Wall clock time and date at job start Tue Mar 31 2020 23:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47172 * 300.00008 * 3 2 1 6 6 H 1.48507 * 109.46863 * 59.99862 * 3 2 1 7 7 C 1.38808 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00058 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.46881 * 125.58270 * 359.96860 * 9 7 2 11 11 C 1.54061 * 107.70740 * 177.04753 * 10 9 7 12 12 C 1.54565 * 103.66995 * 342.84864 * 11 10 9 13 13 H 1.08994 * 108.79250 * 273.79132 * 12 11 10 14 14 C 1.47659 * 125.58162 * 179.97438 * 9 7 2 15 15 H 1.09001 * 110.56789 * 322.56876 * 14 9 7 16 16 C 1.52923 * 107.99243 * 83.58643 * 14 9 7 17 17 C 1.52936 * 109.79269 * 171.84390 * 16 14 9 18 18 C 1.53054 * 108.49498 * 294.00923 * 17 16 14 19 19 N 1.44189 * 111.47794 * 153.28238 * 12 11 10 20 20 C 1.34773 * 117.76154 * 93.66246 * 19 12 11 21 21 O 1.21647 * 119.99889 * 5.62740 * 20 19 12 22 22 C 1.47172 * 120.00378 * 185.62883 * 20 19 12 23 23 C 1.38584 * 120.72332 * 53.47598 * 22 20 19 24 24 C 1.38932 * 121.36212 * 180.02562 * 23 22 20 25 25 C 1.35822 * 122.59322 * 0.04883 * 24 23 22 26 26 C 1.40834 * 120.56293 * 0.22771 * 25 24 23 27 27 C 1.38425 * 134.90227 * 180.45204 * 26 25 24 28 28 N 1.33887 * 107.84825 * 179.50704 * 27 26 25 29 29 H 0.97001 * 125.01978 * 179.71337 * 28 27 26 30 30 N 1.39976 * 109.96114 * 359.75274 * 28 27 26 31 31 C 1.31480 * 109.01696 * 359.97438 * 30 28 27 32 32 H 0.97003 * 120.00350 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.81202 * 296.59975 * 10 9 7 34 34 H 1.09001 * 109.81314 * 57.43948 * 10 9 7 35 35 H 1.09005 * 110.56710 * 101.43033 * 11 10 9 36 36 H 1.09000 * 110.57430 * 224.15528 * 11 10 9 37 37 H 1.09008 * 109.41827 * 51.74341 * 16 14 9 38 38 H 1.09005 * 109.42102 * 291.94171 * 16 14 9 39 39 H 1.09000 * 109.63158 * 174.31208 * 17 16 14 40 40 H 1.08999 * 109.80060 * 53.80784 * 17 16 14 41 41 H 1.09008 * 109.45614 * 293.77792 * 18 17 16 42 42 H 1.08997 * 109.44572 * 173.81878 * 18 17 16 43 43 H 1.08000 * 119.32337 * 0.03240 * 23 22 20 44 44 H 1.07998 * 118.70054 * 180.02562 * 24 23 22 45 45 H 1.08005 * 119.71816 * 179.97438 * 25 24 23 46 46 H 1.08007 * 126.07221 * 359.29005 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1362 -2.5309 0.0007 11 6 -0.4600 -4.0352 -0.0750 12 6 0.8640 -4.6700 -0.5578 13 1 0.8919 -4.6383 -1.6470 14 6 1.9360 -3.7325 0.0005 15 1 2.8323 -3.7462 -0.6197 16 6 2.2793 -4.0955 1.4459 17 6 2.7261 -5.5562 1.5209 18 6 1.5335 -6.4475 1.1663 19 7 0.9842 -6.0384 -0.1194 20 6 0.5652 -7.0057 -0.9591 21 8 0.2004 -6.7190 -2.0836 22 6 0.5491 -8.4090 -0.5157 23 6 -0.1044 -8.7757 0.6500 24 6 -0.1276 -10.0962 1.0812 25 6 0.4814 -11.0997 0.3980 26 6 1.1781 -10.8329 -0.7965 27 6 1.8791 -11.6000 -1.7110 28 7 2.3247 -10.7843 -2.6747 29 1 2.8508 -11.0629 -3.4406 30 7 1.9199 -9.4701 -2.4134 31 6 1.2249 -9.4497 -1.2975 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5485 -2.1099 0.9176 34 1 -0.5577 -2.0175 -0.8636 35 1 -0.7331 -4.4181 0.9084 36 1 -1.2599 -4.2193 -0.7922 37 1 1.3998 -3.9528 2.0740 38 1 3.0845 -3.4516 1.7998 39 1 3.0657 -5.7838 2.5313 40 1 3.5370 -5.7310 0.8138 41 1 0.7671 -6.3516 1.9354 42 1 1.8611 -7.4855 1.1075 43 1 -0.6062 -8.0194 1.2354 44 1 -0.6501 -10.3340 1.9960 45 1 0.4343 -12.1103 0.7761 46 1 2.0411 -12.6663 -1.6550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049633523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:00 Heat of formation + Delta-G solvation = 74.711779 kcal Electronic energy + Delta-G solvation = -29989.123848 eV Core-core repulsion = 26073.169912 eV Total energy + Delta-G solvation = -3915.953937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.29276 -41.62782 -39.44733 -37.78317 -36.83231 -34.29095 -33.93252 -33.00866 -31.84983 -30.86553 -30.07768 -29.57785 -26.62228 -26.11498 -25.20054 -23.54302 -23.02589 -22.71168 -22.00028 -20.79676 -19.52629 -19.09494 -18.79676 -18.44157 -17.61758 -17.14862 -16.81505 -16.31302 -16.10538 -16.05417 -15.72965 -15.35255 -15.14998 -15.00591 -14.78547 -14.40890 -14.12069 -14.06974 -13.84079 -13.55027 -13.18062 -12.99605 -12.87001 -12.72141 -12.67353 -12.57363 -12.36007 -12.25571 -12.00960 -11.93412 -11.68464 -11.58895 -11.49685 -11.27606 -11.20491 -10.74146 -10.71975 -9.79426 -9.63061 -8.92439 -8.58173 -7.84847 -5.21908 -0.49252 0.90458 1.22592 1.44562 1.46477 1.56542 1.66755 1.89309 2.01758 2.49041 2.84670 3.27284 3.32469 3.44913 3.58487 3.76172 3.83316 3.95663 3.99058 4.10711 4.13152 4.25423 4.28380 4.33180 4.50457 4.53404 4.57161 4.58723 4.64065 4.74636 4.78744 4.83516 4.95101 5.00714 5.02650 5.17765 5.32715 5.37968 5.40583 5.47009 5.53866 5.61627 5.63363 5.69397 5.71948 5.96752 6.17607 6.29565 6.36920 6.62824 7.07876 7.15084 7.74008 8.39011 9.25332 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.002776 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.149302 B =10082.847848 C =10252.085224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.236 4.236 8 H 0.083 0.917 9 N -0.615 5.615 10 C 0.193 3.807 11 C -0.133 4.133 12 C 0.152 3.848 13 H 0.054 0.946 14 C 0.158 3.842 15 H 0.040 0.960 16 C -0.117 4.117 17 C -0.121 4.121 18 C 0.106 3.894 19 N -0.580 5.580 20 C 0.554 3.446 21 O -0.587 6.587 22 C -0.162 4.162 23 C -0.009 4.009 24 C -0.183 4.183 25 C 0.010 3.990 26 C -0.245 4.245 27 C 0.134 3.866 28 N -0.422 5.422 29 H 0.458 0.542 30 N -0.365 5.365 31 C 0.109 3.891 32 H 0.247 0.753 33 H 0.015 0.985 34 H 0.010 0.990 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.144 0.856 44 H 0.163 0.837 45 H 0.173 0.827 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -32.475 6.152 33.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.340 5.340 10 C 0.068 3.932 11 C -0.172 4.172 12 C 0.046 3.954 13 H 0.072 0.928 14 C 0.050 3.950 15 H 0.058 0.942 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.015 4.015 19 N -0.311 5.311 20 C 0.345 3.655 21 O -0.468 6.468 22 C -0.169 4.169 23 C -0.031 4.031 24 C -0.202 4.202 25 C -0.010 4.010 26 C -0.255 4.255 27 C -0.025 4.025 28 N -0.122 5.122 29 H 0.306 0.694 30 N -0.192 5.192 31 C -0.048 4.048 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.028 0.972 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.161 0.839 44 H 0.181 0.819 45 H 0.190 0.810 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.277 -31.303 4.570 31.923 hybrid contribution 0.070 1.431 -0.577 1.545 sum 4.346 -29.872 3.993 30.449 Atomic orbital electron populations 1.70206 1.06337 1.25203 1.58303 1.25668 0.96621 1.01018 1.02601 0.84980 0.78159 0.79325 0.76671 1.18940 1.22235 1.21575 1.19426 0.90913 0.83284 1.42831 0.89963 1.44765 1.01943 1.00522 1.86781 1.20714 0.84116 0.90391 0.97988 1.22893 0.96768 0.96276 1.01310 1.20627 0.95705 0.81028 0.98002 0.92783 1.20997 0.93462 0.84457 0.96034 0.94229 1.21884 1.00908 0.96423 0.96494 1.21813 0.97152 0.93435 1.03553 1.21880 0.96431 0.99826 0.83319 1.47004 1.61166 1.04348 1.18541 1.18875 0.76347 0.86386 0.83906 1.90753 1.49995 1.84181 1.21839 1.19518 1.09390 0.89049 0.98924 1.21487 0.92129 0.98834 0.90685 1.20684 1.05172 0.90950 1.03407 1.20811 0.89722 1.01142 0.89360 1.20094 1.11940 0.90959 1.02488 1.23792 0.92766 0.99232 0.86674 1.46498 1.39365 1.04817 1.21520 0.69430 1.77639 1.24200 0.97900 1.19500 1.21797 0.95772 0.94884 0.92301 0.94394 0.96673 0.97210 0.89985 0.92261 0.92509 0.92783 0.87181 0.92316 0.89515 0.87936 0.83865 0.81941 0.80998 0.73089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.41 10.29 21.65 0.22 -59.19 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.24 -13.70 10.27 84.03 0.86 -12.84 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.62 -33.38 2.94 -672.45 -1.97 -35.35 16 10 C 0.19 10.37 5.39 86.67 0.47 10.84 16 11 C -0.13 -5.77 6.46 31.49 0.20 -5.57 16 12 C 0.15 6.51 2.80 45.94 0.13 6.64 16 13 H 0.05 2.72 7.00 -2.39 -0.02 2.70 16 14 C 0.16 7.02 3.27 44.73 0.15 7.16 16 15 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 16 C -0.12 -4.20 5.31 30.55 0.16 -4.04 16 17 C -0.12 -3.12 6.10 30.59 0.19 -2.93 16 18 C 0.11 2.64 5.00 86.55 0.43 3.07 16 19 N -0.58 -20.13 2.79 -806.26 -2.25 -22.38 16 20 C 0.55 20.95 7.11 86.59 0.62 21.56 16 21 O -0.59 -28.27 16.34 -4.18 -0.07 -28.34 16 22 C -0.16 -4.68 4.53 -18.65 -0.08 -4.77 16 23 C -0.01 -0.18 7.89 22.52 0.18 0.00 16 24 C -0.18 -2.17 9.83 21.88 0.21 -1.95 16 25 C 0.01 0.09 10.02 22.34 0.22 0.32 16 26 C -0.24 -3.92 6.34 -20.25 -0.13 -4.05 16 27 C 0.13 1.14 12.08 84.42 1.02 2.16 16 28 N -0.42 -6.35 7.18 -56.28 -0.40 -6.75 16 29 H 0.46 3.38 8.96 -213.40 -1.91 1.46 16 30 N -0.36 -10.86 12.67 -45.22 -0.57 -11.43 16 31 C 0.11 3.03 7.49 43.75 0.33 3.36 16 32 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.02 0.87 7.60 -2.39 -0.02 0.86 16 34 H 0.01 0.59 7.25 -2.39 -0.02 0.57 16 35 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.06 2.11 8.02 -2.38 -0.02 2.09 16 38 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.77 7.86 -2.38 -0.02 1.75 16 42 H 0.10 2.16 5.87 -2.39 -0.01 2.15 16 43 H 0.14 2.37 7.43 -2.91 -0.02 2.34 16 44 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 45 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 46 H 0.25 -1.26 8.06 -2.91 -0.02 -1.28 16 Total: -1.00 -92.69 367.62 1.51 -91.18 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -0.90 Total: 7.31 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 5.42 Total: 15.53 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -4.98 Total: -135.10 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.07 Total: -28.34 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -92.69 1.51 -91.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049633523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.893 kcal (2) G-P(sol) polarization free energy of solvation -92.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds