Wall clock time and date at job start Tue Mar 31 2020 23:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47345 * 270.00182 * 3 2 1 5 5 H 1.48504 * 109.47416 * 29.99909 * 3 2 1 6 6 H 1.48505 * 109.47489 * 150.00127 * 3 2 1 7 7 C 1.38810 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00493 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99875 * 0.02562 * 7 2 1 10 10 C 1.47127 * 125.76412 * 0.02562 * 9 7 2 11 11 C 1.55469 * 107.59737 * 183.31305 * 10 9 7 12 12 C 1.54414 * 102.03595 * 20.48164 * 11 10 9 13 13 H 1.08996 * 110.00702 * 81.70083 * 12 11 10 14 14 C 1.48209 * 125.76875 * 179.97438 * 9 7 2 15 15 H 1.08996 * 112.30427 * 33.47385 * 14 9 7 16 16 C 1.53002 * 107.11456 * 270.87246 * 14 9 7 17 17 C 1.52737 * 110.80260 * 191.92466 * 16 14 9 18 18 C 1.54557 * 108.22447 * 64.07315 * 17 16 14 19 19 N 1.45121 * 111.60779 * 204.05010 * 12 11 10 20 20 C 1.34779 * 119.58055 * 248.63193 * 19 12 11 21 21 O 1.21665 * 119.99493 * 4.16741 * 20 19 12 22 22 C 1.46930 * 120.00325 * 184.17488 * 20 19 12 23 23 C 1.36481 * 126.72301 * 309.76696 * 22 20 19 24 24 N 1.35355 * 109.77332 * 180.02562 * 23 22 20 25 25 H 0.96994 * 124.82571 * 179.97438 * 24 23 22 26 26 C 1.37862 * 110.35049 * 0.23885 * 24 23 22 27 27 C 1.39230 * 133.47429 * 180.40929 * 26 24 23 28 28 C 1.38334 * 118.29974 * 179.60705 * 27 26 24 29 29 C 1.38602 * 119.64130 * 359.74395 * 28 27 26 30 30 N 1.31626 * 121.19340 * 0.03182 * 29 28 27 31 31 C 1.32694 * 121.42961 * 359.96418 * 30 29 28 32 32 H 0.96995 * 119.99986 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.88246 * 301.98709 * 10 9 7 34 34 H 1.08993 * 109.88374 * 63.16793 * 10 9 7 35 35 H 1.08998 * 110.46747 * 262.61588 * 11 10 9 36 36 H 1.09002 * 111.54641 * 138.82237 * 11 10 9 37 37 H 1.08999 * 109.21721 * 312.27341 * 16 14 9 38 38 H 1.09010 * 109.21269 * 71.58553 * 16 14 9 39 39 H 1.09007 * 109.64454 * 183.46256 * 17 16 14 40 40 H 1.08999 * 109.64603 * 303.87701 * 17 16 14 41 41 H 1.09002 * 109.24526 * 182.50374 * 18 17 16 42 42 H 1.09004 * 110.99339 * 61.19952 * 18 17 16 43 43 H 1.08005 * 125.11096 * 0.02562 * 23 22 20 44 44 H 1.07999 * 120.85084 * 359.36163 * 27 26 24 45 45 H 1.08002 * 120.18205 * 179.77093 * 28 27 26 46 46 H 1.07996 * 119.40132 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1381 -2.5359 -0.0005 11 6 -0.4572 -4.0551 0.0855 12 6 0.8578 -4.6284 0.6568 13 1 0.8800 -4.5033 1.7394 14 6 1.9340 -3.7396 0.0005 15 1 2.8708 -3.7715 0.5567 16 6 2.1391 -4.1410 -1.4616 17 6 2.4852 -5.6244 -1.5734 18 6 1.2742 -6.4425 -1.0704 19 7 1.0224 -6.0295 0.3164 20 6 0.9482 -6.9629 1.2858 21 8 0.6695 -6.6366 2.4243 22 6 1.2041 -8.3744 0.9679 23 6 0.6447 -9.0970 -0.0458 24 7 1.1229 -10.3631 -0.0237 25 1 0.8704 -11.0615 -0.6475 26 6 2.0154 -10.5204 1.0152 27 6 2.7791 -11.5929 1.4680 28 6 3.5982 -11.3977 2.5655 29 6 3.6418 -10.1541 3.1757 30 7 2.9158 -9.1504 2.7306 31 6 2.1150 -9.2876 1.6815 32 1 -0.4850 0.8400 0.0004 33 1 -0.5622 -2.0325 0.8683 34 1 -0.5527 -2.1133 -0.9156 35 1 -0.6572 -4.4593 -0.9067 36 1 -1.2906 -4.2515 0.7601 37 1 1.2241 -3.9430 -2.0197 38 1 2.9515 -3.5503 -1.8852 39 1 2.6873 -5.8762 -2.6145 40 1 3.3641 -5.8425 -0.9666 41 1 1.5199 -7.5040 -1.1012 42 1 0.3916 -6.2487 -1.6801 43 1 -0.0718 -8.7159 -0.7584 44 1 2.7301 -12.5538 0.9773 45 1 4.2009 -12.2099 2.9445 46 1 4.2824 -10.0061 4.0325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049851071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:29 Heat of formation + Delta-G solvation = 79.012097 kcal Electronic energy + Delta-G solvation = -29922.811457 eV Core-core repulsion = 26007.043996 eV Total energy + Delta-G solvation = -3915.767461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.98420 -39.99134 -38.20135 -37.58487 -35.10789 -33.08774 -32.25668 -32.15699 -30.48709 -29.87444 -28.80117 -28.01382 -25.00460 -24.30470 -24.02035 -22.90605 -22.50904 -21.87861 -20.06244 -19.57863 -18.54813 -17.85311 -17.19686 -16.82931 -16.73132 -16.25694 -15.52575 -15.19238 -14.90987 -14.69761 -14.48033 -14.20071 -13.77910 -13.58999 -13.50622 -13.36784 -13.02935 -12.84669 -12.73987 -12.52141 -12.26552 -11.96217 -11.82465 -11.33505 -10.95790 -10.91516 -10.74861 -10.62108 -10.55243 -10.35414 -10.03349 -9.99883 -9.65051 -9.57080 -9.52932 -9.34917 -8.75702 -8.56799 -8.37597 -8.11240 -6.79997 -5.65649 -2.99440 0.64381 1.08270 1.93488 2.55452 3.01170 3.39375 3.44437 3.49654 3.51572 3.77029 3.98905 4.33308 4.51049 4.54252 4.65826 4.71830 4.94798 5.00949 5.14841 5.22414 5.23593 5.32717 5.43907 5.49277 5.53652 5.66307 5.72289 5.75422 5.82171 5.91931 5.97302 6.08096 6.08784 6.18969 6.28701 6.39296 6.44166 6.58319 6.58846 6.69303 6.82751 6.93081 7.08889 7.15721 7.61110 7.67152 7.75697 7.88418 7.93123 8.29282 8.55405 9.26408 9.85962 10.52363 11.45580 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.002762 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.043011 B =10134.803811 C =10415.580487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.182 3.818 11 C -0.152 4.152 12 C 0.133 3.867 13 H 0.101 0.899 14 C 0.157 3.843 15 H 0.059 0.941 16 C -0.129 4.129 17 C -0.131 4.131 18 C 0.100 3.900 19 N -0.589 5.589 20 C 0.585 3.415 21 O -0.527 6.527 22 C -0.196 4.196 23 C 0.110 3.890 24 N -0.576 5.576 25 H 0.422 0.578 26 C 0.036 3.964 27 C -0.080 4.080 28 C -0.159 4.159 29 C 0.098 3.902 30 N -0.438 5.438 31 C 0.134 3.866 32 H 0.252 0.748 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.189 0.811 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -27.023 -3.972 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.057 3.943 11 C -0.191 4.191 12 C 0.029 3.971 13 H 0.119 0.881 14 C 0.048 3.952 15 H 0.077 0.923 16 C -0.169 4.169 17 C -0.170 4.170 18 C -0.023 4.023 19 N -0.321 5.321 20 C 0.373 3.627 21 O -0.403 6.403 22 C -0.208 4.208 23 C -0.023 4.023 24 N -0.178 5.178 25 H 0.260 0.740 26 C -0.072 4.072 27 C -0.108 4.108 28 C -0.180 4.180 29 C -0.069 4.069 30 N -0.146 5.146 31 C 0.001 3.999 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.206 0.794 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.819 -25.771 -3.027 26.101 hybrid contribution 0.268 -0.299 -0.908 0.993 sum 3.087 -26.070 -3.934 26.545 Atomic orbital electron populations 1.69958 1.04840 1.24974 1.57161 1.24787 0.95703 0.97573 1.02369 0.86127 0.78634 0.83604 0.77445 1.21732 1.21729 1.20702 1.19039 0.90417 0.82208 1.43543 0.90450 1.44683 1.01478 0.99299 1.86745 1.21309 0.84207 0.87693 1.01119 1.23263 0.96421 0.99793 0.99659 1.21771 0.96315 0.77786 1.01225 0.88140 1.21337 0.94635 0.86074 0.93148 0.92256 1.22103 1.01817 0.93110 0.99851 1.22097 0.97380 0.97149 1.00411 1.22234 0.98273 0.99305 0.82445 1.47522 1.70542 1.06633 1.07402 1.17216 0.77086 0.83681 0.84757 1.90809 1.47378 1.81473 1.20639 1.19947 1.05813 0.95011 0.99983 1.22173 0.98692 0.83349 0.98094 1.41310 1.37569 1.11644 1.27310 0.74025 1.19066 0.97405 0.97609 0.93103 1.20486 0.96088 0.96811 0.97448 1.21888 1.00256 0.99290 0.96595 1.22740 0.96714 0.88139 0.99284 1.67081 1.04395 1.32928 1.10172 1.19462 0.96857 0.90474 0.93154 0.93795 0.93188 0.94004 0.92424 0.91884 0.91890 0.92272 0.91686 0.91775 0.90085 0.91115 0.79446 0.84898 0.84199 0.82311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 10.33 55.49 0.57 -26.71 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.25 10.29 -15.06 -0.15 -6.41 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.24 2.91 -161.61 -0.47 -15.71 16 10 C 0.18 4.46 5.19 -2.39 -0.01 4.45 16 11 C -0.15 -2.98 6.19 -24.68 -0.15 -3.13 16 12 C 0.13 2.63 3.03 -67.28 -0.20 2.42 16 13 H 0.10 2.28 6.98 -51.93 -0.36 1.92 16 14 C 0.16 3.30 3.60 -66.34 -0.24 3.06 16 15 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 16 C -0.13 -2.29 5.11 -26.87 -0.14 -2.42 16 17 C -0.13 -1.78 6.15 -26.05 -0.16 -1.94 16 18 C 0.10 1.23 5.58 -3.02 -0.02 1.21 16 19 N -0.59 -9.61 2.72 -165.71 -0.45 -10.06 16 20 C 0.59 10.33 7.55 -12.74 -0.10 10.23 16 21 O -0.53 -11.66 16.45 5.22 0.09 -11.58 16 22 C -0.20 -2.73 5.24 -103.28 -0.54 -3.27 16 23 C 0.11 0.95 9.42 -16.63 -0.16 0.80 16 24 N -0.58 -3.96 5.98 -10.46 -0.06 -4.02 16 25 H 0.42 1.18 8.96 -40.82 -0.37 0.81 16 26 C 0.04 0.36 7.27 -83.94 -0.61 -0.25 16 27 C -0.08 -0.61 10.19 -39.18 -0.40 -1.01 16 28 C -0.16 -1.24 10.09 -39.41 -0.40 -1.64 16 29 C 0.10 1.05 11.16 -17.51 -0.20 0.85 16 30 N -0.44 -6.70 10.41 -9.71 -0.10 -6.80 16 31 C 0.13 1.92 7.51 -82.92 -0.62 1.29 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 34 H 0.04 1.11 7.60 -51.93 -0.39 0.72 16 35 H 0.06 1.01 6.91 -51.93 -0.36 0.65 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.17 7.21 -51.93 -0.37 0.80 16 38 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.79 4.58 -51.93 -0.24 0.55 16 42 H 0.07 0.78 7.54 -51.93 -0.39 0.38 16 43 H 0.19 0.98 7.55 -52.48 -0.40 0.59 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -37.28 364.38 -10.34 -47.61 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.19 Total: 0.45 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -4.19 Total: 3.93 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.51 Total: -63.30 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.28 -10.34 -47.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049851071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.627 kcal (2) G-P(sol) polarization free energy of solvation -37.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds