Wall clock time and date at job start Tue Mar 31 2020 23:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 120.00259 * 2 1 4 4 O 1.21559 * 119.99748 * 186.69186 * 3 2 1 5 5 C 1.47766 * 119.99579 * 6.68737 * 3 2 1 6 6 C 1.40655 * 119.75182 * 21.13704 * 5 3 2 7 7 C 1.35719 * 120.84570 * 179.70891 * 6 5 3 8 8 C 1.40707 * 120.02438 * 0.55401 * 7 6 5 9 9 C 1.40480 * 121.04620 * 179.65466 * 8 7 6 10 10 C 1.36139 * 119.72330 * 180.02562 * 9 8 7 11 11 C 1.39364 * 121.00951 * 0.04384 * 10 9 8 12 12 C 1.36092 * 120.95196 * 0.02562 * 11 10 9 13 13 C 1.40650 * 119.66307 * 359.97438 * 12 11 10 14 14 C 1.38492 * 119.74738 * 201.40434 * 5 3 2 15 15 C 1.46502 * 120.00084 * 179.97438 * 2 1 3 16 16 H 1.09001 * 110.91792 * 183.89748 * 15 2 1 17 17 C 1.54914 * 111.00356 * 307.80503 * 15 2 1 18 18 N 1.47747 * 104.83833 * 155.16672 * 17 15 2 19 19 C 1.36942 * 125.82080 * 155.82987 * 18 17 15 20 20 H 1.08002 * 119.99944 * 359.93417 * 19 18 17 21 21 C 1.38807 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00225 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99734 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47259 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47031 * 120.00807 * 23 21 19 26 26 H 1.48504 * 109.47094 * 240.00466 * 23 21 19 27 27 C 1.47022 * 108.53385 * 335.74811 * 18 17 15 28 28 C 1.54332 * 107.39791 * 1.18431 * 27 18 17 29 29 H 1.08997 * 110.71770 * 263.75080 * 28 27 18 30 30 O 1.42899 * 110.71749 * 140.47871 * 28 27 18 31 31 H 1.09001 * 109.46898 * 268.39266 * 1 2 3 32 32 H 1.09003 * 109.47290 * 28.39190 * 1 2 3 33 33 H 1.09000 * 109.47216 * 148.39729 * 1 2 3 34 34 H 1.08001 * 119.57594 * 359.97350 * 6 5 3 35 35 H 1.08007 * 119.98629 * 180.28076 * 7 6 5 36 36 H 1.08002 * 120.14091 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.49727 * 180.02562 * 10 9 8 38 38 H 1.07993 * 119.52558 * 179.97438 * 11 10 9 39 39 H 1.08008 * 120.16873 * 180.02562 * 12 11 10 40 40 H 1.08003 * 120.27486 * 359.97438 * 14 5 3 41 41 H 1.08998 * 110.36813 * 273.91977 * 17 15 2 42 42 H 1.08996 * 110.36615 * 36.13240 * 17 15 2 43 43 H 0.97010 * 119.99843 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.88565 * 241.69234 * 27 18 17 45 45 H 1.08994 * 109.88380 * 120.67147 * 27 18 17 46 46 H 0.96695 * 114.00037 * 61.45458 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3483 1.1707 -0.1227 5 6 1.4076 2.4425 0.1490 6 6 0.1236 2.4478 0.7231 7 6 -0.5655 3.6070 0.8760 8 6 -0.0018 4.8230 0.4475 9 6 -0.6990 6.0343 0.5887 10 6 -0.1282 7.1951 0.1644 11 6 1.1410 7.2026 -0.4112 12 6 1.8462 6.0490 -0.5659 13 6 1.2890 4.8300 -0.1394 14 6 1.9895 3.6228 -0.2827 15 6 2.1975 -1.2687 0.0006 16 1 3.2718 -1.0978 0.0697 17 6 1.7074 -2.1923 1.1436 18 7 2.0290 -3.5607 0.6886 19 6 2.2212 -4.6496 1.4966 20 1 2.1418 -4.5471 2.5688 21 6 2.5189 -5.8847 0.9375 22 7 2.6170 -6.0093 -0.3691 23 14 2.7819 -7.3698 2.0397 24 1 2.6180 -6.9676 3.4597 25 1 1.7848 -8.4179 1.7042 26 1 4.1515 -7.9047 1.8312 27 6 2.1063 -3.5589 -0.7796 28 6 1.8483 -2.1130 -1.2535 29 1 0.8026 -1.9786 -1.5299 30 8 2.7083 -1.7775 -2.3443 31 1 -0.3633 -0.0288 1.0273 32 1 -0.3634 0.9041 -0.4887 33 1 -0.3634 -0.8753 -0.5385 34 1 -0.3179 1.5181 1.0503 35 1 -1.5488 3.5956 1.3227 36 1 -1.6838 6.0448 1.0322 37 1 -0.6673 8.1244 0.2751 38 1 1.5709 8.1372 -0.7399 39 1 2.8291 6.0695 -1.0132 40 1 2.9740 3.6140 -0.7265 41 1 2.2391 -1.9667 2.0680 42 1 0.6329 -2.0800 1.2878 43 1 2.8254 -6.8724 -0.7598 44 1 1.3482 -4.2249 -1.1916 45 1 3.0969 -3.8824 -1.0990 46 1 2.5830 -2.3297 -3.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047607513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:02 Heat of formation + Delta-G solvation = -1.772331 kcal Electronic energy + Delta-G solvation = -29048.950421 eV Core-core repulsion = 25097.387133 eV Total energy + Delta-G solvation = -3951.563288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.89652 -40.78792 -39.43825 -37.33359 -36.75478 -36.37461 -33.90325 -33.68196 -31.75414 -30.27310 -30.18075 -29.00904 -28.07708 -26.52081 -25.01606 -24.02993 -22.88639 -22.35596 -22.10590 -20.58530 -19.29304 -19.03558 -18.29757 -17.97073 -17.65193 -17.23960 -16.68228 -16.40599 -16.18477 -15.76892 -15.68284 -15.45139 -14.98351 -14.63803 -14.56814 -14.44590 -14.31084 -14.25098 -14.14362 -13.96015 -13.70494 -13.18016 -13.15045 -13.02636 -12.80010 -12.73022 -12.62209 -12.17552 -12.04214 -12.01052 -11.89146 -11.65880 -11.61631 -11.05291 -10.95737 -10.90276 -10.79600 -9.78523 -9.57598 -8.98692 -8.85236 -7.89338 -5.27259 -0.61177 -0.12040 0.98722 1.45750 1.47546 1.52169 1.57575 1.77632 2.25366 2.47122 3.09953 3.14314 3.31816 3.40783 3.56076 3.65257 3.80932 3.85740 3.99283 4.01723 4.04085 4.12585 4.19376 4.27705 4.33828 4.40105 4.43549 4.44725 4.51918 4.60334 4.78011 4.81449 4.84218 4.95399 5.00491 5.10010 5.17900 5.27625 5.31961 5.35750 5.41529 5.47637 5.58959 5.60619 5.63950 5.83345 6.04592 6.10724 6.29693 6.81142 7.01064 7.03089 7.67050 8.30317 9.20754 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.002298 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.955069 B =12179.723799 C =12572.623983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.592 5.592 3 C 0.551 3.449 4 O -0.585 6.585 5 C -0.141 4.141 6 C -0.120 4.120 7 C -0.102 4.102 8 C -0.051 4.051 9 C -0.114 4.114 10 C -0.109 4.109 11 C -0.119 4.119 12 C -0.117 4.117 13 C -0.080 4.080 14 C -0.053 4.053 15 C 0.145 3.855 16 H 0.075 0.925 17 C 0.135 3.865 18 N -0.621 5.621 19 C -0.242 4.242 20 H 0.088 0.912 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.288 1.288 26 H -0.296 1.296 27 C 0.164 3.836 28 C 0.082 3.918 29 H 0.087 0.913 30 O -0.573 6.573 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.248 0.752 44 H 0.026 0.974 45 H 0.017 0.983 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.924 26.578 0.015 29.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.322 5.322 3 C 0.342 3.658 4 O -0.466 6.466 5 C -0.144 4.144 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.051 4.051 9 C -0.132 4.132 10 C -0.127 4.127 11 C -0.136 4.136 12 C -0.135 4.135 13 C -0.080 4.080 14 C -0.073 4.073 15 C 0.039 3.961 16 H 0.093 0.907 17 C 0.009 3.991 18 N -0.349 5.349 19 C -0.371 4.371 20 H 0.106 0.894 21 C -0.258 4.258 22 N -0.599 5.599 23 Si 0.810 3.190 24 H -0.188 1.188 25 H -0.215 1.215 26 H -0.223 1.223 27 C 0.038 3.962 28 C 0.021 3.979 29 H 0.105 0.895 30 O -0.380 6.380 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.188 0.812 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.035 0.965 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -12.066 26.803 0.362 29.396 hybrid contribution 0.843 -1.901 -0.310 2.103 sum -11.222 24.902 0.052 27.314 Atomic orbital electron populations 1.22775 0.77186 1.04946 1.03648 1.47573 1.08388 1.04115 1.72106 1.18941 0.86671 0.84636 0.75542 1.90744 1.16356 1.87749 1.51772 1.19724 0.97064 0.91684 1.05886 1.22045 0.92214 1.01685 0.97748 1.21350 1.01362 0.90164 0.99074 1.18595 0.93286 0.95681 0.97539 1.21415 1.00884 0.90917 0.99958 1.21347 0.95243 0.99443 0.96671 1.21236 0.95187 0.98605 0.98604 1.21313 1.00700 0.91733 0.99707 1.18218 0.95122 0.93494 1.01170 1.21487 0.98830 0.91099 0.95848 1.21946 0.96827 0.82637 0.94659 0.90716 1.21936 0.98946 0.83444 0.94751 1.44584 1.83381 1.04587 1.02345 1.19506 1.40765 0.86635 0.90167 0.89421 1.25700 1.02031 1.00642 0.97477 1.70155 1.55861 1.23699 1.10234 0.84954 0.76707 0.78912 0.78393 1.18792 1.21501 1.22279 1.21584 0.98772 0.91639 0.84167 1.23376 0.93599 0.94107 0.86791 0.89523 1.86485 1.63684 1.61690 1.26126 0.88933 0.87681 0.90327 0.81224 0.81390 0.82497 0.82895 0.83452 0.84812 0.85938 0.93730 0.92349 0.94230 0.95556 0.96468 0.75904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 7.29 127.77 0.93 2.05 16 2 N -0.59 -18.70 2.91 -818.30 -2.38 -21.08 16 3 C 0.55 19.22 7.50 86.76 0.65 19.87 16 4 O -0.59 -25.99 15.91 -3.90 -0.06 -26.05 16 5 C -0.14 -3.78 5.54 -20.11 -0.11 -3.89 16 6 C -0.12 -2.24 7.51 22.28 0.17 -2.07 16 7 C -0.10 -1.51 9.73 22.29 0.22 -1.29 16 8 C -0.05 -0.88 5.75 -21.25 -0.12 -1.01 16 9 C -0.11 -1.35 9.76 22.33 0.22 -1.13 16 10 C -0.11 -1.15 9.95 22.05 0.22 -0.93 16 11 C -0.12 -1.49 9.95 22.04 0.22 -1.27 16 12 C -0.12 -2.03 9.77 22.36 0.22 -1.81 16 13 C -0.08 -1.71 5.74 -21.31 -0.12 -1.83 16 14 C -0.05 -1.40 9.33 22.83 0.21 -1.19 16 15 C 0.14 5.75 3.16 46.38 0.15 5.89 16 16 H 0.07 3.60 7.06 -2.39 -0.02 3.58 16 17 C 0.14 5.54 6.81 86.79 0.59 6.14 16 18 N -0.62 -31.96 3.41 -691.16 -2.35 -34.32 16 19 C -0.24 -13.49 10.29 84.03 0.86 -12.63 16 20 H 0.09 4.64 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 22 N -0.95 -56.82 10.31 21.65 0.22 -56.60 16 23 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 27 C 0.16 8.15 5.14 86.73 0.45 8.60 16 28 C 0.08 3.21 3.90 31.79 0.12 3.34 16 29 H 0.09 2.90 6.38 -2.39 -0.02 2.89 16 30 O -0.57 -22.45 13.39 -148.98 -1.99 -24.44 16 31 H 0.09 1.43 6.73 -2.39 -0.02 1.42 16 32 H 0.11 1.73 5.44 -2.39 -0.01 1.72 16 33 H 0.08 1.60 6.40 -2.39 -0.02 1.58 16 34 H 0.17 2.45 3.97 -2.91 -0.01 2.44 16 35 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 36 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.15 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.12 3.46 7.76 -2.91 -0.02 3.44 16 41 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 2.07 6.96 -2.39 -0.02 2.05 16 43 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 44 H 0.03 1.40 7.51 -2.39 -0.02 1.38 16 45 H 0.02 0.99 7.28 -2.39 -0.02 0.97 16 46 H 0.39 11.87 9.11 -74.06 -0.67 11.20 16 Total: -1.00 -80.33 368.57 1.15 -79.18 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.35 Total: 22.11 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 5.34 Total: 13.61 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.51 Total: -112.00 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.06 Total: -50.50 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -80.33 1.15 -79.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047607513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.405 kcal (2) G-P(sol) polarization free energy of solvation -80.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds