Wall clock time and date at job start Tue Mar 31 2020 23:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 120.00259 * 2 1 4 4 O 1.21559 * 119.99748 * 186.69186 * 3 2 1 5 5 C 1.47766 * 119.99579 * 6.68737 * 3 2 1 6 6 C 1.40655 * 119.75182 * 21.13704 * 5 3 2 7 7 C 1.35719 * 120.84570 * 179.70891 * 6 5 3 8 8 C 1.40707 * 120.02438 * 0.55401 * 7 6 5 9 9 C 1.40480 * 121.04620 * 179.65466 * 8 7 6 10 10 C 1.36139 * 119.72330 * 180.02562 * 9 8 7 11 11 C 1.39364 * 121.00951 * 0.04384 * 10 9 8 12 12 C 1.36092 * 120.95196 * 0.02562 * 11 10 9 13 13 C 1.40650 * 119.66307 * 359.97438 * 12 11 10 14 14 C 1.38492 * 119.74738 * 201.40434 * 5 3 2 15 15 C 1.46502 * 120.00084 * 179.97438 * 2 1 3 16 16 H 1.09001 * 110.91792 * 183.89748 * 15 2 1 17 17 C 1.54914 * 111.00356 * 307.80503 * 15 2 1 18 18 N 1.47747 * 104.83833 * 155.16672 * 17 15 2 19 19 C 1.36942 * 125.82080 * 155.82987 * 18 17 15 20 20 H 1.08002 * 119.99944 * 359.93417 * 19 18 17 21 21 C 1.38807 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00225 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99734 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47259 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47031 * 120.00807 * 23 21 19 26 26 H 1.48504 * 109.47094 * 240.00466 * 23 21 19 27 27 C 1.47022 * 108.53385 * 335.74811 * 18 17 15 28 28 C 1.54332 * 107.39791 * 1.18431 * 27 18 17 29 29 H 1.08997 * 110.71770 * 263.75080 * 28 27 18 30 30 O 1.42899 * 110.71749 * 140.47871 * 28 27 18 31 31 H 1.09001 * 109.46898 * 268.39266 * 1 2 3 32 32 H 1.09003 * 109.47290 * 28.39190 * 1 2 3 33 33 H 1.09000 * 109.47216 * 148.39729 * 1 2 3 34 34 H 1.08001 * 119.57594 * 359.97350 * 6 5 3 35 35 H 1.08007 * 119.98629 * 180.28076 * 7 6 5 36 36 H 1.08002 * 120.14091 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.49727 * 180.02562 * 10 9 8 38 38 H 1.07993 * 119.52558 * 179.97438 * 11 10 9 39 39 H 1.08008 * 120.16873 * 180.02562 * 12 11 10 40 40 H 1.08003 * 120.27486 * 359.97438 * 14 5 3 41 41 H 1.08998 * 110.36813 * 273.91977 * 17 15 2 42 42 H 1.08996 * 110.36615 * 36.13240 * 17 15 2 43 43 H 0.97010 * 119.99843 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.88565 * 241.69234 * 27 18 17 45 45 H 1.08994 * 109.88380 * 120.67147 * 27 18 17 46 46 H 0.96695 * 114.00037 * 61.45458 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3483 1.1707 -0.1227 5 6 1.4076 2.4425 0.1490 6 6 0.1236 2.4478 0.7231 7 6 -0.5655 3.6070 0.8760 8 6 -0.0018 4.8230 0.4475 9 6 -0.6990 6.0343 0.5887 10 6 -0.1282 7.1951 0.1644 11 6 1.1410 7.2026 -0.4112 12 6 1.8462 6.0490 -0.5659 13 6 1.2890 4.8300 -0.1394 14 6 1.9895 3.6228 -0.2827 15 6 2.1975 -1.2687 0.0006 16 1 3.2718 -1.0978 0.0697 17 6 1.7074 -2.1923 1.1436 18 7 2.0290 -3.5607 0.6886 19 6 2.2212 -4.6496 1.4966 20 1 2.1418 -4.5471 2.5688 21 6 2.5189 -5.8847 0.9375 22 7 2.6170 -6.0093 -0.3691 23 14 2.7819 -7.3698 2.0397 24 1 2.6180 -6.9676 3.4597 25 1 1.7848 -8.4179 1.7042 26 1 4.1515 -7.9047 1.8312 27 6 2.1063 -3.5589 -0.7796 28 6 1.8483 -2.1130 -1.2535 29 1 0.8026 -1.9786 -1.5299 30 8 2.7083 -1.7775 -2.3443 31 1 -0.3633 -0.0288 1.0273 32 1 -0.3634 0.9041 -0.4887 33 1 -0.3634 -0.8753 -0.5385 34 1 -0.3179 1.5181 1.0503 35 1 -1.5488 3.5956 1.3227 36 1 -1.6838 6.0448 1.0322 37 1 -0.6673 8.1244 0.2751 38 1 1.5709 8.1372 -0.7399 39 1 2.8291 6.0695 -1.0132 40 1 2.9740 3.6140 -0.7265 41 1 2.2391 -1.9667 2.0680 42 1 0.6329 -2.0800 1.2878 43 1 2.8254 -6.8724 -0.7598 44 1 1.3482 -4.2249 -1.1916 45 1 3.0969 -3.8824 -1.0990 46 1 2.5830 -2.3297 -3.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047607513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:03 Heat of formation + Delta-G solvation = 21.639810 kcal Electronic energy + Delta-G solvation = -29047.935194 eV Core-core repulsion = 25097.387133 eV Total energy + Delta-G solvation = -3950.548061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.91368 -39.70682 -37.90006 -36.44062 -35.27508 -34.80008 -32.96615 -32.06170 -30.72135 -29.52962 -28.52391 -27.44176 -26.85216 -24.86589 -23.81312 -23.29819 -22.17756 -20.85501 -20.45027 -19.23356 -18.30941 -17.33216 -17.08610 -16.78241 -16.50398 -15.95650 -15.44608 -15.08530 -14.98207 -14.68910 -14.32315 -14.05342 -13.82959 -13.78531 -13.58544 -13.51423 -13.05331 -12.97120 -12.69808 -12.41863 -12.27139 -12.13424 -11.90677 -11.57187 -11.33908 -11.27274 -11.23472 -10.91705 -10.86098 -10.80955 -10.23829 -10.14472 -9.98531 -9.85051 -9.72377 -9.27657 -8.84700 -8.74305 -8.40883 -8.13360 -6.95031 -5.79030 -3.14356 0.16833 0.60650 1.73537 2.40323 3.03801 3.24438 3.36745 3.42459 3.44849 3.89423 4.31562 4.38915 4.44188 4.53982 4.61000 4.70438 4.81122 4.92877 4.95951 5.04172 5.08722 5.19143 5.23620 5.35253 5.44595 5.51817 5.55363 5.59671 5.64010 5.72081 5.76477 5.85915 5.89742 5.93863 6.03298 6.09056 6.12745 6.22829 6.27917 6.45094 6.52831 6.57563 6.67911 6.86479 7.32902 7.44707 7.53799 7.71237 8.13514 8.20952 8.29805 9.11313 9.71306 10.34648 11.32393 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.002298 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.955069 B =12179.723799 C =12572.623983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.595 5.595 3 C 0.557 3.443 4 O -0.531 6.531 5 C -0.125 4.125 6 C -0.111 4.111 7 C -0.117 4.117 8 C -0.036 4.036 9 C -0.112 4.112 10 C -0.110 4.110 11 C -0.124 4.124 12 C -0.094 4.094 13 C -0.063 4.063 14 C -0.039 4.039 15 C 0.134 3.866 16 H 0.115 0.885 17 C 0.132 3.868 18 N -0.599 5.599 19 C -0.229 4.229 20 H 0.082 0.918 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.152 3.848 28 C 0.065 3.935 29 H 0.056 0.944 30 O -0.560 6.560 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.049 0.951 42 H 0.027 0.973 43 H 0.253 0.747 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 23.957 -1.211 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.327 5.327 3 C 0.345 3.655 4 O -0.408 6.408 5 C -0.128 4.128 6 C -0.128 4.128 7 C -0.135 4.135 8 C -0.036 4.036 9 C -0.130 4.130 10 C -0.128 4.128 11 C -0.142 4.142 12 C -0.112 4.112 13 C -0.063 4.063 14 C -0.058 4.058 15 C 0.030 3.970 16 H 0.133 0.867 17 C 0.004 3.996 18 N -0.327 5.327 19 C -0.357 4.357 20 H 0.099 0.901 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.746 3.254 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.026 3.974 28 C 0.004 3.996 29 H 0.073 0.927 30 O -0.364 6.364 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.171 0.829 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.594 24.153 -0.870 25.651 hybrid contribution -0.209 -1.302 0.090 1.322 sum -8.803 22.851 -0.780 24.500 Atomic orbital electron populations 1.22384 0.80336 1.03578 1.01468 1.47577 1.06635 1.05809 1.72632 1.18283 0.87056 0.83371 0.76753 1.90784 1.13880 1.86938 1.49179 1.19916 0.95639 0.93703 1.03524 1.21955 0.93406 1.00164 0.97296 1.20951 1.00425 0.91263 1.00851 1.18241 0.93588 0.94169 0.97636 1.21053 0.99847 0.91733 1.00383 1.20910 0.95531 0.98255 0.98124 1.20856 0.95065 0.98318 0.99989 1.21128 0.99878 0.91561 0.98661 1.18052 0.94258 0.93721 1.00318 1.21495 0.99070 0.90118 0.95120 1.22431 0.98477 0.81038 0.95020 0.86671 1.21825 0.97444 0.85523 0.94776 1.44314 1.83292 1.03221 1.01854 1.19112 1.41452 0.85715 0.89443 0.90059 1.24833 1.01630 0.97811 0.96098 1.69946 1.54781 1.23534 1.08667 0.85989 0.77497 0.82544 0.79382 1.20409 1.21699 1.21634 1.21859 1.01960 0.89150 0.84419 1.23558 0.92088 0.97276 0.86667 0.92659 1.86511 1.63280 1.61231 1.25395 0.91672 0.90015 0.90603 0.82933 0.85047 0.85436 0.85941 0.85858 0.85249 0.84228 0.93284 0.95543 0.93651 0.93419 0.92131 0.77982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 7.29 59.85 0.44 1.19 16 2 N -0.59 -9.51 2.91 -172.61 -0.50 -10.01 16 3 C 0.56 9.41 7.50 -12.36 -0.09 9.31 16 4 O -0.53 -10.99 15.91 5.31 0.08 -10.91 16 5 C -0.12 -1.67 5.54 -105.00 -0.58 -2.26 16 6 C -0.11 -1.17 7.51 -39.57 -0.30 -1.47 16 7 C -0.12 -1.08 9.73 -39.55 -0.38 -1.46 16 8 C -0.04 -0.36 5.75 -106.76 -0.61 -0.98 16 9 C -0.11 -0.90 9.76 -39.49 -0.39 -1.28 16 10 C -0.11 -0.80 9.95 -39.92 -0.40 -1.20 16 11 C -0.12 -0.95 9.95 -39.93 -0.40 -1.35 16 12 C -0.09 -0.86 9.77 -39.44 -0.39 -1.24 16 13 C -0.06 -0.70 5.74 -106.85 -0.61 -1.31 16 14 C -0.04 -0.49 9.33 -38.71 -0.36 -0.85 16 15 C 0.13 2.61 3.16 -65.78 -0.21 2.40 16 16 H 0.12 2.61 7.06 -51.93 -0.37 2.24 16 17 C 0.13 2.70 6.81 -2.35 -0.02 2.69 16 18 N -0.60 -15.11 3.41 -169.81 -0.58 -15.69 16 19 C -0.23 -6.30 10.29 -15.06 -0.15 -6.46 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -26.64 10.31 55.49 0.57 -26.07 16 23 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 C 0.15 3.63 5.14 -3.06 -0.02 3.61 16 28 C 0.06 1.26 3.90 -24.89 -0.10 1.16 16 29 H 0.06 0.97 6.38 -51.93 -0.33 0.64 16 30 O -0.56 -10.70 13.39 -35.23 -0.47 -11.17 16 31 H 0.07 0.63 6.73 -51.93 -0.35 0.28 16 32 H 0.08 0.80 5.44 -51.93 -0.28 0.52 16 33 H 0.08 0.89 6.40 -51.93 -0.33 0.56 16 34 H 0.15 1.37 3.97 -52.49 -0.21 1.16 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.14 1.75 7.76 -52.48 -0.41 1.35 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.50 6.96 -51.93 -0.36 0.14 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 45 H 0.06 1.64 7.28 -51.93 -0.38 1.26 16 46 H 0.37 5.56 9.11 45.56 0.42 5.97 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -34.63 368.57 -10.10 -44.73 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.08 Total: 6.50 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -4.66 Total: 0.20 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.51 Total: -51.77 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.39 Total: -22.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.63 -10.10 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047607513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.368 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds