281 28 C 0.132 3.868 29 C 0.117 3.883 30 C 0.157 3.843 31 H 0.025 0.975 32 H 0.251 0.749 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.190 0.810 45 H 0.090 0.910 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -26.619 1.237 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.318 5.318 10 C 0.054 3.946 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.157 4.157 15 C -0.018 4.018 16 N -0.334 5.334 17 C 0.348 3.652 18 O -0.403 6.403 19 C -0.107 4.107 20 C -0.063 4.063 21 C -0.182 4.182 22 C -0.044 4.044 23 C -0.226 4.226 24 C -0.070 4.070 25 N -0.127 5.127 26 H 0.289 0.711 27 N -0.107 5.107 28 C -0.026 4.026 29 C -0.005 4.005 30 C 0.048 3.952 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.207 0.793 45 H 0.109 0.891 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.545 -24.900 0.081 26.326 hybrid contribution 0.542 0.164 -0.021 0.567 sum 9.087 -24.737 0.060 26.353 Atomic orbital electron populations 1.69958 1.04869 1.24842 1.57345 1.24775 0.95680 0.97603 1.02321 0.86073 0.78969 0.83852 0.77151 1.20354 1.21814 1.21808 1.19118 0.90505 0.82269 1.43390 0.90196 1.44183 1.01653 0.99237 1.86682 1.21529 0.83703 0.88476 1.00933 1.22730 0.96033 0.99654 0.99228 1.22286 0.97352 0.93474 1.00152 0.90395 1.21787 0.95344 0.97327 1.01235 1.21825 0.89258 0.91784 0.98910 1.48203 1.13651 1.07866 1.63710 1.18019 0.81914 0.87399 0.77858 1.90824 1.50844 1.54341 1.44315 1.19813 1.06456 0.93324 0.91081 1.21181 0.95056 0.94015 0.96074 1.20321 1.04631 0.94170 0.99054 1.20230 0.95159 0.98993 0.89979 1.19570 1.13787 0.94492 0.94708 1.22755 0.99932 0.94124 0.90150 1.46484 1.47133 1.07072 1.12032 0.71053 1.77775 1.23326 1.04403 1.05162 1.21534 0.97276 0.92405 0.91351 1.21760 0.99205 0.78307 1.01247 1.20999 0.91095 0.87491 0.95646 0.95752 0.93893 0.94547 0.92634 0.92271 0.92656 0.90899 0.91555 0.91719 0.90092 0.84760 0.85423 0.85663 0.79286 0.89116 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.55 10.44 55.49 0.58 -26.98 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.22 -6.42 9.88 -15.06 -0.15 -6.57 16 8 H 0.08 2.26 7.43 -52.49 -0.39 1.87 16 9 N -0.59 -15.44 3.35 -162.86 -0.55 -15.99 16 10 C 0.18 4.38 5.45 -1.91 -0.01 4.37 16 11 C -0.14 -2.60 6.54 -25.15 -0.16 -2.76 16 12 C -0.11 -1.99 2.60 -89.49 -0.23 -2.22 16 13 H 0.08 1.39 8.12 -51.93 -0.42 0.96 16 14 C -0.12 -1.64 5.72 -26.79 -0.15 -1.79 16 15 C 0.11 1.37 5.29 -3.53 -0.02 1.35 16 16 N -0.60 -10.21 3.00 -174.03 -0.52 -10.73 16 17 C 0.56 10.26 7.20 -12.63 -0.09 10.17 16 18 O -0.53 -11.95 16.51 5.24 0.09 -11.87 16 19 C -0.10 -1.47 4.68 -102.74 -0.48 -1.95 16 20 C -0.04 -0.44 7.79 -39.20 -0.31 -0.74 16 21 C -0.16 -1.32 9.83 -40.19 -0.39 -1.72 16 22 C -0.02 -0.18 10.02 -39.47 -0.40 -0.58 16 23 C -0.22 -2.18 6.34 -105.21 -0.67 -2.85 16 24 C 0.09 0.61 12.08 -16.59 -0.20 0.41 16 25 N -0.43 -3.84 7.18 30.86 0.22 -3.61 16 26 H 0.44 2.26 8.96 -182.68 -1.64 0.63 16 27 N -0.28 -4.25 12.67 34.36 0.44 -3.81 16 28 C 0.13 1.92 7.49 -80.98 -0.61 1.32 16 29 C 0.12 2.36 5.71 -3.90 -0.02 2.34 16 30 C 0.16 3.39 2.79 -67.79 -0.19 3.21 16 31 H 0.03 0.59 7.93 -51.93 -0.41 0.18 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.04 0.99 7.77 -51.92 -0.40 0.59 16 34 H 0.06 1.50 7.21 -51.93 -0.37 1.12 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.99 7.98 -51.92 -0.41 0.57 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.93 5.52 -51.93 -0.29 0.64 16 41 H 0.13 1.22 7.69 -52.49 -0.40 0.81 16 42 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 43 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 44 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 45 H 0.09 2.09 6.75 -51.93 -0.35 1.73 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -38.12 367.47 -11.02 -49.14 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.61 Total: -1.22 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -4.18 Total: 1.65 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.17 Total: -61.12 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.12 -11.02 -49.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042177903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.526 kcal (2) G-P(sol) polarization free energy of solvation -38.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds