Wall clock time and date at job start Tue Mar 31 2020 23:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48500 * 109.47299 * 240.00447 * 3 2 1 5 5 H 1.48498 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47197 * 119.99889 * 3 2 1 7 7 C 1.38810 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.47178 * 125.25842 * 359.13394 * 9 7 2 11 11 C 1.53682 * 107.73787 * 180.39875 * 10 9 7 12 12 H 1.08993 * 113.05742 * 254.94529 * 11 10 9 13 13 C 1.53723 * 109.34110 * 128.69250 * 11 10 9 14 14 N 1.46667 * 107.94468 * 266.25432 * 13 11 10 15 15 C 1.34783 * 125.33901 * 180.54135 * 14 13 11 16 16 O 1.21279 * 119.99952 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99731 * 179.97438 * 15 14 13 18 18 C 1.50707 * 109.46869 * 180.02562 * 17 15 14 19 19 C 1.39688 * 119.09033 * 270.25675 * 18 17 15 20 20 C 1.35652 * 121.72294 * 180.26510 * 19 18 17 21 21 C 1.41123 * 119.53770 * 359.74276 * 20 19 18 22 22 C 1.38249 * 134.81923 * 180.02562 * 21 20 19 23 23 N 1.33984 * 107.90736 * 179.97438 * 22 21 20 24 24 H 0.96998 * 125.01489 * 179.97438 * 23 22 21 25 25 N 1.39954 * 109.95929 * 0.02562 * 23 22 21 26 26 C 1.32059 * 108.95830 * 359.97438 * 25 23 22 27 27 C 1.35628 * 119.09048 * 89.99855 * 18 17 15 28 28 C 1.46772 * 109.32649 * 0.80859 * 14 13 11 29 29 C 1.54166 * 106.52316 * 341.08939 * 28 14 13 30 30 H 1.08998 * 113.23881 * 266.01747 * 29 28 14 31 31 C 1.46745 * 125.33100 * 179.97438 * 9 7 2 32 32 H 0.97004 * 119.99889 * 359.97438 * 1 2 3 33 33 H 1.09003 * 108.95144 * 61.37590 * 10 9 7 34 34 H 1.08999 * 110.83207 * 300.50296 * 10 9 7 35 35 H 1.09003 * 109.77945 * 146.63146 * 13 11 10 36 36 H 1.09008 * 109.77317 * 25.87447 * 13 11 10 37 37 H 1.08995 * 109.47095 * 60.00819 * 17 15 14 38 38 H 1.08993 * 109.47767 * 300.00108 * 17 15 14 39 39 H 1.08005 * 119.13366 * 0.03186 * 19 18 17 40 40 H 1.08000 * 120.23060 * 179.77183 * 20 19 18 41 41 H 1.08004 * 126.04301 * 0.02562 * 22 21 20 42 42 H 1.08002 * 120.20581 * 0.03070 * 27 18 17 43 43 H 1.08998 * 110.03251 * 100.50590 * 28 14 13 44 44 H 1.08998 * 110.03473 * 221.93049 * 28 14 13 45 45 H 1.09001 * 110.00948 * 42.34308 * 31 9 7 46 46 H 1.09005 * 110.01233 * 280.97148 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1398 -2.5229 0.0182 11 6 -0.4718 -4.0235 0.0216 12 1 -0.8300 -4.3836 -0.9428 13 6 -1.4534 -4.3251 1.1655 14 7 -0.6709 -4.7370 2.3356 15 6 -1.1834 -5.0926 3.5304 16 8 -2.3842 -5.0880 3.7007 17 6 -0.2644 -5.4970 4.6542 18 6 -1.0823 -5.8452 5.8713 19 6 -1.3978 -4.8395 6.7879 20 6 -2.1260 -5.0942 7.9037 21 6 -2.5854 -6.4056 8.1503 22 6 -3.3272 -7.0063 9.1504 23 7 -3.4541 -8.3049 8.8457 24 1 -3.9301 -8.9583 9.3817 25 7 -2.7974 -8.5792 7.6407 26 6 -2.2578 -7.4643 7.1826 27 6 -1.4960 -7.1253 6.0436 28 6 0.7581 -4.6950 2.0035 29 6 0.8513 -4.7080 0.4647 30 1 0.9784 -5.7079 0.0500 31 6 1.9381 -3.7215 0.0005 32 1 -0.4850 0.8401 0.0004 33 1 -0.5491 -2.0570 -0.8783 34 1 -0.5620 -2.0500 0.9048 35 1 -2.1273 -5.1297 0.8708 36 1 -2.0290 -3.4304 1.4031 37 1 0.4058 -4.6707 4.8907 38 1 0.3214 -6.3645 4.3503 39 1 -1.0498 -3.8335 6.6052 40 1 -2.3530 -4.2989 8.5982 41 1 -3.7333 -6.5154 10.0225 42 1 -1.2402 -7.8816 5.3163 43 1 1.2069 -3.7842 2.3997 44 1 1.2628 -5.5695 2.4143 45 1 2.7817 -3.7444 0.6904 46 1 2.2710 -3.9791 -1.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049195443.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:12 Heat of formation + Delta-G solvation = 70.123478 kcal Electronic energy + Delta-G solvation = -28844.959792 eV Core-core repulsion = 24928.806892 eV Total energy + Delta-G solvation = -3916.152900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.18788 -41.47231 -39.81848 -38.16639 -36.48638 -34.11507 -33.47477 -32.95354 -31.85248 -31.03528 -29.76849 -29.10583 -27.15456 -26.96630 -24.92049 -24.01566 -22.43172 -21.78458 -21.62919 -20.72853 -20.30118 -18.96158 -18.81669 -18.09843 -17.64688 -17.34015 -16.71352 -16.56883 -16.10752 -15.88693 -15.73411 -15.47438 -15.32495 -14.84676 -14.64475 -14.30414 -14.25589 -13.82968 -13.56317 -13.40176 -13.22389 -13.04389 -12.98125 -12.75073 -12.67013 -12.63180 -12.61434 -12.43281 -12.00152 -11.83978 -11.81527 -11.47649 -11.31253 -11.28514 -11.24716 -10.94019 -10.64833 -9.59947 -9.59023 -8.83590 -8.57108 -7.81495 -5.16191 -0.29928 0.81977 1.47631 1.49759 1.50377 1.56583 1.65008 1.89360 2.08830 2.52535 2.88890 3.30629 3.36500 3.39163 3.61339 3.68223 3.81173 3.91081 3.93481 4.08598 4.15152 4.33136 4.33568 4.36328 4.40232 4.56613 4.57666 4.61032 4.62914 4.70341 4.76703 4.81122 4.89260 4.98425 5.10471 5.15307 5.23008 5.31759 5.45370 5.46279 5.52293 5.56676 5.67071 5.72921 5.81057 5.95894 6.24245 6.31484 6.58105 6.62177 7.13921 7.17726 7.84037 8.45946 9.28456 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.002365 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.948429 B =11835.048022 C =12568.555956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.199 3.801 11 C -0.114 4.114 12 H 0.111 0.889 13 C 0.125 3.875 14 N -0.611 5.611 15 C 0.525 3.475 16 O -0.582 6.582 17 C -0.093 4.093 18 C -0.018 4.018 19 C -0.169 4.169 20 C -0.035 4.035 21 C -0.242 4.242 22 C 0.116 3.884 23 N -0.416 5.416 24 H 0.460 0.540 25 N -0.355 5.355 26 C 0.084 3.916 27 C -0.121 4.121 28 C 0.112 3.888 29 C -0.094 4.094 30 H 0.134 0.866 31 C 0.140 3.860 32 H 0.243 0.757 33 H 0.003 0.997 34 H 0.007 0.993 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.242 0.758 42 H 0.125 0.875 43 H 0.054 0.946 44 H 0.114 0.886 45 H 0.051 0.949 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -16.957 17.848 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.804 3.196 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.202 1.202 7 C -0.365 4.365 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.074 3.926 11 C -0.133 4.133 12 H 0.129 0.871 13 C 0.002 3.998 14 N -0.344 5.344 15 C 0.316 3.684 16 O -0.462 6.462 17 C -0.132 4.132 18 C -0.023 4.023 19 C -0.188 4.188 20 C -0.055 4.055 21 C -0.252 4.252 22 C -0.043 4.043 23 N -0.117 5.117 24 H 0.307 0.693 25 N -0.185 5.185 26 C -0.068 4.068 27 C -0.142 4.142 28 C -0.010 4.010 29 C -0.113 4.113 30 H 0.152 0.848 31 C 0.015 3.985 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.172 0.828 41 H 0.258 0.742 42 H 0.143 0.857 43 H 0.073 0.927 44 H 0.132 0.868 45 H 0.069 0.931 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.893 -18.093 17.774 25.527 hybrid contribution -0.164 2.017 -0.089 2.026 sum -3.057 -16.076 17.685 24.095 Atomic orbital electron populations 1.70202 1.06360 1.25056 1.58645 1.25638 0.96493 1.01082 1.03015 0.85194 0.77079 0.79021 0.78310 1.20221 1.22701 1.20164 1.19422 0.91093 0.83610 1.42340 0.89516 1.44648 1.02036 1.01410 1.86971 1.20829 0.84094 0.90200 0.97462 1.22987 0.95556 0.96591 0.98188 0.87122 1.21631 0.94124 0.98775 0.85260 1.48378 1.08830 1.65759 1.11392 1.20757 0.88839 0.76379 0.82471 1.90691 1.17659 1.55572 1.82315 1.20784 0.96990 1.05723 0.89742 1.18948 0.96127 0.92788 0.94464 1.20625 1.03214 0.99118 0.95856 1.20515 0.94126 0.94110 0.96721 1.20084 1.10291 0.96146 0.98665 1.23497 0.96411 0.84657 0.99687 1.46359 1.38872 1.09083 1.17421 0.69261 1.77581 1.20291 1.21123 0.99500 1.21111 0.97606 0.91561 0.96551 1.19722 1.01454 0.96777 0.96285 1.22199 0.80426 1.02755 0.95589 1.23003 0.93963 1.00026 0.94327 0.84831 1.21385 0.94925 0.83820 0.98409 0.94731 0.97853 0.97448 0.90906 0.94407 0.86005 0.84914 0.85579 0.82801 0.74175 0.85694 0.92735 0.86847 0.93077 0.95234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.88 10.25 21.65 0.22 -57.66 16 2 C -0.07 -3.94 5.48 84.86 0.47 -3.47 16 3 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -12.77 10.25 84.03 0.86 -11.91 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -30.42 3.39 -696.49 -2.36 -32.79 16 10 C 0.20 9.65 4.77 86.48 0.41 10.06 16 11 C -0.11 -3.95 4.01 -9.49 -0.04 -3.99 16 12 H 0.11 3.41 8.14 -2.39 -0.02 3.40 16 13 C 0.13 4.39 6.23 86.59 0.54 4.93 16 14 N -0.61 -19.39 3.31 -816.99 -2.71 -22.09 16 15 C 0.53 16.98 7.83 87.66 0.69 17.67 16 16 O -0.58 -23.84 16.34 -3.03 -0.05 -23.89 16 17 C -0.09 -2.16 4.80 29.11 0.14 -2.02 16 18 C -0.02 -0.48 4.33 -20.12 -0.09 -0.57 16 19 C -0.17 -4.15 9.52 22.02 0.21 -3.94 16 20 C -0.03 -0.72 10.09 22.38 0.23 -0.49 16 21 C -0.24 -5.20 6.33 -20.23 -0.13 -5.33 16 22 C 0.12 1.40 12.08 84.37 1.02 2.42 16 23 N -0.42 -5.93 7.18 -56.34 -0.40 -6.33 16 24 H 0.46 2.54 8.96 -213.42 -1.91 0.63 16 25 N -0.36 -9.03 12.70 -48.70 -0.62 -9.65 16 26 C 0.08 2.30 7.49 42.16 0.32 2.62 16 27 C -0.12 -3.34 9.65 22.38 0.22 -3.12 16 28 C 0.11 3.03 5.88 86.72 0.51 3.54 16 29 C -0.09 -2.65 4.14 -9.25 -0.04 -2.69 16 30 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 31 C 0.14 4.98 6.41 86.65 0.56 5.53 16 32 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.00 0.18 7.40 -2.39 -0.02 0.16 16 34 H 0.01 0.41 6.58 -2.39 -0.02 0.40 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.04 1.57 7.44 -2.38 -0.02 1.55 16 37 H 0.12 2.44 8.07 -2.39 -0.02 2.42 16 38 H 0.13 2.23 7.79 -2.39 -0.02 2.21 16 39 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.24 0.05 8.06 -2.91 -0.02 0.02 16 42 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.05 1.77 7.76 -2.39 -0.02 1.75 16 44 H 0.11 2.04 7.61 -2.39 -0.02 2.03 16 45 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 46 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -85.02 373.86 1.07 -83.94 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -0.90 Total: 11.63 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.86 Total: 9.24 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -5.87 Total: -128.52 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -85.02 1.07 -83.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049195443.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.067 kcal (2) G-P(sol) polarization free energy of solvation -85.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds