Wall clock time and date at job start Tue Mar 31 2020 23:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99976 * 2 1 4 4 H 1.48501 * 109.47067 * 240.00082 * 3 2 1 5 5 H 1.48500 * 109.47411 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46956 * 120.00376 * 3 2 1 7 7 C 1.38815 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00289 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99662 * 359.97438 * 7 2 1 10 10 C 1.48156 * 126.40188 * 0.04255 * 9 7 2 11 11 C 1.55295 * 107.04497 * 184.96691 * 10 9 7 12 12 C 1.53697 * 101.81679 * 22.44340 * 11 10 9 13 13 H 1.09005 * 111.11528 * 78.60170 * 12 11 10 14 14 C 1.51979 * 115.00270 * 206.54858 * 12 11 10 15 15 C 1.53887 * 107.29642 * 175.43023 * 14 12 11 16 16 N 1.46641 * 110.79242 * 308.25685 * 15 14 12 17 17 C 1.34778 * 119.78012 * 227.67848 * 16 15 14 18 18 O 1.21792 * 120.00035 * 172.52784 * 17 16 15 19 19 C 1.41712 * 119.99770 * 352.52991 * 17 16 15 20 20 C 1.39181 * 125.86947 * 151.66661 * 19 17 16 21 21 C 1.38091 * 107.67366 * 179.83574 * 20 19 17 22 22 C 1.39503 * 107.56687 * 0.41855 * 21 20 19 23 23 C 1.40622 * 132.41699 * 179.71087 * 22 21 20 24 24 C 1.36294 * 119.16192 * 180.02562 * 23 22 21 25 25 C 1.39971 * 120.04073 * 0.02929 * 24 23 22 26 26 N 1.30651 * 120.98950 * 359.92875 * 25 24 23 27 27 N 1.37159 * 108.20657 * 359.73708 * 22 21 20 28 28 C 1.47796 * 120.46562 * 47.53595 * 16 15 14 29 29 C 1.45508 * 126.39534 * 179.97438 * 9 7 2 30 30 H 1.09002 * 109.57086 * 265.87793 * 29 9 7 31 31 H 0.97004 * 120.00205 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.91882 * 304.31685 * 10 9 7 33 33 H 1.09005 * 109.91793 * 65.62066 * 10 9 7 34 34 H 1.08995 * 110.96492 * 140.57584 * 11 10 9 35 35 H 1.08998 * 110.96254 * 264.31212 * 11 10 9 36 36 H 1.09003 * 109.89129 * 294.87484 * 14 12 11 37 37 H 1.08998 * 109.89388 * 55.97784 * 14 12 11 38 38 H 1.09001 * 109.23014 * 68.50305 * 15 14 12 39 39 H 1.08994 * 109.23237 * 187.91498 * 15 14 12 40 40 H 1.07991 * 126.16834 * 359.96172 * 20 19 17 41 41 H 1.07995 * 126.21881 * 180.19279 * 21 20 19 42 42 H 1.08002 * 120.42123 * 0.05700 * 23 22 21 43 43 H 1.08001 * 119.98008 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.50721 * 179.97438 * 25 24 23 45 45 H 1.09002 * 110.06270 * 189.66567 * 28 16 15 46 46 H 1.09003 * 110.06185 * 68.21496 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1468 -2.5531 -0.0009 11 6 -0.4344 -4.0738 0.1278 12 6 0.8680 -4.5879 0.7617 13 1 0.8913 -4.3829 1.8321 14 6 1.1973 -6.0413 0.4639 15 6 2.5772 -6.3332 1.0793 16 7 3.5615 -5.3359 0.6469 17 6 4.7655 -5.7368 0.1926 18 8 5.5335 -4.9263 -0.2938 19 6 5.1376 -7.1013 0.2810 20 6 6.0131 -7.7648 -0.5736 21 6 6.1076 -9.0736 -0.1435 22 6 5.2799 -9.2113 0.9710 23 6 4.9826 -10.3059 1.8023 24 6 4.1152 -10.1357 2.8396 25 6 3.5317 -8.8838 3.0670 26 7 3.8058 -7.8642 2.2975 27 7 4.6919 -7.9976 1.2207 28 6 3.2416 -3.8940 0.7027 29 6 1.9081 -3.7214 -0.0016 30 1 1.9858 -4.0851 -1.0262 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5805 -2.0203 0.8453 33 1 -0.5628 -2.1743 -0.9345 34 1 -1.2856 -4.2556 0.7839 35 1 -0.5957 -4.5244 -0.8515 36 1 0.4462 -6.6913 0.9127 37 1 1.2307 -6.2007 -0.6139 38 1 2.4980 -6.3089 2.1661 39 1 2.9082 -7.3231 0.7655 40 1 6.5277 -7.3334 -1.4194 41 1 6.7098 -9.8504 -0.5909 42 1 5.4363 -11.2691 1.6213 43 1 3.8778 -10.9672 3.4866 44 1 2.8452 -8.7587 3.8912 45 1 4.0127 -3.3198 0.1891 46 1 3.1620 -3.5686 1.7399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042259513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:38 Heat of formation + Delta-G solvation = 147.890316 kcal Electronic energy + Delta-G solvation = -30381.608331 eV Core-core repulsion = 26468.827654 eV Total energy + Delta-G solvation = -3912.780677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.40114 -39.85611 -38.34667 -37.28901 -35.40712 -33.70292 -32.81761 -31.18456 -30.69099 -30.03791 -28.63135 -28.28349 -25.14290 -24.73650 -24.03250 -22.78912 -22.22251 -21.38428 -20.10628 -19.94881 -19.28051 -17.90308 -17.51841 -16.56851 -16.42604 -16.30999 -15.72371 -15.44033 -14.88906 -14.69696 -14.24980 -14.06307 -13.81688 -13.70270 -13.52582 -13.28092 -12.88536 -12.84427 -12.59973 -12.46884 -12.35850 -12.07202 -11.80574 -11.49429 -11.38494 -11.11618 -10.84260 -10.75870 -10.63175 -10.42025 -10.12636 -9.93294 -9.80906 -9.69524 -9.57970 -9.39989 -9.14705 -8.57553 -8.30219 -7.97552 -6.80409 -5.66847 -3.00313 0.13822 0.76895 1.61325 2.14042 2.93777 3.20743 3.41547 3.46729 3.50260 3.52491 3.94877 4.17514 4.29317 4.55730 4.55945 4.75576 4.94793 5.02514 5.07936 5.14248 5.24616 5.34076 5.44554 5.47389 5.59846 5.67305 5.74867 5.79100 5.79524 5.84649 5.93977 5.99745 6.10291 6.14566 6.21895 6.26166 6.34760 6.43955 6.49289 6.57129 6.61800 6.78923 6.83247 7.12190 7.29996 7.59798 7.62928 7.68405 7.85627 8.27830 8.35751 9.24293 9.87158 10.54241 11.45545 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.003231 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.244829 B = 8664.718594 C = 9558.561011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.112 4.112 13 H 0.077 0.923 14 C -0.123 4.123 15 C 0.121 3.879 16 N -0.595 5.595 17 C 0.581 3.419 18 O -0.535 6.535 19 C -0.010 4.010 20 C -0.088 4.088 21 C -0.169 4.169 22 C -0.005 4.005 23 C -0.012 4.012 24 C -0.201 4.201 25 C 0.120 3.880 26 N -0.255 5.255 27 N -0.239 5.239 28 C 0.118 3.882 29 C 0.157 3.843 30 H 0.024 0.976 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.195 0.805 45 H 0.093 0.907 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -25.971 5.892 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.054 3.946 11 C -0.176 4.176 12 C -0.131 4.131 13 H 0.095 0.905 14 C -0.162 4.162 15 C -0.003 4.003 16 N -0.327 5.327 17 C 0.370 3.630 18 O -0.412 6.412 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.195 4.195 22 C -0.116 4.116 23 C -0.038 4.038 24 C -0.224 4.224 25 C -0.071 4.071 26 N -0.064 5.064 27 N -0.003 5.003 28 C -0.004 4.004 29 C 0.048 3.952 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.182 0.818 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.166 0.834 44 H 0.212 0.788 45 H 0.111 0.889 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.703 -24.108 5.756 25.434 hybrid contribution 0.477 -0.091 0.160 0.511 sum 6.179 -24.200 5.917 25.668 Atomic orbital electron populations 1.69936 1.04884 1.25116 1.57105 1.24775 0.95678 0.97615 1.02220 0.86215 0.78468 0.83187 0.78043 1.21091 1.21665 1.21122 1.19019 0.90450 0.82279 1.43783 0.90289 1.44165 1.01641 0.99187 1.86699 1.21534 0.83698 0.88423 1.00939 1.22732 0.96002 0.99713 0.99203 1.22263 0.97387 0.93342 1.00147 0.90501 1.21904 0.95830 0.97417 1.01018 1.22317 0.88150 0.90328 0.99480 1.48216 1.13759 1.08079 1.62683 1.15830 0.82323 0.85830 0.79034 1.90875 1.51895 1.53218 1.45260 1.19573 1.06469 0.91181 0.95492 1.21341 0.97375 0.93136 0.99449 1.21041 1.03451 0.97838 0.97166 1.19404 1.03451 0.87173 1.01534 1.20905 0.94026 0.97520 0.91375 1.21392 1.01198 0.98765 1.01029 1.24191 0.96968 0.90157 0.95816 1.76658 1.06239 1.26066 0.97400 1.45955 1.27056 1.08564 1.18708 1.21728 0.99162 0.78199 1.01355 1.20978 0.91012 0.87536 0.95628 0.95897 0.93763 0.92630 0.94467 0.92294 0.92647 0.91249 0.91805 0.90237 0.90757 0.81820 0.82676 0.82916 0.83419 0.78821 0.88863 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.49 10.44 55.49 0.58 -26.91 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.47 9.88 -15.06 -0.15 -6.62 16 8 H 0.08 2.21 7.41 -52.49 -0.39 1.82 16 9 N -0.59 -15.44 3.35 -162.88 -0.55 -15.98 16 10 C 0.18 4.39 5.45 -1.91 -0.01 4.38 16 11 C -0.14 -2.62 6.54 -25.15 -0.16 -2.79 16 12 C -0.11 -2.02 2.61 -89.50 -0.23 -2.25 16 13 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 14 C -0.12 -1.81 5.72 -26.79 -0.15 -1.96 16 15 C 0.12 1.77 4.23 -3.50 -0.01 1.75 16 16 N -0.59 -10.64 3.02 -176.07 -0.53 -11.17 16 17 C 0.58 10.75 7.40 -14.93 -0.11 10.64 16 18 O -0.53 -11.58 16.30 5.11 0.08 -11.50 16 19 C -0.01 -0.15 5.97 -83.74 -0.50 -0.65 16 20 C -0.09 -1.11 10.62 -39.29 -0.42 -1.52 16 21 C -0.17 -1.65 10.92 -39.16 -0.43 -2.08 16 22 C 0.00 -0.05 6.80 -84.11 -0.57 -0.62 16 23 C -0.01 -0.08 10.11 -39.38 -0.40 -0.47 16 24 C -0.20 -1.07 10.04 -39.63 -0.40 -1.47 16 25 C 0.12 0.83 11.29 -17.41 -0.20 0.64 16 26 N -0.26 -2.88 6.72 30.61 0.21 -2.67 16 27 N -0.24 -3.07 3.06 -8.28 -0.03 -3.10 16 28 C 0.12 2.43 5.70 -3.94 -0.02 2.40 16 29 C 0.16 3.43 2.77 -67.80 -0.19 3.25 16 30 H 0.02 0.55 7.90 -51.93 -0.41 0.14 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.06 1.50 7.21 -51.93 -0.37 1.13 16 33 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.99 7.97 -51.93 -0.41 0.57 16 38 H 0.08 1.11 6.81 -51.93 -0.35 0.76 16 39 H 0.07 1.05 4.36 -51.93 -0.23 0.82 16 40 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.15 0.30 8.06 -52.49 -0.42 -0.13 16 44 H 0.20 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.09 2.13 6.74 -51.93 -0.35 1.78 16 46 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -35.48 360.74 -10.15 -45.64 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.28 Total: 0.15 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -4.05 Total: 2.34 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.32 Total: -59.84 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.48 -10.15 -45.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042259513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.528 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds