Wall clock time and date at job start Tue Mar 31 2020 23:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99675 * 2 1 4 4 H 1.48502 * 109.47011 * 274.97214 * 3 2 1 5 5 H 1.48496 * 109.47356 * 34.97595 * 3 2 1 6 6 H 1.48500 * 109.46936 * 154.97572 * 3 2 1 7 7 C 1.38814 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99617 * 170.43371 * 7 2 1 9 9 N 1.36936 * 119.99982 * 350.44176 * 7 2 1 10 10 C 1.47523 * 126.54753 * 3.44868 * 9 7 2 11 11 C 1.55473 * 107.03738 * 185.45073 * 10 9 7 12 12 C 1.53429 * 101.67569 * 22.18310 * 11 10 9 13 13 H 1.09004 * 111.75196 * 78.23062 * 12 11 10 14 14 C 1.45028 * 126.55916 * 182.80949 * 9 7 2 15 15 H 1.09001 * 108.25686 * 263.89037 * 14 9 7 16 16 C 1.51090 * 119.18723 * 28.76390 * 14 9 7 17 17 C 1.53870 * 107.33714 * 183.88987 * 16 14 9 18 18 C 1.52721 * 111.52588 * 303.07186 * 17 16 14 19 19 N 1.45723 * 116.38027 * 207.27502 * 12 11 10 20 20 C 1.34774 * 122.22815 * 350.13233 * 19 12 11 21 21 O 1.21649 * 119.99953 * 8.72965 * 20 19 12 22 22 C 1.47279 * 120.00259 * 188.72611 * 20 19 12 23 23 C 1.38437 * 120.03272 * 188.13000 * 22 20 19 24 24 C 1.40650 * 118.27026 * 180.02562 * 23 22 20 25 25 C 1.38265 * 133.40205 * 179.97438 * 24 23 22 26 26 C 1.39679 * 106.99661 * 179.74866 * 25 24 23 27 27 C 1.35645 * 108.08201 * 0.41547 * 26 25 24 28 28 N 1.35917 * 109.05851 * 359.57763 * 27 26 25 29 29 C 1.36908 * 132.41870 * 180.26011 * 28 27 26 30 30 N 1.29794 * 121.47424 * 180.02562 * 29 28 27 31 31 H 0.96994 * 120.00184 * 0.02562 * 1 2 3 32 32 H 1.08993 * 110.27503 * 65.85841 * 10 9 7 33 33 H 1.09001 * 109.58192 * 304.65532 * 10 9 7 34 34 H 1.08995 * 110.98602 * 264.08438 * 11 10 9 35 35 H 1.09008 * 111.01706 * 140.29298 * 11 10 9 36 36 H 1.08993 * 109.88178 * 64.43305 * 16 14 9 37 37 H 1.08997 * 109.94352 * 303.38564 * 16 14 9 38 38 H 1.08997 * 109.06439 * 182.54940 * 17 16 14 39 39 H 1.08995 * 109.01489 * 63.57040 * 17 16 14 40 40 H 1.09000 * 109.16272 * 288.12718 * 18 17 16 41 41 H 1.09004 * 109.11231 * 168.91030 * 18 17 16 42 42 H 1.08002 * 120.86263 * 0.04548 * 23 22 20 43 43 H 1.07997 * 126.49371 * 0.02562 * 25 24 23 44 44 H 1.08000 * 125.95306 * 180.30160 * 26 25 24 45 45 H 1.07997 * 125.46920 * 179.84842 * 27 26 25 46 46 H 1.07997 * 119.26333 * 0.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5042 2.6201 0.8025 6 1 3.5963 1.4122 0.5922 7 6 2.0103 -1.2022 0.0005 8 1 3.0791 -1.2086 -0.1549 9 7 1.3399 -2.3797 0.1980 10 6 -0.1178 -2.5455 0.3523 11 6 -0.3729 -4.0414 0.6905 12 6 0.9894 -4.4695 1.2518 13 1 1.1257 -4.1351 2.2802 14 6 1.9259 -3.7037 0.2825 15 1 1.8592 -4.1700 -0.7005 16 6 3.3392 -3.8526 0.7956 17 6 3.7153 -5.3400 0.6782 18 6 2.7329 -6.2281 1.4389 19 7 1.3349 -5.8780 1.1088 20 6 0.4411 -6.7991 0.6977 21 8 -0.6464 -6.4479 0.2809 22 6 0.7811 -8.2311 0.7529 23 6 -0.0626 -9.1662 0.1783 24 6 0.2978 -10.5237 0.2532 25 6 -0.2925 -11.6897 -0.1981 26 6 0.5465 -12.7426 0.1738 27 6 1.6073 -12.2208 0.8390 28 7 1.4753 -10.8692 0.8944 29 6 2.2580 -9.8864 1.4382 30 7 1.9213 -8.6349 1.3671 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6281 -2.2812 -0.5738 33 1 -0.4731 -1.9141 1.1667 34 1 -0.6207 -4.6078 -0.2072 35 1 -1.1549 -4.1443 1.4429 36 1 3.3901 -3.5385 1.8380 37 1 4.0188 -3.2497 0.1934 38 1 4.7161 -5.4872 1.0839 39 1 3.7122 -5.6251 -0.3738 40 1 2.8905 -6.1003 2.5099 41 1 2.9134 -7.2696 1.1726 42 1 -0.9737 -8.8612 -0.3150 43 1 -1.2234 -11.7704 -0.7397 44 1 0.3789 -13.7897 -0.0309 45 1 2.4275 -12.7879 1.2538 46 1 3.1761 -10.1584 1.9375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049548931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:26 Heat of formation + Delta-G solvation = 114.068273 kcal Electronic energy + Delta-G solvation = -29909.233748 eV Core-core repulsion = 25994.986437 eV Total energy + Delta-G solvation = -3914.247311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.71992 -40.35617 -38.28279 -37.32996 -35.33098 -33.44498 -32.56603 -32.16206 -31.27655 -29.29754 -28.37314 -28.08579 -25.23235 -24.50911 -24.34754 -23.01532 -21.62054 -21.36141 -20.82370 -19.87229 -19.35787 -18.40080 -17.16544 -16.54472 -16.30597 -16.12941 -15.76329 -15.19820 -15.01672 -14.68798 -14.56439 -14.45559 -14.12369 -13.74572 -13.38426 -13.15595 -12.92979 -12.79612 -12.72018 -12.55014 -12.41299 -12.14434 -11.82173 -11.51569 -11.20321 -10.90710 -10.85960 -10.79439 -10.63084 -10.38741 -10.10047 -9.98843 -9.79167 -9.65827 -9.59687 -9.29044 -8.97929 -8.48543 -8.19013 -7.81043 -6.77652 -5.67740 -2.98824 0.15714 0.81614 2.18152 2.48783 2.64239 3.12037 3.42966 3.48295 3.50472 3.52551 3.66748 4.19946 4.27750 4.44629 4.54456 4.81933 4.87462 5.05441 5.09420 5.22691 5.31619 5.37249 5.44573 5.51935 5.60232 5.69680 5.73175 5.78186 5.84698 5.94277 6.10864 6.13327 6.19158 6.22506 6.33835 6.37337 6.41792 6.50916 6.62989 6.75399 6.80110 6.84288 6.97029 7.26040 7.28963 7.63957 7.71245 7.76356 7.89048 8.30279 8.38880 9.24762 9.88533 10.57305 11.45296 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029290 B = 0.002655 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.739808 B =10542.641252 C =11261.642073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.137 4.137 12 C 0.115 3.885 13 H 0.081 0.919 14 C 0.159 3.841 15 H 0.016 0.984 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.088 3.912 19 N -0.579 5.579 20 C 0.577 3.423 21 O -0.528 6.528 22 C 0.016 3.984 23 C -0.041 4.041 24 C 0.029 3.971 25 C -0.173 4.173 26 C -0.146 4.146 27 C -0.031 4.031 28 N -0.388 5.388 29 C 0.300 3.700 30 N -0.456 5.456 31 H 0.252 0.748 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.129 0.871 42 H 0.164 0.836 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.176 0.824 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.521 -26.971 3.810 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.049 3.951 11 C -0.175 4.175 12 C 0.011 3.989 13 H 0.099 0.901 14 C 0.050 3.950 15 H 0.033 0.967 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.034 4.034 19 N -0.309 5.309 20 C 0.364 3.636 21 O -0.405 6.405 22 C -0.102 4.102 23 C -0.063 4.063 24 C -0.076 4.076 25 C -0.198 4.198 26 C -0.169 4.169 27 C -0.162 4.162 28 N -0.060 5.060 29 C 0.019 3.981 30 N -0.169 5.169 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.146 0.854 42 H 0.182 0.818 43 H 0.169 0.831 44 H 0.169 0.831 45 H 0.193 0.807 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.451 -25.574 4.003 26.453 hybrid contribution 0.158 0.361 -0.242 0.462 sum 5.610 -25.213 3.761 26.102 Atomic orbital electron populations 1.69985 1.04926 1.25052 1.56428 1.24809 0.95613 0.97596 1.02299 0.86181 0.78757 0.83905 0.77439 1.21754 1.21658 1.20670 1.18972 0.91521 0.82554 1.42402 0.90372 1.43889 1.02424 1.00710 1.84623 1.21558 0.84050 0.89227 1.00289 1.23091 0.93941 0.98659 1.01815 1.22370 0.98966 0.78033 0.99562 0.90089 1.20670 0.91593 0.87671 0.95083 0.96652 1.21433 0.98008 0.94378 1.01589 1.21951 0.98394 0.95861 1.00665 1.22591 0.79317 1.02327 0.99210 1.47759 1.10899 1.07907 1.64351 1.17383 0.84328 0.83437 0.78460 1.90815 1.23318 1.79888 1.46522 1.21075 0.92310 0.95276 1.01493 1.21687 1.00129 0.88645 0.95833 1.18916 0.89711 0.94650 1.04339 1.21184 1.02122 0.89669 1.06860 1.21064 0.94666 0.99670 1.01497 1.21981 1.04006 0.80367 1.09806 1.43168 1.17573 1.07722 1.37558 1.25028 0.96195 0.82395 0.94522 1.68356 1.16881 1.13010 1.18702 0.93753 0.94098 0.93143 0.89142 0.92327 0.91846 0.91686 0.91128 0.92340 0.92149 0.85430 0.81819 0.83054 0.83079 0.80685 0.77609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.66 10.54 55.49 0.59 -27.07 16 2 C -0.01 -0.19 5.47 -17.43 -0.10 -0.29 16 3 Si 0.91 22.40 29.56 -169.99 -5.03 17.38 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.38 9.91 -15.06 -0.15 -6.53 16 8 H 0.08 2.12 7.36 -52.48 -0.39 1.73 16 9 N -0.59 -15.61 3.33 -164.27 -0.55 -16.16 16 10 C 0.17 4.51 5.44 -2.17 -0.01 4.50 16 11 C -0.14 -3.01 5.18 -25.19 -0.13 -3.14 16 12 C 0.11 2.30 3.32 -67.06 -0.22 2.08 16 13 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.16 3.47 2.55 -68.62 -0.17 3.30 16 15 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 16 C -0.12 -2.09 5.46 -27.24 -0.15 -2.24 16 17 C -0.13 -1.82 5.93 -26.42 -0.16 -1.98 16 18 C 0.09 1.20 5.84 -3.44 -0.02 1.18 16 19 N -0.58 -9.88 2.92 -165.59 -0.48 -10.36 16 20 C 0.58 9.91 7.65 -12.59 -0.10 9.81 16 21 O -0.53 -10.45 13.07 5.23 0.07 -10.38 16 22 C 0.02 0.21 6.62 -82.43 -0.55 -0.33 16 23 C -0.04 -0.50 9.72 -38.60 -0.38 -0.87 16 24 C 0.03 0.30 6.78 -83.95 -0.57 -0.27 16 25 C -0.17 -1.48 10.98 -39.03 -0.43 -1.91 16 26 C -0.15 -0.98 10.80 -39.97 -0.43 -1.41 16 27 C -0.03 -0.19 11.61 -16.67 -0.19 -0.38 16 28 N -0.39 -3.30 2.95 -62.17 -0.18 -3.48 16 29 C 0.30 2.33 12.16 -89.23 -1.09 1.25 16 30 N -0.46 -5.03 6.29 -10.42 -0.07 -5.09 16 31 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.04 1.17 7.76 -51.93 -0.40 0.76 16 33 H 0.05 1.42 7.27 -51.93 -0.38 1.04 16 34 H 0.09 2.08 5.93 -51.93 -0.31 1.77 16 35 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.06 1.15 8.12 -51.93 -0.42 0.72 16 37 H 0.06 1.22 7.71 -51.93 -0.40 0.82 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.13 1.55 4.25 -70.73 -0.30 1.25 16 42 H 0.16 1.93 7.68 -52.49 -0.40 1.53 16 43 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.21 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -34.65 360.78 -11.41 -46.06 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.36 Total: 0.92 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -4.83 Total: 2.76 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.69 Total: -62.17 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.65 -11.41 -46.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049548931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.124 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds