Wall clock time and date at job start Tue Mar 31 2020 23:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48502 * 109.46981 * 239.99883 * 3 2 1 5 5 H 1.48496 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47142 * 120.00321 * 3 2 1 7 7 C 1.38808 * 120.00514 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00308 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99686 * 359.97438 * 7 2 1 10 10 C 1.48375 * 126.56175 * 0.02562 * 9 7 2 11 11 C 1.56617 * 107.26525 * 173.96889 * 10 9 7 12 12 C 1.53437 * 101.18692 * 338.29898 * 11 10 9 13 13 H 1.08997 * 111.14603 * 280.90220 * 12 11 10 14 14 C 1.45027 * 126.56039 * 180.02562 * 9 7 2 15 15 H 1.08992 * 108.26296 * 96.08349 * 14 9 7 16 16 C 1.51083 * 119.18432 * 331.20662 * 14 9 7 17 17 C 1.53878 * 107.40477 * 176.16509 * 16 14 9 18 18 C 1.52709 * 111.52925 * 56.88315 * 17 16 14 19 19 N 1.45722 * 116.37370 * 152.43651 * 12 11 10 20 20 C 1.34776 * 122.23375 * 9.03980 * 19 12 11 21 21 O 1.21661 * 119.99536 * 354.34797 * 20 19 12 22 22 C 1.46931 * 120.00180 * 174.33926 * 20 19 12 23 23 C 1.36480 * 126.72493 * 324.66508 * 22 20 19 24 24 N 1.35359 * 109.77146 * 179.97438 * 23 22 20 25 25 H 0.97003 * 124.82428 * 180.02562 * 24 23 22 26 26 C 1.37865 * 110.35175 * 359.97438 * 24 23 22 27 27 C 1.39227 * 133.47306 * 180.02562 * 26 24 23 28 28 C 1.38330 * 118.29376 * 179.97438 * 27 26 24 29 29 C 1.38601 * 119.64674 * 0.02562 * 28 27 26 30 30 N 1.31635 * 121.19267 * 359.97438 * 29 28 27 31 31 C 1.32693 * 121.42477 * 359.72102 * 30 29 28 32 32 H 0.96993 * 120.00587 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.95918 * 293.85857 * 10 9 7 34 34 H 1.08997 * 109.95998 * 55.06112 * 10 9 7 35 35 H 1.09000 * 111.47352 * 220.26562 * 11 10 9 36 36 H 1.08993 * 110.95854 * 96.12053 * 11 10 9 37 37 H 1.08997 * 109.88419 * 56.66886 * 16 14 9 38 38 H 1.08997 * 109.88599 * 295.65516 * 16 14 9 39 39 H 1.08992 * 109.06760 * 177.41765 * 17 16 14 40 40 H 1.09003 * 109.06594 * 296.43075 * 17 16 14 41 41 H 1.09001 * 109.15509 * 71.88031 * 18 17 16 42 42 H 1.08998 * 109.16156 * 191.11539 * 18 17 16 43 43 H 1.08000 * 125.11204 * 359.97438 * 23 22 20 44 44 H 1.08000 * 120.85002 * 0.02562 * 27 26 24 45 45 H 1.08006 * 120.17613 * 179.97438 * 28 27 26 46 46 H 1.07997 * 119.40296 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1484 -2.5576 -0.0005 11 6 -0.4402 -4.0884 -0.1577 12 6 0.8716 -4.5786 -0.7847 13 1 0.9031 -4.3601 -1.8520 14 6 1.9026 -3.7186 -0.0005 15 1 1.9378 -4.0756 1.0287 16 6 3.2562 -3.9347 -0.6359 17 6 3.6464 -5.4042 -0.3993 18 6 2.5934 -6.3602 -0.9553 19 7 1.2358 -5.9651 -0.5228 20 6 0.3913 -6.8298 0.0736 21 8 -0.6763 -6.4374 0.5053 22 6 0.7600 -8.2463 0.2021 23 6 1.4691 -8.9898 -0.6962 24 7 1.6124 -10.2535 -0.2328 25 1 2.0807 -10.9643 -0.6979 26 6 0.9993 -10.3864 0.9949 27 6 0.8545 -11.4486 1.8833 28 6 0.1604 -11.2295 3.0596 29 6 -0.3672 -9.9747 3.3208 30 7 -0.2200 -8.9824 2.4686 31 6 0.4424 -9.1409 1.3298 32 1 -0.4851 0.8399 0.0004 33 1 -0.5654 -2.1885 0.9365 34 1 -0.5851 -2.0173 -0.8404 35 1 -1.2828 -4.2674 -0.8255 36 1 -0.6073 -4.5550 0.8130 37 1 3.9920 -3.2767 -0.1735 38 1 3.1999 -3.7338 -1.7057 39 1 4.6005 -5.6023 -0.8875 40 1 3.7521 -5.5765 0.6719 41 1 2.6394 -6.3488 -2.0443 42 1 2.8022 -7.3689 -0.5991 43 1 1.8574 -8.6248 -1.6356 44 1 1.2740 -12.4184 1.6601 45 1 0.0295 -12.0322 3.7703 46 1 -0.9087 -9.8082 4.2402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049851065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:21 Heat of formation + Delta-G solvation = 88.092170 kcal Electronic energy + Delta-G solvation = -30022.676014 eV Core-core repulsion = 26107.302295 eV Total energy + Delta-G solvation = -3915.373719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.94810 -39.98575 -38.16134 -37.36569 -35.29557 -33.05304 -32.47958 -32.10455 -30.45416 -29.85062 -28.62535 -28.05307 -24.92936 -24.42052 -24.03448 -22.81496 -22.29899 -21.38420 -20.58628 -19.51759 -18.90411 -17.91542 -17.15098 -16.60850 -16.40222 -15.80450 -15.57314 -15.23767 -14.88228 -14.75713 -14.48608 -14.10225 -14.03536 -13.54528 -13.41020 -13.32818 -12.97639 -12.79080 -12.77206 -12.41917 -12.29257 -12.13181 -11.73970 -11.49029 -11.04773 -10.77685 -10.67106 -10.50898 -10.41600 -10.35169 -10.03965 -9.87680 -9.72303 -9.52427 -9.44926 -8.84844 -8.73290 -8.49396 -8.32398 -8.06753 -6.72775 -5.61168 -2.95236 0.66080 1.10565 1.90526 2.56724 3.14799 3.44532 3.45838 3.49952 3.51587 3.84722 4.01769 4.34224 4.52564 4.56885 4.67889 4.74004 4.88647 4.95909 5.13274 5.17136 5.25246 5.31422 5.42965 5.48029 5.50525 5.68980 5.73926 5.84760 5.85614 5.95538 5.97570 6.09065 6.10578 6.19509 6.35368 6.39229 6.49904 6.61216 6.68131 6.83612 6.90012 6.96715 7.04696 7.35556 7.67713 7.78656 7.85460 7.94893 7.98752 8.34840 8.66847 9.28390 9.92247 10.61694 11.50667 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021815 B = 0.002882 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.204710 B = 9712.580983 C =10288.261928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.137 4.137 12 C 0.120 3.880 13 H 0.078 0.922 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.599 5.599 20 C 0.589 3.411 21 O -0.513 6.513 22 C -0.198 4.198 23 C 0.109 3.891 24 N -0.576 5.576 25 H 0.421 0.579 26 C 0.034 3.966 27 C -0.081 4.081 28 C -0.159 4.159 29 C 0.097 3.903 30 N -0.433 5.433 31 C 0.136 3.864 32 H 0.252 0.748 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.189 0.811 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 -26.918 -1.703 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.175 4.175 12 C 0.016 3.984 13 H 0.095 0.905 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.153 4.153 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.333 5.333 20 C 0.377 3.623 21 O -0.388 6.388 22 C -0.210 4.210 23 C -0.024 4.024 24 N -0.179 5.179 25 H 0.259 0.741 26 C -0.074 4.074 27 C -0.109 4.109 28 C -0.180 4.180 29 C -0.069 4.069 30 N -0.141 5.141 31 C 0.002 3.998 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.206 0.794 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.366 -25.669 -1.364 26.259 hybrid contribution 1.212 -0.337 -0.481 1.346 sum 6.577 -26.006 -1.845 26.888 Atomic orbital electron populations 1.69939 1.04846 1.25079 1.56830 1.24796 0.95652 0.97547 1.02429 0.86241 0.78454 0.83512 0.77779 1.21267 1.21657 1.21273 1.18935 0.90253 0.82271 1.43858 0.90482 1.44065 1.01853 0.99307 1.86552 1.21917 0.83450 0.88773 1.00926 1.23269 0.94211 0.97906 1.02116 1.22375 0.98733 0.78305 0.98968 0.90450 1.20761 0.91355 0.87167 0.95852 0.96422 1.21418 0.98618 0.94103 1.01178 1.21892 0.97470 0.95821 1.01615 1.21909 0.82195 0.98803 0.98995 1.47845 1.14004 1.11372 1.60077 1.17071 0.83909 0.83464 0.77857 1.90809 1.23451 1.77589 1.46951 1.20127 1.09520 0.95153 0.96208 1.22314 0.97430 0.83290 0.99348 1.41336 1.48248 1.11490 1.16813 0.74095 1.19092 1.01686 0.97627 0.88966 1.20477 1.00353 0.96925 0.93180 1.21894 0.99688 0.99175 0.97284 1.22769 0.97804 0.88195 0.98170 1.67121 1.12308 1.33275 1.01351 1.19502 0.97063 0.90344 0.92869 0.93720 0.94257 0.92790 0.92211 0.89108 0.91573 0.91828 0.91093 0.91856 0.91684 0.90215 0.79432 0.84948 0.84229 0.82312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.87 10.46 55.49 0.58 -27.28 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -6.35 9.94 -15.06 -0.15 -6.50 16 8 H 0.08 2.07 7.31 -52.49 -0.38 1.69 16 9 N -0.59 -15.69 3.35 -162.56 -0.54 -16.23 16 10 C 0.17 4.57 5.49 -1.06 -0.01 4.56 16 11 C -0.14 -3.07 5.25 -24.55 -0.13 -3.20 16 12 C 0.12 2.37 3.28 -66.81 -0.22 2.16 16 13 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 14 C 0.16 3.43 2.59 -68.37 -0.18 3.25 16 15 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 16 C -0.11 -2.00 5.44 -27.24 -0.15 -2.14 16 17 C -0.13 -1.67 5.93 -26.42 -0.16 -1.82 16 18 C 0.10 1.21 5.32 -3.45 -0.02 1.20 16 19 N -0.60 -9.81 2.92 -165.44 -0.48 -10.29 16 20 C 0.59 10.52 7.63 -12.74 -0.10 10.42 16 21 O -0.51 -11.31 13.79 5.22 0.07 -11.23 16 22 C -0.20 -2.81 5.58 -103.28 -0.58 -3.39 16 23 C 0.11 0.96 9.49 -16.63 -0.16 0.80 16 24 N -0.58 -4.05 5.98 -10.46 -0.06 -4.11 16 25 H 0.42 1.22 8.96 -40.82 -0.37 0.85 16 26 C 0.03 0.35 7.27 -83.94 -0.61 -0.26 16 27 C -0.08 -0.64 10.19 -39.18 -0.40 -1.04 16 28 C -0.16 -1.29 10.09 -39.41 -0.40 -1.69 16 29 C 0.10 1.09 11.16 -17.50 -0.20 0.89 16 30 N -0.43 -6.85 10.41 -9.70 -0.10 -6.95 16 31 C 0.14 2.00 7.49 -82.92 -0.62 1.37 16 32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.04 1.14 7.81 -51.93 -0.41 0.73 16 34 H 0.05 1.53 7.19 -51.93 -0.37 1.15 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 2.20 5.96 -51.93 -0.31 1.89 16 37 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 38 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.74 4.75 -51.93 -0.25 0.49 16 43 H 0.19 0.98 6.87 -52.49 -0.36 0.62 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 46 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -38.14 361.33 -10.47 -48.61 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.20 Total: 0.28 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -4.15 Total: 4.29 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.61 Total: -64.87 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.23 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.14 -10.47 -48.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049851065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.706 kcal (2) G-P(sol) polarization free energy of solvation -38.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds