Wall clock time and date at job start Tue Mar 31 2020 23:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47172 * 300.00008 * 3 2 1 6 6 H 1.48507 * 109.46863 * 59.99862 * 3 2 1 7 7 C 1.38808 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00058 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.46881 * 125.58270 * 359.96860 * 9 7 2 11 11 C 1.54061 * 107.70740 * 177.04753 * 10 9 7 12 12 C 1.54565 * 103.66995 * 342.84864 * 11 10 9 13 13 H 1.08994 * 108.79250 * 273.79132 * 12 11 10 14 14 C 1.47659 * 125.58162 * 179.97438 * 9 7 2 15 15 H 1.09001 * 110.56789 * 322.56876 * 14 9 7 16 16 C 1.52923 * 107.99243 * 83.58643 * 14 9 7 17 17 C 1.52936 * 109.79269 * 171.84390 * 16 14 9 18 18 C 1.53054 * 108.49498 * 294.00923 * 17 16 14 19 19 N 1.44189 * 111.47794 * 153.28238 * 12 11 10 20 20 C 1.34773 * 117.76154 * 93.66246 * 19 12 11 21 21 O 1.21647 * 119.99889 * 5.62740 * 20 19 12 22 22 C 1.47172 * 120.00378 * 185.62883 * 20 19 12 23 23 C 1.38584 * 120.72332 * 53.47598 * 22 20 19 24 24 C 1.38932 * 121.36212 * 180.02562 * 23 22 20 25 25 C 1.35822 * 122.59322 * 0.04883 * 24 23 22 26 26 C 1.40834 * 120.56293 * 0.22771 * 25 24 23 27 27 C 1.38425 * 134.90227 * 180.45204 * 26 25 24 28 28 N 1.33887 * 107.84825 * 179.50704 * 27 26 25 29 29 H 0.97001 * 125.01978 * 179.71337 * 28 27 26 30 30 N 1.39976 * 109.96114 * 359.75274 * 28 27 26 31 31 C 1.31480 * 109.01696 * 359.97438 * 30 28 27 32 32 H 0.97003 * 120.00350 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.81202 * 296.59975 * 10 9 7 34 34 H 1.09001 * 109.81314 * 57.43948 * 10 9 7 35 35 H 1.09005 * 110.56710 * 101.43033 * 11 10 9 36 36 H 1.09000 * 110.57430 * 224.15528 * 11 10 9 37 37 H 1.09008 * 109.41827 * 51.74341 * 16 14 9 38 38 H 1.09005 * 109.42102 * 291.94171 * 16 14 9 39 39 H 1.09000 * 109.63158 * 174.31208 * 17 16 14 40 40 H 1.08999 * 109.80060 * 53.80784 * 17 16 14 41 41 H 1.09008 * 109.45614 * 293.77792 * 18 17 16 42 42 H 1.08997 * 109.44572 * 173.81878 * 18 17 16 43 43 H 1.08000 * 119.32337 * 0.03240 * 23 22 20 44 44 H 1.07998 * 118.70054 * 180.02562 * 24 23 22 45 45 H 1.08005 * 119.71816 * 179.97438 * 25 24 23 46 46 H 1.08007 * 126.07221 * 359.29005 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1362 -2.5309 0.0007 11 6 -0.4600 -4.0352 -0.0750 12 6 0.8640 -4.6700 -0.5578 13 1 0.8919 -4.6383 -1.6470 14 6 1.9360 -3.7325 0.0005 15 1 2.8323 -3.7462 -0.6197 16 6 2.2793 -4.0955 1.4459 17 6 2.7261 -5.5562 1.5209 18 6 1.5335 -6.4475 1.1663 19 7 0.9842 -6.0384 -0.1194 20 6 0.5652 -7.0057 -0.9591 21 8 0.2004 -6.7190 -2.0836 22 6 0.5491 -8.4090 -0.5157 23 6 -0.1044 -8.7757 0.6500 24 6 -0.1276 -10.0962 1.0812 25 6 0.4814 -11.0997 0.3980 26 6 1.1781 -10.8329 -0.7965 27 6 1.8791 -11.6000 -1.7110 28 7 2.3247 -10.7843 -2.6747 29 1 2.8508 -11.0629 -3.4406 30 7 1.9199 -9.4701 -2.4134 31 6 1.2249 -9.4497 -1.2975 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5485 -2.1099 0.9176 34 1 -0.5577 -2.0175 -0.8636 35 1 -0.7331 -4.4181 0.9084 36 1 -1.2599 -4.2193 -0.7922 37 1 1.3998 -3.9528 2.0740 38 1 3.0845 -3.4516 1.7998 39 1 3.0657 -5.7838 2.5313 40 1 3.5370 -5.7310 0.8138 41 1 0.7671 -6.3516 1.9354 42 1 1.8611 -7.4855 1.1075 43 1 -0.6062 -8.0194 1.2354 44 1 -0.6501 -10.3340 1.9960 45 1 0.4343 -12.1103 0.7761 46 1 2.0411 -12.6663 -1.6550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049633523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:01 Heat of formation + Delta-G solvation = 100.630535 kcal Electronic energy + Delta-G solvation = -29987.999927 eV Core-core repulsion = 26073.169912 eV Total energy + Delta-G solvation = -3914.830015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.51330 -40.28993 -37.94006 -36.93225 -35.25130 -32.56463 -32.48328 -31.99140 -30.98294 -29.38907 -28.73047 -28.15152 -25.27505 -24.34486 -24.14960 -22.26348 -22.04759 -21.71674 -20.12315 -19.63923 -18.44866 -17.97860 -17.48990 -16.83038 -16.67109 -15.97887 -15.27656 -15.14135 -14.97066 -14.71665 -14.29350 -14.10907 -13.87860 -13.65882 -13.47505 -13.28928 -12.92027 -12.45824 -12.32441 -12.13282 -11.93257 -11.87181 -11.77658 -11.33702 -10.98965 -10.88307 -10.76037 -10.70868 -10.59823 -10.55423 -10.36480 -10.01997 -9.97898 -9.59633 -9.50090 -9.43593 -9.05905 -8.55135 -8.19370 -7.84147 -6.80439 -5.66239 -3.00591 0.18712 1.57349 2.04263 2.37484 2.90492 3.24461 3.43237 3.48697 3.51111 3.62582 3.97291 4.22200 4.52835 4.62002 4.75795 4.93358 5.01973 5.09286 5.11869 5.23170 5.36140 5.39054 5.50028 5.55280 5.61374 5.66699 5.76257 5.81603 5.98270 6.07888 6.10712 6.11240 6.18109 6.28343 6.32033 6.39109 6.46387 6.55649 6.65118 6.67673 6.75374 6.84067 7.07522 7.19523 7.33569 7.62871 7.64572 7.72228 7.89265 8.30253 8.47094 9.26316 9.86093 10.51513 11.44679 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.002776 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.149302 B =10082.847848 C =10252.085224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.179 3.821 11 C -0.151 4.151 12 C 0.136 3.864 13 H 0.093 0.907 14 C 0.162 3.838 15 H 0.054 0.946 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.109 3.891 19 N -0.581 5.581 20 C 0.555 3.445 21 O -0.526 6.526 22 C -0.102 4.102 23 C -0.039 4.039 24 C -0.161 4.161 25 C -0.024 4.024 26 C -0.215 4.215 27 C 0.088 3.912 28 N -0.428 5.428 29 H 0.445 0.555 30 N -0.283 5.283 31 C 0.133 3.867 32 H 0.251 0.749 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -27.604 3.402 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.190 4.190 12 C 0.032 3.968 13 H 0.111 0.889 14 C 0.053 3.947 15 H 0.072 0.928 16 C -0.170 4.170 17 C -0.170 4.170 18 C -0.014 4.014 19 N -0.313 5.313 20 C 0.342 3.658 21 O -0.402 6.402 22 C -0.108 4.108 23 C -0.062 4.062 24 C -0.181 4.181 25 C -0.044 4.044 26 C -0.225 4.225 27 C -0.070 4.070 28 N -0.128 5.128 29 H 0.289 0.711 30 N -0.109 5.109 31 C -0.025 4.025 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.086 -26.389 1.796 26.630 hybrid contribution 0.378 0.172 0.333 0.533 sum 3.464 -26.217 2.130 26.530 Atomic orbital electron populations 1.69986 1.04844 1.24859 1.57066 1.24798 0.95704 0.97602 1.02292 0.86052 0.78698 0.83863 0.77182 1.20542 1.21795 1.21830 1.19064 0.90438 0.82151 1.43619 0.90390 1.44519 1.01544 0.99262 1.86693 1.21052 0.84263 0.88013 1.01222 1.23096 0.96523 0.99395 0.99994 1.21141 0.96559 0.78879 1.00250 0.88878 1.20825 0.94009 0.86097 0.93733 0.92831 1.22112 1.01454 0.93418 0.99999 1.21841 0.97119 0.96774 1.01293 1.21578 0.96132 0.98843 0.84856 1.46969 1.61075 1.06126 1.17097 1.18141 0.78077 0.84668 0.84871 1.90811 1.47309 1.82996 1.19130 1.19797 1.03902 0.91366 0.95778 1.21217 0.95135 0.97049 0.92749 1.20336 1.03766 0.92244 1.01710 1.20232 0.93507 0.99173 0.91513 1.19572 1.09793 0.92580 1.00578 1.22752 0.97214 0.97345 0.89649 1.46462 1.39743 1.05972 1.20595 0.71087 1.77743 1.20989 0.94557 1.17625 1.21528 0.95885 0.92948 0.92122 0.93827 0.94174 0.92982 0.92557 0.91977 0.91915 0.91920 0.91154 0.91832 0.91920 0.90251 0.84678 0.85393 0.85664 0.79298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.35 10.29 55.49 0.57 -26.78 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -6.27 10.27 -15.06 -0.15 -6.43 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -15.32 2.94 -163.90 -0.48 -15.80 16 10 C 0.18 4.50 5.39 -3.28 -0.02 4.48 16 11 C -0.15 -3.10 6.46 -25.36 -0.16 -3.26 16 12 C 0.14 2.74 2.80 -68.35 -0.19 2.54 16 13 H 0.09 2.12 7.00 -51.93 -0.36 1.75 16 14 C 0.16 3.44 3.27 -67.35 -0.22 3.22 16 15 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 16 C -0.13 -2.34 5.31 -26.80 -0.14 -2.48 16 17 C -0.13 -1.83 6.10 -26.74 -0.16 -1.99 16 18 C 0.11 1.45 5.00 -4.46 -0.02 1.43 16 19 N -0.58 -9.84 2.79 -168.82 -0.47 -10.31 16 20 C 0.56 9.97 7.11 -12.63 -0.09 9.88 16 21 O -0.53 -11.61 16.34 5.24 0.09 -11.52 16 22 C -0.10 -1.48 4.53 -102.74 -0.47 -1.94 16 23 C -0.04 -0.42 7.89 -39.20 -0.31 -0.73 16 24 C -0.16 -1.33 9.83 -40.19 -0.39 -1.73 16 25 C -0.02 -0.19 10.02 -39.47 -0.40 -0.58 16 26 C -0.22 -2.13 6.34 -105.21 -0.67 -2.80 16 27 C 0.09 0.58 12.08 -16.59 -0.20 0.38 16 28 N -0.43 -3.64 7.18 30.86 0.22 -3.42 16 29 H 0.44 2.03 8.96 -182.69 -1.64 0.40 16 30 N -0.28 -4.12 12.67 34.35 0.44 -3.68 16 31 C 0.13 1.88 7.49 -80.98 -0.61 1.28 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 34 H 0.05 1.46 7.25 -51.93 -0.38 1.09 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.19 8.02 -51.92 -0.42 0.77 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.75 7.86 -51.92 -0.41 0.34 16 42 H 0.08 0.94 5.87 -51.93 -0.30 0.63 16 43 H 0.14 1.30 7.43 -52.49 -0.39 0.91 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 46 H 0.19 0.27 8.06 -52.48 -0.42 -0.15 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -37.14 367.62 -11.06 -48.21 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.64 Total: -0.55 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -4.30 Total: 0.95 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.28 Total: -59.99 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.14 -11.06 -48.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049633523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.837 kcal (2) G-P(sol) polarization free energy of solvation -37.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds