Wall clock time and date at job start Tue Mar 31 2020 23:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00247 * 2 1 4 4 H 1.48494 * 109.46782 * 269.99926 * 3 2 1 5 5 H 1.48499 * 109.46932 * 29.99959 * 3 2 1 6 6 H 1.48501 * 109.47057 * 149.99894 * 3 2 1 7 7 C 1.38812 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.47429 * 126.05947 * 0.02942 * 9 7 2 11 11 C 1.54500 * 107.30009 * 181.51875 * 10 9 7 12 12 C 1.56493 * 102.40219 * 22.89795 * 11 10 9 13 13 H 1.08991 * 113.46456 * 202.60624 * 12 11 10 14 14 C 1.53091 * 106.41341 * 78.37169 * 12 11 10 15 15 C 1.52833 * 110.58404 * 195.41535 * 14 12 11 16 16 N 1.47157 * 107.97788 * 57.34421 * 15 14 12 17 17 C 1.34776 * 121.22312 * 122.68381 * 16 15 14 18 18 O 1.21664 * 120.00026 * 175.69550 * 17 16 15 19 19 C 1.46935 * 119.99663 * 355.68242 * 17 16 15 20 20 C 1.36471 * 126.72428 * 50.03636 * 19 17 16 21 21 N 1.35356 * 109.77344 * 179.97438 * 20 19 17 22 22 H 0.97008 * 124.82549 * 179.97438 * 21 20 19 23 23 C 1.37860 * 110.35157 * 0.02562 * 21 20 19 24 24 C 1.39226 * 133.47414 * 180.02562 * 23 21 20 25 25 C 1.38337 * 118.29690 * 179.97438 * 24 23 21 26 26 C 1.38608 * 119.64088 * 359.97438 * 25 24 23 27 27 N 1.31630 * 121.19603 * 0.02562 * 26 25 24 28 28 C 1.32701 * 121.42298 * 359.71942 * 27 26 25 29 29 C 1.46761 * 117.55425 * 302.69911 * 16 15 14 30 30 C 1.46466 * 126.05645 * 180.02562 * 9 7 2 31 31 H 1.09000 * 108.42912 * 269.26087 * 30 9 7 32 32 H 0.97004 * 119.99651 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.89868 * 300.98397 * 10 9 7 34 34 H 1.08998 * 109.90949 * 62.04149 * 10 9 7 35 35 H 1.08992 * 110.78697 * 141.22152 * 11 10 9 36 36 H 1.09004 * 110.77964 * 264.66172 * 11 10 9 37 37 H 1.08996 * 109.25594 * 75.13011 * 14 12 11 38 38 H 1.09004 * 109.22590 * 315.68058 * 14 12 11 39 39 H 1.09000 * 109.75827 * 297.72309 * 15 14 12 40 40 H 1.09002 * 109.80488 * 176.98589 * 15 14 12 41 41 H 1.07997 * 125.11486 * 359.97267 * 20 19 17 42 42 H 1.07993 * 120.85334 * 0.02562 * 24 23 21 43 43 H 1.07993 * 120.18029 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.39933 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.22697 * 292.22143 * 29 16 15 46 46 H 1.09001 * 109.22523 * 172.86557 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1406 -2.5436 -0.0006 11 6 -0.4419 -4.0584 0.0390 12 6 0.8713 -4.6464 0.6544 13 1 1.0288 -5.6984 0.4169 14 6 0.7943 -4.3916 2.1620 15 6 2.1670 -4.5745 2.8087 16 7 3.1072 -3.6569 2.1458 17 6 3.7982 -2.7372 2.8480 18 8 4.6271 -2.0428 2.2904 19 6 3.5502 -2.5731 4.2870 20 6 3.5187 -3.5614 5.2275 21 7 3.2624 -3.0273 6.4446 22 1 3.1918 -3.5345 7.2685 23 6 3.1147 -1.6601 6.3467 24 6 2.8487 -0.6565 7.2743 25 6 2.7649 0.6484 6.8227 26 6 2.9460 0.9206 5.4757 27 7 3.1968 -0.0417 4.6134 28 6 3.2918 -1.3081 4.9982 29 6 3.2647 -3.7799 0.6918 30 6 1.9198 -3.7267 0.0016 31 1 2.0482 -4.0475 -1.0322 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5659 -2.0576 0.8775 34 1 -0.5597 -2.1054 -0.9064 35 1 -1.2988 -4.2658 0.6798 36 1 -0.6067 -4.4464 -0.9663 37 1 0.0899 -5.0927 2.6096 38 1 0.4476 -3.3730 2.3367 39 1 2.5019 -5.6035 2.6776 40 1 2.1091 -4.3384 3.8712 41 1 3.6747 -4.6117 5.0305 42 1 2.7121 -0.8906 8.3196 43 1 2.5594 1.4506 7.5158 44 1 2.8801 1.9408 5.1275 45 1 3.7489 -4.7291 0.4622 46 1 3.8876 -2.9628 0.3279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042314903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:40 Heat of formation + Delta-G solvation = 83.275961 kcal Electronic energy + Delta-G solvation = -31167.124692 eV Core-core repulsion = 27251.542126 eV Total energy + Delta-G solvation = -3915.582566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.66399 -39.63803 -37.97586 -37.53772 -34.79478 -32.75685 -32.66081 -31.14405 -30.28282 -29.67407 -28.60763 -28.20980 -24.66719 -24.16903 -23.77816 -22.62512 -22.30522 -21.91397 -19.88639 -19.26588 -18.41244 -17.76021 -16.90155 -16.42508 -16.36438 -15.90451 -15.18792 -15.07580 -14.69126 -14.62988 -14.30234 -14.01969 -13.82565 -13.38856 -13.24917 -13.02501 -12.67933 -12.60039 -12.49159 -12.41901 -12.08237 -11.81664 -11.51127 -11.27729 -11.11941 -10.80186 -10.63722 -10.53427 -10.21966 -9.94294 -9.74935 -9.71329 -9.53467 -9.35726 -9.31409 -8.99907 -8.44429 -8.36186 -8.10341 -7.90325 -6.60939 -5.47841 -2.79207 0.95460 1.40922 2.24331 2.82052 3.29093 3.62337 3.66841 3.78239 3.80946 4.12997 4.31390 4.60730 4.75902 4.79966 4.95077 5.00590 5.16202 5.18911 5.24523 5.40102 5.50525 5.52324 5.59541 5.65402 5.75425 5.79413 5.84914 5.92571 6.07632 6.11894 6.14369 6.22319 6.26189 6.37107 6.37804 6.40019 6.54351 6.60751 6.72124 6.86805 6.90827 7.05804 7.19226 7.26029 7.73690 7.77835 8.05854 8.07481 8.32225 8.46017 8.90504 9.45604 10.07137 10.69843 11.64644 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.005831 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.355389 B = 4800.442403 C = 6414.900876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.005 4.005 3 Si 0.902 3.098 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.209 4.209 8 H 0.081 0.919 9 N -0.587 5.587 10 C 0.179 3.821 11 C -0.143 4.143 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.122 4.122 15 C 0.105 3.895 16 N -0.591 5.591 17 C 0.598 3.402 18 O -0.523 6.523 19 C -0.185 4.185 20 C 0.097 3.903 21 N -0.578 5.578 22 H 0.419 0.581 23 C 0.035 3.965 24 C -0.084 4.084 25 C -0.158 4.158 26 C 0.097 3.903 27 N -0.425 5.425 28 C 0.138 3.862 29 C 0.116 3.884 30 C 0.154 3.846 31 H 0.025 0.975 32 H 0.247 0.753 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.185 0.815 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.158 0.842 45 H 0.054 0.946 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -11.604 16.246 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.733 3.267 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.337 4.337 8 H 0.098 0.902 9 N -0.312 5.312 10 C 0.054 3.946 11 C -0.181 4.181 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.160 4.160 15 C -0.018 4.018 16 N -0.324 5.324 17 C 0.385 3.615 18 O -0.398 6.398 19 C -0.197 4.197 20 C -0.035 4.035 21 N -0.181 5.181 22 H 0.257 0.743 23 C -0.073 4.073 24 C -0.113 4.113 25 C -0.179 4.179 26 C -0.069 4.069 27 N -0.132 5.132 28 C 0.004 3.996 29 C -0.007 4.007 30 C 0.045 3.955 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.202 0.798 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.175 0.825 45 H 0.072 0.928 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.390 -10.872 15.105 18.917 hybrid contribution -0.048 0.501 1.338 1.429 sum 3.342 -10.371 16.443 19.725 Atomic orbital electron populations 1.69965 1.04836 1.24541 1.58333 1.24646 0.95515 0.97414 1.02456 0.86202 0.79678 0.83799 0.77046 1.22214 1.22052 1.19732 1.19008 0.90523 0.81951 1.42181 0.90165 1.44272 1.01279 0.99250 1.86400 1.21193 0.84484 0.88150 1.00756 1.23230 0.95990 0.99834 0.99088 1.22458 0.97220 0.97644 0.94816 0.90759 1.21815 0.95638 1.03242 0.95356 1.21800 0.90093 0.92606 0.97330 1.47657 1.42054 1.34877 1.07829 1.16933 0.80830 0.79148 0.84542 1.90788 1.34181 1.44173 1.70647 1.20019 1.14817 0.90769 0.94108 1.22042 0.99797 0.98436 0.83193 1.41230 1.62053 1.05368 1.09453 0.74332 1.19069 1.06650 0.84540 0.97058 1.20413 1.01640 0.91065 0.98181 1.21877 1.02363 0.96154 0.97540 1.22762 0.96579 0.98498 0.89085 1.67153 1.09211 0.98938 1.37902 1.19476 1.00343 0.90917 0.88844 1.21375 0.98890 1.01396 0.79016 1.20697 0.91167 0.87907 0.95712 0.95735 0.94291 0.93854 0.94179 0.92440 0.92790 0.92390 0.90144 0.91961 0.90321 0.79774 0.85117 0.84354 0.82505 0.92829 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 10.38 55.49 0.58 -28.22 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.90 24.89 29.55 -169.99 -5.02 19.86 16 4 H -0.29 -7.98 7.11 56.52 0.40 -7.58 16 5 H -0.29 -8.08 7.11 56.52 0.40 -7.67 16 6 H -0.27 -7.74 7.11 56.52 0.40 -7.34 16 7 C -0.21 -6.15 9.70 -15.06 -0.15 -6.30 16 8 H 0.08 2.45 6.51 -52.49 -0.34 2.11 16 9 N -0.59 -15.16 3.20 -164.43 -0.53 -15.68 16 10 C 0.18 4.43 4.60 -2.75 -0.01 4.42 16 11 C -0.14 -2.67 6.36 -24.06 -0.15 -2.82 16 12 C -0.10 -1.72 3.68 -88.17 -0.32 -2.04 16 13 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.12 -1.96 5.05 -26.77 -0.14 -2.09 16 15 C 0.11 1.47 5.97 -3.77 -0.02 1.45 16 16 N -0.59 -10.94 2.97 -175.54 -0.52 -11.46 16 17 C 0.60 12.60 7.60 -12.74 -0.10 12.51 16 18 O -0.52 -13.38 16.58 5.22 0.09 -13.29 16 19 C -0.19 -3.28 5.37 -103.28 -0.55 -3.83 16 20 C 0.10 1.11 9.48 -16.63 -0.16 0.95 16 21 N -0.58 -5.65 5.98 -10.46 -0.06 -5.71 16 22 H 0.42 2.21 8.96 -40.82 -0.37 1.84 16 23 C 0.03 0.47 7.27 -83.94 -0.61 -0.14 16 24 C -0.08 -0.95 10.19 -39.18 -0.40 -1.35 16 25 C -0.16 -1.89 10.09 -39.41 -0.40 -2.29 16 26 C 0.10 1.56 11.16 -17.50 -0.20 1.37 16 27 N -0.43 -8.92 10.41 -9.70 -0.10 -9.03 16 28 C 0.14 2.60 7.51 -82.91 -0.62 1.98 16 29 C 0.12 2.27 5.67 -4.78 -0.03 2.24 16 30 C 0.15 3.17 2.97 -68.31 -0.20 2.97 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.04 1.21 7.04 -51.93 -0.37 0.84 16 34 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 35 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.67 6.85 -51.93 -0.36 1.31 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.97 4.49 -51.93 -0.23 0.74 16 41 H 0.19 1.32 7.50 -52.49 -0.39 0.92 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 46 H 0.10 2.20 5.56 -51.93 -0.29 1.91 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -40.08 362.34 -10.36 -50.43 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.09 Total: 0.85 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -4.15 Total: 6.78 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -0.63 Total: -70.10 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.02 Total: 19.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.08 -10.36 -50.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042314903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.710 kcal (2) G-P(sol) polarization free energy of solvation -40.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds