Wall clock time and date at job start Tue Mar 31 2020 23:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00200 * 2 1 4 4 H 1.48501 * 109.46866 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46941 * 299.99897 * 3 2 1 6 6 H 1.48500 * 109.46791 * 60.00246 * 3 2 1 7 7 C 1.38817 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99504 * 0.02562 * 7 2 1 10 10 C 1.46044 * 125.23958 * 359.32392 * 9 7 2 11 11 C 1.53931 * 107.07602 * 198.01461 * 10 9 7 12 12 H 1.09005 * 113.60364 * 209.70630 * 11 10 9 13 13 C 1.53967 * 109.25084 * 82.51420 * 11 10 9 14 14 N 1.46776 * 106.62681 * 221.80967 * 13 11 10 15 15 C 1.34774 * 125.33922 * 198.49320 * 14 13 11 16 16 O 1.21278 * 120.00190 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99856 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.46945 * 179.97438 * 17 15 14 19 19 C 1.39682 * 119.14052 * 269.73184 * 18 17 15 20 20 C 1.35638 * 121.81776 * 179.69962 * 19 18 17 21 21 C 1.41148 * 119.59400 * 0.56417 * 20 19 18 22 22 N 1.32061 * 134.68081 * 179.67413 * 21 20 19 23 23 N 1.39963 * 108.96039 * 180.02562 * 22 21 20 24 24 H 0.96997 * 125.01921 * 180.02562 * 23 22 21 25 25 C 1.33985 * 109.95680 * 0.02562 * 23 22 21 26 26 C 1.38250 * 107.90628 * 359.97438 * 25 23 22 27 27 C 1.35659 * 119.13463 * 90.00275 * 18 17 15 28 28 C 1.46666 * 109.32261 * 18.51868 * 14 13 11 29 29 C 1.53725 * 107.94547 * 359.45198 * 28 14 13 30 30 H 1.08999 * 112.56169 * 220.28763 * 29 28 14 31 31 C 1.46644 * 125.32504 * 179.97438 * 9 7 2 32 32 H 0.97009 * 119.99826 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.10347 * 78.99071 * 10 9 7 34 34 H 1.09002 * 110.55965 * 317.85317 * 10 9 7 35 35 H 1.09001 * 110.02494 * 341.10284 * 13 11 10 36 36 H 1.09002 * 110.03201 * 102.51875 * 13 11 10 37 37 H 1.08997 * 109.47229 * 300.00063 * 17 15 14 38 38 H 1.08999 * 109.47185 * 60.00527 * 17 15 14 39 39 H 1.08000 * 119.08616 * 0.02562 * 19 18 17 40 40 H 1.08003 * 120.20098 * 180.28829 * 20 19 18 41 41 H 1.07995 * 126.04448 * 180.02562 * 25 23 22 42 42 H 1.07996 * 120.22983 * 359.97144 * 27 18 17 43 43 H 1.09005 * 109.77152 * 239.83467 * 28 14 13 44 44 H 1.09002 * 109.77945 * 119.07579 * 28 14 13 45 45 H 1.08999 * 109.75787 * 59.52648 * 31 9 7 46 46 H 1.08995 * 109.76195 * 298.79774 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1288 -2.5213 0.0141 11 6 -0.4468 -3.9586 0.4641 12 1 -1.3764 -4.3499 0.0505 13 6 -0.3936 -4.0328 2.0011 14 7 0.2905 -5.2870 2.3376 15 6 0.2400 -5.9059 3.5337 16 8 -0.4113 -5.4265 4.4376 17 6 0.9927 -7.1938 3.7481 18 6 0.7728 -7.6752 5.1591 19 6 1.6535 -7.2650 6.1628 20 6 1.5032 -7.6604 7.4515 21 6 0.4379 -8.5194 7.7974 22 7 0.0230 -9.0790 8.9193 23 7 -1.1133 -9.8504 8.6497 24 1 -1.6077 -10.3624 9.3087 25 6 -1.4172 -9.7771 7.3468 26 6 -0.4860 -8.9559 6.7387 27 6 -0.2721 -8.5001 5.4203 28 6 1.0384 -5.7607 1.1682 29 6 0.8078 -4.7624 0.0222 30 1 0.6749 -5.2549 -0.9410 31 6 1.9376 -3.7206 0.0005 32 1 -0.4850 0.8401 0.0004 33 1 -0.5119 -2.3523 -0.9923 34 1 -0.5723 -1.8066 0.7074 35 1 0.1655 -3.1848 2.3966 36 1 -1.4041 -4.0375 2.4099 37 1 0.6323 -7.9464 3.0468 38 1 2.0568 -7.0243 3.5842 39 1 2.4736 -6.6109 5.9064 40 1 2.1970 -7.3237 8.2076 41 1 -2.2438 -10.2714 6.8583 42 1 -0.9359 -8.8053 4.6250 43 1 0.6789 -6.7473 0.8756 44 1 2.1011 -5.8107 1.4055 45 1 2.5641 -3.8383 0.8847 46 1 2.5404 -3.8493 -0.8984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048933101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:59 Heat of formation + Delta-G solvation = 93.800108 kcal Electronic energy + Delta-G solvation = -28739.085880 eV Core-core repulsion = 24823.959675 eV Total energy + Delta-G solvation = -3915.126204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.43448 -40.17164 -38.54500 -37.18975 -34.95672 -32.91061 -32.25853 -31.33643 -30.49674 -29.92316 -29.61637 -27.31407 -25.46172 -25.30940 -24.07078 -22.90431 -21.37196 -20.88019 -20.10022 -19.36912 -19.03079 -18.39656 -17.18446 -16.89039 -16.55516 -15.89729 -15.64669 -15.08463 -14.98151 -14.73355 -14.70341 -14.25471 -14.02255 -13.68051 -13.26563 -13.10107 -12.92312 -12.76589 -12.10205 -12.06691 -11.97790 -11.85684 -11.72418 -11.56588 -11.51548 -11.41863 -10.94475 -10.83443 -10.49959 -10.45601 -10.36608 -10.10587 -9.98633 -9.86639 -9.64868 -9.56520 -8.87826 -8.62795 -8.28833 -7.72017 -6.84627 -5.70345 -3.08801 0.45717 1.65931 2.26568 2.46489 2.87853 3.26652 3.39649 3.45275 3.47693 3.77382 4.06455 4.40853 4.47050 4.67773 4.73942 4.85454 4.87532 4.96377 5.13776 5.16020 5.27155 5.31543 5.44895 5.47169 5.49949 5.52995 5.56793 5.71588 5.78123 5.83270 5.92831 6.01334 6.20064 6.29551 6.31011 6.34627 6.41626 6.57341 6.57969 6.67166 6.74286 6.75822 6.81918 6.82498 7.37938 7.45858 7.62080 7.81737 7.82820 8.31301 8.43531 9.21949 9.81873 10.44113 11.36386 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.002217 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.573557 B =12624.489829 C =13071.846028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.172 3.828 11 C -0.122 4.122 12 H 0.086 0.914 13 C 0.120 3.880 14 N -0.612 5.612 15 C 0.524 3.476 16 O -0.536 6.536 17 C -0.094 4.094 18 C -0.094 4.094 19 C -0.054 4.054 20 C -0.109 4.109 21 C 0.108 3.892 22 N -0.312 5.312 23 N -0.429 5.429 24 H 0.442 0.558 25 C 0.080 3.920 26 C -0.201 4.201 27 C -0.031 4.031 28 C 0.111 3.889 29 C -0.110 4.110 30 H 0.094 0.906 31 C 0.144 3.856 32 H 0.252 0.748 33 H 0.019 0.981 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.187 0.813 42 H 0.122 0.878 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.023 0.977 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 -23.118 8.824 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.326 5.326 10 C 0.047 3.953 11 C -0.143 4.143 12 H 0.104 0.896 13 C -0.002 4.002 14 N -0.346 5.346 15 C 0.312 3.688 16 O -0.413 6.413 17 C -0.134 4.134 18 C -0.096 4.096 19 C -0.076 4.076 20 C -0.130 4.130 21 C -0.046 4.046 22 N -0.140 5.140 23 N -0.130 5.130 24 H 0.286 0.714 25 C -0.077 4.077 26 C -0.211 4.211 27 C -0.052 4.052 28 C -0.012 4.012 29 C -0.129 4.129 30 H 0.112 0.888 31 C 0.018 3.982 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.204 0.796 42 H 0.140 0.860 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.908 -22.791 10.685 25.243 hybrid contribution -0.051 0.672 -0.677 0.955 sum -1.959 -22.119 10.008 24.356 Atomic orbital electron populations 1.69883 1.04865 1.24873 1.57324 1.24800 0.95750 0.97770 1.02169 0.86014 0.78681 0.83633 0.77255 1.20520 1.21744 1.21711 1.19087 0.90539 0.82303 1.43465 0.90382 1.44053 1.01684 0.99940 1.86949 1.21241 0.84888 0.89422 0.99763 1.23278 0.96942 1.00259 0.93782 0.89583 1.22013 0.97151 0.85791 0.95231 1.48389 1.49612 1.25297 1.11322 1.20174 0.81925 0.85759 0.80952 1.90724 1.42633 1.66771 1.41182 1.20637 1.02074 0.95575 0.95074 1.18676 0.97114 0.99537 0.94313 1.20551 0.98149 0.96961 0.91978 1.19804 0.97121 0.99503 0.96550 1.20968 0.96321 0.97006 0.90315 1.77661 1.01277 1.14618 1.20476 1.46285 1.22406 1.36513 1.07762 0.71408 1.22670 0.99913 0.99819 0.85315 1.19573 0.99632 1.06193 0.95723 1.19995 0.95791 0.95886 0.93511 1.21910 0.96174 0.97290 0.85832 1.22746 0.97365 0.95655 0.97121 0.88774 1.21186 0.93345 0.85657 0.98038 0.93707 0.96316 0.88709 0.90481 0.91612 0.88295 0.88093 0.85559 0.85368 0.79590 0.86005 0.91938 0.91355 0.95895 0.95853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.17 55.49 0.56 -25.92 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.15 10.25 -15.06 -0.15 -6.31 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.74 3.36 -172.48 -0.58 -15.31 16 10 C 0.17 3.99 4.73 -3.80 -0.02 3.98 16 11 C -0.12 -2.16 4.17 -88.35 -0.37 -2.53 16 12 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 13 C 0.12 2.19 6.13 -3.39 -0.02 2.17 16 14 N -0.61 -9.46 3.31 -172.29 -0.57 -10.04 16 15 C 0.52 8.05 7.83 -10.98 -0.09 7.96 16 16 O -0.54 -10.48 16.32 5.56 0.09 -10.39 16 17 C -0.09 -1.00 4.95 -29.03 -0.14 -1.15 16 18 C -0.09 -1.12 4.33 -105.00 -0.45 -1.57 16 19 C -0.05 -0.64 9.51 -39.97 -0.38 -1.02 16 20 C -0.11 -1.33 10.08 -39.41 -0.40 -1.73 16 21 C 0.11 1.41 7.49 -83.05 -0.62 0.78 16 22 N -0.31 -3.87 12.70 33.25 0.42 -3.45 16 23 N -0.43 -3.47 7.18 30.84 0.22 -3.25 16 24 H 0.44 1.75 8.96 -182.70 -1.64 0.11 16 25 C 0.08 0.62 12.08 -16.61 -0.20 0.42 16 26 C -0.20 -2.29 6.33 -105.19 -0.67 -2.96 16 27 C -0.03 -0.35 9.66 -39.41 -0.38 -0.73 16 28 C 0.11 1.41 5.87 -3.57 -0.02 1.39 16 29 C -0.11 -1.68 3.98 -88.60 -0.35 -2.04 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 C 0.14 2.79 6.64 -3.60 -0.02 2.76 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 2.50 6.04 -51.93 -0.31 2.19 16 35 H 0.08 1.68 7.71 -51.93 -0.40 1.28 16 36 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.10 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.10 0.90 8.07 -51.93 -0.42 0.49 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.19 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.79 7.47 -51.93 -0.39 0.41 16 45 H 0.02 0.45 7.34 -51.93 -0.38 0.07 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -36.00 374.25 -11.35 -47.35 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.73 Total: -0.63 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -4.39 Total: -0.93 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.06 Total: -57.97 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.00 -11.35 -47.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048933101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.147 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds