Wall clock time and date at job start Tue Mar 31 2020 23:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00247 * 2 1 4 4 H 1.48494 * 109.46782 * 269.99926 * 3 2 1 5 5 H 1.48499 * 109.46932 * 29.99959 * 3 2 1 6 6 H 1.48501 * 109.47057 * 149.99894 * 3 2 1 7 7 C 1.38812 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.47429 * 126.05947 * 0.02942 * 9 7 2 11 11 C 1.54500 * 107.30009 * 181.51875 * 10 9 7 12 12 C 1.56493 * 102.40219 * 22.89795 * 11 10 9 13 13 H 1.08991 * 113.46456 * 202.60624 * 12 11 10 14 14 C 1.53091 * 106.41341 * 78.37169 * 12 11 10 15 15 C 1.52833 * 110.58404 * 195.41535 * 14 12 11 16 16 N 1.47157 * 107.97788 * 57.34421 * 15 14 12 17 17 C 1.34776 * 121.22312 * 122.68381 * 16 15 14 18 18 O 1.21664 * 120.00026 * 175.69550 * 17 16 15 19 19 C 1.46935 * 119.99663 * 355.68242 * 17 16 15 20 20 C 1.36471 * 126.72428 * 50.03636 * 19 17 16 21 21 N 1.35356 * 109.77344 * 179.97438 * 20 19 17 22 22 H 0.97008 * 124.82549 * 179.97438 * 21 20 19 23 23 C 1.37860 * 110.35157 * 0.02562 * 21 20 19 24 24 C 1.39226 * 133.47414 * 180.02562 * 23 21 20 25 25 C 1.38337 * 118.29690 * 179.97438 * 24 23 21 26 26 C 1.38608 * 119.64088 * 359.97438 * 25 24 23 27 27 N 1.31630 * 121.19603 * 0.02562 * 26 25 24 28 28 C 1.32701 * 121.42298 * 359.71942 * 27 26 25 29 29 C 1.46761 * 117.55425 * 302.69911 * 16 15 14 30 30 C 1.46466 * 126.05645 * 180.02562 * 9 7 2 31 31 H 1.09000 * 108.42912 * 269.26087 * 30 9 7 32 32 H 0.97004 * 119.99651 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.89868 * 300.98397 * 10 9 7 34 34 H 1.08998 * 109.90949 * 62.04149 * 10 9 7 35 35 H 1.08992 * 110.78697 * 141.22152 * 11 10 9 36 36 H 1.09004 * 110.77964 * 264.66172 * 11 10 9 37 37 H 1.08996 * 109.25594 * 75.13011 * 14 12 11 38 38 H 1.09004 * 109.22590 * 315.68058 * 14 12 11 39 39 H 1.09000 * 109.75827 * 297.72309 * 15 14 12 40 40 H 1.09002 * 109.80488 * 176.98589 * 15 14 12 41 41 H 1.07997 * 125.11486 * 359.97267 * 20 19 17 42 42 H 1.07993 * 120.85334 * 0.02562 * 24 23 21 43 43 H 1.07993 * 120.18029 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.39933 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.22697 * 292.22143 * 29 16 15 46 46 H 1.09001 * 109.22523 * 172.86557 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1406 -2.5436 -0.0006 11 6 -0.4419 -4.0584 0.0390 12 6 0.8713 -4.6464 0.6544 13 1 1.0288 -5.6984 0.4169 14 6 0.7943 -4.3916 2.1620 15 6 2.1670 -4.5745 2.8087 16 7 3.1072 -3.6569 2.1458 17 6 3.7982 -2.7372 2.8480 18 8 4.6271 -2.0428 2.2904 19 6 3.5502 -2.5731 4.2870 20 6 3.5187 -3.5614 5.2275 21 7 3.2624 -3.0273 6.4446 22 1 3.1918 -3.5345 7.2685 23 6 3.1147 -1.6601 6.3467 24 6 2.8487 -0.6565 7.2743 25 6 2.7649 0.6484 6.8227 26 6 2.9460 0.9206 5.4757 27 7 3.1968 -0.0417 4.6134 28 6 3.2918 -1.3081 4.9982 29 6 3.2647 -3.7799 0.6918 30 6 1.9198 -3.7267 0.0016 31 1 2.0482 -4.0475 -1.0322 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5659 -2.0576 0.8775 34 1 -0.5597 -2.1054 -0.9064 35 1 -1.2988 -4.2658 0.6798 36 1 -0.6067 -4.4464 -0.9663 37 1 0.0899 -5.0927 2.6096 38 1 0.4476 -3.3730 2.3367 39 1 2.5019 -5.6035 2.6776 40 1 2.1091 -4.3384 3.8712 41 1 3.6747 -4.6117 5.0305 42 1 2.7121 -0.8906 8.3196 43 1 2.5594 1.4506 7.5158 44 1 2.8801 1.9408 5.1275 45 1 3.7489 -4.7291 0.4622 46 1 3.8876 -2.9628 0.3279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042314903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:39 Heat of formation + Delta-G solvation = 51.707394 kcal Electronic energy + Delta-G solvation = -31168.493608 eV Core-core repulsion = 27251.542126 eV Total energy + Delta-G solvation = -3916.951482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.70648 -41.12194 -39.40120 -38.81191 -36.44649 -34.62268 -33.83244 -32.82606 -31.60731 -30.84642 -30.09344 -29.90050 -26.51237 -25.87604 -24.85597 -23.90984 -23.54554 -23.16354 -21.73187 -20.67637 -19.72012 -18.95788 -18.43729 -17.98089 -17.60942 -17.12405 -16.88618 -16.42194 -16.25328 -15.97295 -15.72704 -15.64927 -15.43510 -15.04122 -14.44379 -14.24602 -14.09641 -14.01331 -13.72389 -13.62720 -13.59205 -13.23875 -13.15221 -13.03703 -12.93915 -12.66737 -12.53010 -12.31162 -12.08430 -11.67479 -11.38199 -11.29805 -11.26119 -11.11670 -10.79290 -10.66701 -10.18330 -9.50627 -9.45127 -9.06554 -8.78371 -7.85155 -5.13008 -0.02108 0.31235 1.16697 1.28362 1.32792 1.48300 1.86571 1.96936 2.47540 2.49419 2.96811 3.34048 3.34971 3.53413 3.69400 3.80295 3.91043 3.97213 3.98560 4.12532 4.13074 4.30254 4.35664 4.38408 4.52383 4.56264 4.63504 4.66147 4.69312 4.73836 4.82502 4.90283 4.93774 5.05617 5.11085 5.17068 5.18529 5.23022 5.33604 5.36207 5.52806 5.68410 5.74503 5.80319 5.83014 5.87985 6.23979 6.52843 6.67673 7.16255 7.21464 7.44329 7.84921 8.45946 9.25462 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.005831 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.355389 B = 4800.442403 C = 6414.900876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.949 3.051 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.195 4.195 8 H 0.058 0.942 9 N -0.604 5.604 10 C 0.186 3.814 11 C -0.128 4.128 12 C -0.082 4.082 13 H 0.131 0.869 14 C -0.120 4.120 15 C 0.102 3.898 16 N -0.592 5.592 17 C 0.588 3.412 18 O -0.597 6.597 19 C -0.261 4.261 20 C 0.156 3.844 21 N -0.546 5.546 22 H 0.448 0.552 23 C 0.034 3.966 24 C -0.064 4.064 25 C -0.154 4.154 26 C 0.072 3.928 27 N -0.513 5.513 28 C 0.087 3.913 29 C 0.118 3.882 30 C 0.139 3.861 31 H 0.029 0.971 32 H 0.241 0.759 33 H 0.000 1.000 34 H -0.003 1.003 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.020 0.980 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.241 0.759 42 H 0.186 0.814 43 H 0.181 0.819 44 H 0.155 0.845 45 H 0.101 0.899 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 -16.752 20.184 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.253 4.253 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.325 4.325 8 H 0.076 0.924 9 N -0.329 5.329 10 C 0.061 3.939 11 C -0.166 4.166 12 C -0.101 4.101 13 H 0.148 0.852 14 C -0.158 4.158 15 C -0.019 4.019 16 N -0.323 5.323 17 C 0.378 3.622 18 O -0.478 6.478 19 C -0.272 4.272 20 C 0.021 3.979 21 N -0.150 5.150 22 H 0.292 0.708 23 C -0.075 4.075 24 C -0.092 4.092 25 C -0.174 4.174 26 C -0.094 4.094 27 N -0.222 5.222 28 C -0.046 4.046 29 C -0.005 4.005 30 C 0.032 3.968 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.015 0.985 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.039 0.961 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.257 0.743 42 H 0.203 0.797 43 H 0.198 0.802 44 H 0.172 0.828 45 H 0.119 0.881 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.664 -16.093 19.094 25.113 hybrid contribution 0.206 2.055 0.162 2.072 sum 2.870 -14.038 19.256 24.002 Atomic orbital electron populations 1.70136 1.05325 1.24228 1.60190 1.25194 0.96313 0.99658 1.04146 0.85472 0.77553 0.81748 0.77194 1.20808 1.21675 1.22275 1.18951 0.89755 0.83970 1.39797 0.92434 1.44443 1.02177 1.00383 1.85923 1.20951 0.83541 0.92704 0.96661 1.23090 0.98080 0.94417 1.01023 1.22529 0.93449 0.99195 0.94912 0.85152 1.21799 0.97899 1.00938 0.95197 1.22218 0.87803 0.94100 0.97767 1.47832 1.42142 1.35048 1.07274 1.17620 0.79947 0.78290 0.86306 1.90721 1.37533 1.46917 1.72602 1.19961 1.21211 0.92735 0.93327 1.22641 0.94145 0.99192 0.81893 1.41191 1.59563 1.04007 1.10245 0.70833 1.19148 1.06484 0.86543 0.95298 1.21023 0.98369 0.89755 1.00096 1.22235 1.01069 0.98189 0.95951 1.23048 0.97215 0.97946 0.91159 1.66979 1.12814 1.01228 1.41177 1.19990 1.02110 0.90640 0.91897 1.21257 0.97524 1.01634 0.80119 1.21075 0.93022 0.86026 0.96660 0.95378 0.95007 0.98179 0.98451 0.90029 0.91129 0.87745 0.96131 0.86398 0.88493 0.74316 0.79687 0.80165 0.82803 0.88113 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.11 10.38 21.65 0.22 -62.89 16 2 C -0.06 -3.99 5.49 84.86 0.47 -3.52 16 3 Si 0.95 55.62 29.55 68.60 2.03 57.65 16 4 H -0.28 -15.66 7.11 99.48 0.71 -14.95 16 5 H -0.29 -16.65 7.11 99.48 0.71 -15.94 16 6 H -0.30 -18.33 7.11 99.48 0.71 -17.62 16 7 C -0.19 -12.43 9.70 84.03 0.81 -11.61 16 8 H 0.06 3.89 6.51 -2.91 -0.02 3.87 16 9 N -0.60 -32.89 3.20 -674.15 -2.15 -35.05 16 10 C 0.19 9.67 4.60 86.71 0.40 10.07 16 11 C -0.13 -4.50 6.36 32.32 0.21 -4.30 16 12 C -0.08 -2.44 3.68 -9.21 -0.03 -2.47 16 13 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 14 C -0.12 -3.40 5.05 30.57 0.15 -3.24 16 15 C 0.10 2.40 5.97 86.20 0.51 2.92 16 16 N -0.59 -21.58 2.97 -827.51 -2.46 -24.04 16 17 C 0.59 26.04 7.60 86.52 0.66 26.69 16 18 O -0.60 -33.68 16.58 -4.23 -0.07 -33.75 16 19 C -0.26 -9.29 5.37 -19.00 -0.10 -9.39 16 20 C 0.16 2.93 9.48 83.74 0.79 3.73 16 21 N -0.55 -8.04 5.98 -187.02 -1.12 -9.15 16 22 H 0.45 1.69 8.96 -92.70 -0.83 0.86 16 23 C 0.03 0.84 7.27 38.98 0.28 1.13 16 24 C -0.06 -1.22 10.19 22.53 0.23 -0.99 16 25 C -0.15 -3.46 10.09 22.38 0.23 -3.24 16 26 C 0.07 2.49 11.16 84.81 0.95 3.43 16 27 N -0.51 -23.63 10.41 -184.61 -1.92 -25.55 16 28 C 0.09 3.40 7.51 41.98 0.32 3.72 16 29 C 0.12 4.63 5.67 85.76 0.49 5.11 16 30 C 0.14 5.67 2.97 44.76 0.13 5.81 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.00 0.00 7.04 -2.38 -0.02 -0.02 16 34 H 0.00 -0.16 7.56 -2.39 -0.02 -0.18 16 35 H 0.08 2.51 7.98 -2.39 -0.02 2.49 16 36 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.02 0.83 6.85 -2.38 -0.02 0.81 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.91 4.49 -2.39 -0.01 1.90 16 41 H 0.24 1.68 7.50 -2.91 -0.02 1.66 16 42 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.15 4.90 8.06 -2.91 -0.02 4.88 16 45 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 46 H 0.04 2.11 5.56 -2.39 -0.01 2.09 16 Total: -1.00 -108.98 362.34 1.22 -107.76 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 0.20 Total: 1.18 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.49 Total: 23.84 kcal Atomic # 7 Polarization: -149.25 SS G_CDS: -7.43 Total: -156.68 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.07 Total: -33.75 kcal Atomic # 14 Polarization: 55.62 SS G_CDS: 2.03 Total: 57.65 kcal Total: -108.98 1.22 -107.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042314903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.470 kcal (2) G-P(sol) polarization free energy of solvation -108.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds