Wall clock time and date at job start Tue Mar 31 2020 23:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99722 * 2 1 4 4 H 1.48499 * 109.47106 * 95.00699 * 3 2 1 5 5 H 1.48504 * 109.47075 * 215.00577 * 3 2 1 6 6 H 1.48503 * 109.47330 * 335.00541 * 3 2 1 7 7 C 1.38810 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99623 * 172.45138 * 7 2 1 9 9 N 1.36938 * 120.00410 * 352.45902 * 7 2 1 10 10 C 1.46886 * 125.57979 * 4.30145 * 9 7 2 11 11 C 1.54058 * 107.70535 * 182.97088 * 10 9 7 12 12 C 1.54064 * 103.74268 * 17.12995 * 11 10 9 13 13 H 1.09005 * 109.15861 * 85.79797 * 12 11 10 14 14 C 1.47657 * 125.58062 * 183.99645 * 9 7 2 15 15 H 1.08996 * 110.56981 * 38.35084 * 14 9 7 16 16 C 1.52336 * 108.31582 * 276.60778 * 14 9 7 17 17 C 1.52936 * 109.87151 * 188.15077 * 16 14 9 18 18 C 1.53055 * 108.49428 * 65.94189 * 17 16 14 19 19 N 1.44190 * 111.76786 * 206.73843 * 12 11 10 20 20 C 1.34770 * 117.76260 * 266.46581 * 19 12 11 21 21 O 1.21601 * 120.00432 * 170.36432 * 20 19 12 22 22 C 1.47514 * 120.00065 * 350.36595 * 20 19 12 23 23 C 1.41044 * 119.39563 * 28.46268 * 22 20 19 24 24 C 1.35186 * 121.66000 * 179.76153 * 23 22 20 25 25 C 1.41389 * 119.92766 * 0.49431 * 24 23 22 26 26 N 1.31919 * 134.38950 * 179.74896 * 25 24 23 27 27 N 1.39931 * 109.05881 * 180.02562 * 26 25 24 28 28 H 0.96996 * 124.98241 * 180.02562 * 27 26 25 29 29 C 1.33815 * 110.02541 * 0.02562 * 27 26 25 30 30 C 1.38545 * 107.83930 * 359.97438 * 29 27 26 31 31 C 1.38225 * 119.39452 * 208.73712 * 22 20 19 32 32 H 0.96996 * 120.00553 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.80545 * 302.51827 * 10 9 7 34 34 H 1.08993 * 109.81330 * 63.41918 * 10 9 7 35 35 H 1.09000 * 110.56922 * 135.69558 * 11 10 9 36 36 H 1.08998 * 110.56811 * 258.41540 * 11 10 9 37 37 H 1.09000 * 109.41900 * 68.00040 * 16 14 9 38 38 H 1.08995 * 109.27710 * 308.21823 * 16 14 9 39 39 H 1.08999 * 109.63572 * 306.23329 * 17 16 14 40 40 H 1.09004 * 109.80069 * 185.73890 * 17 16 14 41 41 H 1.08999 * 109.45337 * 186.17288 * 18 17 16 42 42 H 1.08993 * 109.44283 * 66.21026 * 18 17 16 43 43 H 1.08006 * 119.16767 * 0.02562 * 23 22 20 44 44 H 1.07993 * 120.03880 * 180.26525 * 24 23 22 45 45 H 1.08002 * 126.08224 * 180.02562 * 29 27 26 46 46 H 1.07993 * 120.32739 * 359.95833 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6034 1.9853 1.3947 5 1 3.4908 1.4731 -0.8032 6 1 1.3987 2.6809 -0.5916 7 6 2.0103 -1.2021 0.0005 8 1 3.0833 -1.2062 -0.1223 9 7 1.3345 -2.3829 0.1567 10 6 -0.1246 -2.5275 0.2432 11 6 -0.4340 -4.0164 0.4901 12 6 0.9111 -4.5953 0.9686 13 1 1.0016 -4.4478 2.0448 14 6 1.9531 -3.7197 0.2593 15 1 2.8727 -3.6724 0.8425 16 6 2.2280 -4.2294 -1.1497 17 6 2.6801 -5.6894 -1.0954 18 6 1.5123 -6.5410 -0.5919 19 7 1.0242 -6.0016 0.6709 20 6 0.6526 -6.8772 1.6257 21 8 0.5633 -8.0613 1.3634 22 6 0.3542 -6.3993 2.9890 23 6 -0.1293 -5.0871 3.1722 24 6 -0.4220 -4.6038 4.4003 25 6 -0.2349 -5.4173 5.5415 26 7 -0.4162 -5.2457 6.8369 27 7 -0.0555 -6.4193 7.5082 28 1 -0.0989 -6.5462 8.4688 29 6 0.3579 -7.3407 6.6303 30 6 0.2752 -6.7869 5.3630 31 6 0.5590 -7.2438 4.0639 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5067 -1.9287 1.0700 34 1 -0.5839 -2.2048 -0.6910 35 1 -1.1949 -4.1264 1.2628 36 1 -0.7547 -4.4991 -0.4330 37 1 3.0105 -3.6245 -1.6077 38 1 1.3172 -4.1539 -1.7437 39 1 3.5248 -5.7861 -0.4133 40 1 2.9736 -6.0223 -2.0910 41 1 1.8489 -7.5668 -0.4426 42 1 0.7086 -6.5260 -1.3280 43 1 -0.2734 -4.4539 2.3092 44 1 -0.7949 -3.5962 4.5100 45 1 0.6952 -8.3389 6.8673 46 1 0.9334 -8.2446 3.9075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049676527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:20 Heat of formation + Delta-G solvation = 142.391795 kcal Electronic energy + Delta-G solvation = -30427.193753 eV Core-core repulsion = 26514.174643 eV Total energy + Delta-G solvation = -3913.019111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.56541 -40.72811 -38.12879 -36.96297 -35.03571 -33.39601 -32.26023 -32.11978 -30.69201 -29.41973 -28.89015 -28.27936 -25.26917 -24.89826 -23.93856 -22.39938 -21.82507 -20.77969 -20.65182 -19.98141 -18.54374 -18.34436 -17.58615 -17.09832 -16.14798 -15.78647 -15.33798 -15.02260 -14.79984 -14.66332 -14.27817 -14.20769 -13.89131 -13.72094 -13.45392 -13.29555 -12.88963 -12.75283 -12.45346 -12.13239 -12.04871 -11.77601 -11.59138 -11.05406 -10.99043 -10.86260 -10.68294 -10.63276 -10.47309 -10.43002 -10.28003 -10.13501 -10.00883 -9.90299 -9.66960 -9.46948 -8.70621 -8.58833 -8.32616 -7.69163 -6.89760 -5.75784 -3.08718 0.41034 1.47817 2.23094 2.48158 3.00824 3.23596 3.39738 3.45230 3.46338 3.87559 4.13301 4.41904 4.45500 4.69957 4.92734 5.03768 5.05722 5.22981 5.25445 5.29776 5.31648 5.46719 5.48632 5.51701 5.55584 5.62277 5.74945 5.88717 6.04240 6.06431 6.12847 6.16674 6.22454 6.31390 6.32829 6.38904 6.45082 6.50389 6.53563 6.72665 6.76823 6.83207 6.95699 7.02513 7.42325 7.51520 7.54207 7.63096 7.78321 8.20662 8.37371 9.17528 9.77502 10.41770 11.35773 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011029 B = 0.004036 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.094341 B = 6936.719987 C = 8834.996002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.178 3.822 11 C -0.171 4.171 12 C 0.091 3.909 13 H 0.124 0.876 14 C 0.161 3.839 15 H 0.057 0.943 16 C -0.131 4.131 17 C -0.131 4.131 18 C 0.118 3.882 19 N -0.581 5.581 20 C 0.559 3.441 21 O -0.551 6.551 22 C -0.165 4.165 23 C -0.105 4.105 24 C -0.109 4.109 25 C 0.122 3.878 26 N -0.309 5.309 27 N -0.426 5.426 28 H 0.443 0.557 29 C 0.095 3.905 30 C -0.219 4.219 31 C 0.023 3.977 32 H 0.253 0.747 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.189 0.811 44 H 0.136 0.864 45 H 0.191 0.809 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 -15.657 9.751 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.210 4.210 12 C -0.013 4.013 13 H 0.140 0.860 14 C 0.053 3.947 15 H 0.075 0.925 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.004 4.004 19 N -0.311 5.311 20 C 0.348 3.652 21 O -0.431 6.431 22 C -0.169 4.169 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.033 4.033 26 N -0.137 5.137 27 N -0.125 5.125 28 H 0.287 0.713 29 C -0.063 4.063 30 C -0.229 4.229 31 C 0.001 3.999 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.205 0.795 44 H 0.154 0.846 45 H 0.207 0.793 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.488 -15.117 10.494 18.409 hybrid contribution 0.677 0.326 -0.109 0.759 sum 1.165 -14.791 10.385 18.110 Atomic orbital electron populations 1.69951 1.04866 1.25214 1.56481 1.24778 0.95654 0.97563 1.01965 0.86187 0.78631 0.83533 0.77700 1.21496 1.20796 1.21768 1.18984 0.91192 0.82259 1.43247 0.90379 1.44489 1.01451 1.00210 1.85816 1.21100 0.84679 0.87665 1.01299 1.23320 0.96146 1.00503 1.00991 1.22496 0.97059 0.79252 1.02499 0.85957 1.20852 0.94288 0.86085 0.93484 0.92505 1.22003 1.01597 0.93519 0.99990 1.21853 0.97422 0.96756 1.00978 1.21305 0.96457 0.97924 0.84708 1.46912 1.63386 1.06142 1.14645 1.18333 0.76667 0.85514 0.84643 1.90726 1.53417 1.16650 1.82318 1.19487 1.08728 0.95632 0.93080 1.22675 0.94755 0.94963 1.00180 1.19907 1.04517 0.99864 0.88739 1.21174 0.96397 0.93852 0.91857 1.77695 1.28048 1.02525 1.05439 1.46334 1.46165 1.09822 1.10211 0.71262 1.22789 0.98405 0.95873 0.89251 1.19534 1.13862 0.96016 0.93467 1.20519 0.92528 0.98034 0.88770 0.93651 0.92639 0.93893 0.90692 0.91286 0.91864 0.91937 0.91807 0.91139 0.89750 0.92158 0.79493 0.84608 0.79256 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.70 10.34 55.49 0.57 -25.12 16 2 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 3 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -5.99 10.26 -15.06 -0.15 -6.15 16 8 H 0.08 1.99 7.84 -52.48 -0.41 1.58 16 9 N -0.60 -13.93 2.95 -163.94 -0.48 -14.41 16 10 C 0.18 3.97 5.40 -3.28 -0.02 3.96 16 11 C -0.17 -2.99 5.75 -25.62 -0.15 -3.14 16 12 C 0.09 1.54 2.19 -68.36 -0.15 1.39 16 13 H 0.12 2.08 3.82 -67.90 -0.26 1.82 16 14 C 0.16 3.08 3.25 -67.39 -0.22 2.86 16 15 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 16 C -0.13 -2.25 5.30 -27.10 -0.14 -2.39 16 17 C -0.13 -1.81 6.10 -26.74 -0.16 -1.97 16 18 C 0.12 1.70 6.18 -4.43 -0.03 1.67 16 19 N -0.58 -9.17 2.80 -169.20 -0.47 -9.64 16 20 C 0.56 9.13 7.34 -12.48 -0.09 9.04 16 21 O -0.55 -10.03 15.94 5.28 0.08 -9.95 16 22 C -0.16 -2.47 5.59 -105.06 -0.59 -3.06 16 23 C -0.10 -1.57 7.18 -39.61 -0.28 -1.86 16 24 C -0.11 -1.61 10.06 -39.47 -0.40 -2.01 16 25 C 0.12 1.75 7.49 -82.98 -0.62 1.13 16 26 N -0.31 -4.16 12.69 33.30 0.42 -3.73 16 27 N -0.43 -3.64 7.17 30.87 0.22 -3.42 16 28 H 0.44 1.92 8.96 -182.73 -1.64 0.28 16 29 C 0.10 0.77 12.09 -16.57 -0.20 0.57 16 30 C -0.22 -2.68 6.32 -105.23 -0.66 -3.34 16 31 C 0.02 0.30 9.63 -38.69 -0.37 -0.07 16 32 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.06 1.37 7.23 -51.93 -0.38 0.99 16 34 H 0.04 1.08 7.64 -51.93 -0.40 0.68 16 35 H 0.08 1.19 6.29 -51.93 -0.33 0.87 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.15 8.01 -51.93 -0.42 0.74 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.19 7.11 -51.93 -0.37 0.83 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.19 2.93 1.55 -53.20 -0.08 2.85 16 44 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 45 H 0.19 0.61 8.06 -52.49 -0.42 0.18 16 46 H 0.13 1.54 7.84 -52.49 -0.41 1.13 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -32.80 357.94 -10.83 -43.63 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.20 Total: 4.42 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -4.34 Total: -3.56 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.26 Total: -56.33 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.80 -10.83 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049676527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.020 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds