Wall clock time and date at job start Tue Mar 31 2020 23:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99905 * 2 1 4 4 H 1.48499 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47215 * 300.00559 * 3 2 1 6 6 H 1.48504 * 109.46895 * 60.00439 * 3 2 1 7 7 C 1.38814 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99667 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.48386 * 126.56176 * 0.03988 * 9 7 2 11 11 C 1.55474 * 106.97266 * 185.48803 * 10 9 7 12 12 C 1.53340 * 101.58076 * 22.39131 * 11 10 9 13 13 H 1.08994 * 111.35065 * 78.22336 * 12 11 10 14 14 C 1.45020 * 126.55839 * 180.02562 * 9 7 2 15 15 H 1.09001 * 108.70521 * 263.52662 * 14 9 7 16 16 C 1.51080 * 119.19983 * 28.81352 * 14 9 7 17 17 C 1.53872 * 107.34791 * 183.88472 * 16 14 9 18 18 C 1.52721 * 111.52111 * 303.07089 * 17 16 14 19 19 N 1.45732 * 116.42906 * 206.92770 * 12 11 10 20 20 C 1.34776 * 122.22509 * 350.62871 * 19 12 11 21 21 O 1.21668 * 119.99911 * 5.11781 * 20 19 12 22 22 C 1.46929 * 119.99929 * 185.11952 * 20 19 12 23 23 C 1.36473 * 126.72574 * 38.07248 * 22 20 19 24 24 N 1.35360 * 109.77702 * 179.97438 * 23 22 20 25 25 H 0.96998 * 124.83261 * 180.02562 * 24 23 22 26 26 C 1.37868 * 110.34571 * 0.02562 * 24 23 22 27 27 C 1.39228 * 133.47663 * 180.02562 * 26 24 23 28 28 C 1.38333 * 118.30113 * 179.97438 * 27 26 24 29 29 C 1.38602 * 119.64041 * 359.97438 * 28 27 26 30 30 N 1.31629 * 121.19605 * 0.02562 * 29 28 27 31 31 C 1.32700 * 121.42077 * 359.97438 * 30 29 28 32 32 H 0.96996 * 120.00224 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.96180 * 304.87497 * 10 9 7 34 34 H 1.08995 * 109.95602 * 66.07893 * 10 9 7 35 35 H 1.09005 * 110.98004 * 140.69536 * 11 10 9 36 36 H 1.08998 * 110.98910 * 264.50520 * 11 10 9 37 37 H 1.08999 * 109.88340 * 64.42518 * 16 14 9 38 38 H 1.09007 * 109.87837 * 303.34522 * 16 14 9 39 39 H 1.08995 * 109.07358 * 182.53795 * 17 16 14 40 40 H 1.09005 * 109.06602 * 63.58988 * 17 16 14 41 41 H 1.08997 * 109.15715 * 288.12732 * 18 17 16 42 42 H 1.09004 * 109.11340 * 168.91589 * 18 17 16 43 43 H 1.07997 * 125.11499 * 359.94243 * 23 22 20 44 44 H 1.07999 * 120.84947 * 359.97438 * 27 26 24 45 45 H 1.07997 * 120.17833 * 179.97438 * 28 27 26 46 46 H 1.07999 * 119.39915 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1486 -2.5576 -0.0008 11 6 -0.4304 -4.0800 0.1415 12 6 0.8733 -4.5761 0.7784 13 1 0.9026 -4.3558 1.8454 14 6 1.9025 -3.7186 -0.0005 15 1 1.9347 -4.0856 -1.0264 16 6 3.2558 -3.9351 0.6351 17 6 3.6450 -5.4046 0.3964 18 6 2.5915 -6.3605 0.9520 19 7 1.2343 -5.9642 0.5199 20 6 0.3889 -6.8274 -0.0772 21 8 -0.6807 -6.4345 -0.5038 22 6 0.7589 -8.2428 -0.2130 23 6 1.4269 -9.0031 0.7025 24 7 1.5856 -10.2600 0.2257 25 1 2.0309 -10.9801 0.6991 26 6 1.0244 -10.3712 -1.0287 27 6 0.9128 -11.4189 -1.9388 28 6 0.2690 -11.1789 -3.1395 29 6 -0.2427 -9.9180 -3.4028 30 7 -0.1277 -8.9396 -2.5299 31 6 0.4811 -9.1200 -1.3646 32 1 -0.4850 0.8400 0.0004 33 1 -0.5854 -2.0181 0.8395 34 1 -0.5654 -2.1876 -0.9375 35 1 -1.2827 -4.2595 0.7968 36 1 -0.5857 -4.5412 -0.8338 37 1 3.1990 -3.7359 1.7052 38 1 3.9918 -3.2770 0.1732 39 1 4.5993 -5.6040 0.8837 40 1 3.7511 -5.5753 -0.6750 41 1 2.6381 -6.3504 2.0409 42 1 2.8004 -7.3688 0.5944 43 1 1.7769 -8.6544 1.6628 44 1 1.3186 -12.3940 -1.7132 45 1 0.1657 -11.9697 -3.8677 46 1 -0.7450 -9.7351 -4.3412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049851073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:32 Heat of formation + Delta-G solvation = 86.872072 kcal Electronic energy + Delta-G solvation = -30033.708896 eV Core-core repulsion = 26118.282269 eV Total energy + Delta-G solvation = -3915.426627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.94486 -40.01562 -38.16693 -37.39034 -35.31935 -33.05292 -32.49149 -32.11106 -30.45404 -29.84348 -28.64484 -28.08143 -24.93762 -24.40763 -24.03371 -22.81123 -22.31242 -21.39411 -20.57064 -19.51379 -18.89684 -17.92515 -17.14907 -16.61792 -16.39831 -15.80088 -15.58149 -15.25123 -14.88274 -14.76258 -14.49254 -14.09579 -14.04097 -13.54819 -13.40880 -13.34715 -12.98326 -12.79155 -12.76972 -12.40808 -12.30985 -12.13805 -11.73194 -11.48148 -11.04929 -10.80554 -10.66882 -10.51331 -10.41421 -10.36039 -10.00139 -9.87438 -9.72940 -9.52969 -9.45606 -8.87491 -8.73411 -8.50204 -8.32284 -8.07298 -6.72979 -5.61694 -2.95580 0.66313 1.10656 1.91552 2.56854 3.13173 3.44038 3.45340 3.50075 3.52865 3.83849 4.01840 4.34431 4.52675 4.56686 4.68003 4.74095 4.89260 4.96688 5.13294 5.17333 5.25343 5.31901 5.43387 5.48075 5.50789 5.69129 5.74067 5.84713 5.85543 5.95893 5.98918 6.09098 6.10709 6.19740 6.37147 6.39976 6.49867 6.61237 6.68050 6.83470 6.90522 6.97019 7.04382 7.34408 7.68319 7.78365 7.85281 7.94892 7.98417 8.34332 8.66238 9.28030 9.91952 10.61188 11.50332 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021666 B = 0.002888 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.053631 B = 9693.888472 C =10235.049083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.134 4.134 12 C 0.120 3.880 13 H 0.078 0.922 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.114 4.114 17 C -0.129 4.129 18 C 0.105 3.895 19 N -0.599 5.599 20 C 0.590 3.410 21 O -0.513 6.513 22 C -0.198 4.198 23 C 0.109 3.891 24 N -0.576 5.576 25 H 0.421 0.579 26 C 0.034 3.966 27 C -0.080 4.080 28 C -0.159 4.159 29 C 0.097 3.903 30 N -0.434 5.434 31 C 0.136 3.864 32 H 0.251 0.749 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.188 0.812 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 -26.960 1.665 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.173 4.173 12 C 0.016 3.984 13 H 0.096 0.904 14 C 0.048 3.952 15 H 0.035 0.965 16 C -0.153 4.153 17 C -0.168 4.168 18 C -0.018 4.018 19 N -0.332 5.332 20 C 0.377 3.623 21 O -0.388 6.388 22 C -0.210 4.210 23 C -0.023 4.023 24 N -0.179 5.179 25 H 0.259 0.741 26 C -0.074 4.074 27 C -0.109 4.109 28 C -0.180 4.180 29 C -0.069 4.069 30 N -0.141 5.141 31 C 0.002 3.998 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.205 0.795 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.439 -25.718 1.328 26.320 hybrid contribution 1.154 -0.340 0.470 1.291 sum 6.593 -26.057 1.797 26.938 Atomic orbital electron populations 1.69968 1.04842 1.24821 1.57015 1.24803 0.95661 0.97560 1.02481 0.86085 0.78651 0.84084 0.77181 1.20600 1.21846 1.21860 1.19030 0.90318 0.82262 1.43560 0.90379 1.44090 1.01867 0.99302 1.86493 1.21737 0.83506 0.88920 1.01007 1.23031 0.94380 0.97838 1.02025 1.22258 0.98811 0.78337 0.99019 0.90416 1.20660 0.91410 0.87193 0.95902 0.96494 1.21416 0.98602 0.94108 1.01160 1.21896 0.97483 0.95821 1.01618 1.21866 0.82136 0.98761 0.98992 1.47844 1.14065 1.11273 1.60055 1.17070 0.83925 0.83476 0.77798 1.90815 1.23330 1.77566 1.47138 1.20111 1.10297 0.95186 0.95374 1.22262 0.97460 0.83340 0.99279 1.41328 1.50194 1.11673 1.14699 0.74094 1.19083 1.02374 0.97692 0.88202 1.20478 1.00556 0.97077 0.92817 1.21893 1.00000 0.99063 0.97085 1.22765 0.97621 0.88307 0.98232 1.67119 1.12463 1.33675 1.00869 1.19501 0.97476 0.90306 0.92526 0.93839 0.92676 0.94308 0.92217 0.89282 0.91809 0.91561 0.91102 0.91866 0.91686 0.90281 0.79497 0.84947 0.84226 0.82311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.84 10.46 55.49 0.58 -27.26 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.22 -6.30 9.94 -15.06 -0.15 -6.45 16 8 H 0.08 2.11 7.31 -52.49 -0.38 1.73 16 9 N -0.59 -15.67 3.35 -163.62 -0.55 -16.22 16 10 C 0.17 4.54 5.47 -1.69 -0.01 4.53 16 11 C -0.13 -3.02 5.12 -25.24 -0.13 -3.15 16 12 C 0.12 2.37 3.28 -67.13 -0.22 2.15 16 13 H 0.08 1.51 8.13 -51.93 -0.42 1.09 16 14 C 0.16 3.42 2.57 -68.66 -0.18 3.24 16 15 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 16 C -0.11 -1.99 5.45 -27.24 -0.15 -2.14 16 17 C -0.13 -1.68 5.92 -26.42 -0.16 -1.84 16 18 C 0.11 1.24 5.39 -3.45 -0.02 1.22 16 19 N -0.60 -9.80 2.92 -165.82 -0.48 -10.29 16 20 C 0.59 10.52 7.62 -12.74 -0.10 10.42 16 21 O -0.51 -11.31 13.83 5.22 0.07 -11.24 16 22 C -0.20 -2.80 5.50 -103.28 -0.57 -3.37 16 23 C 0.11 0.96 9.50 -16.63 -0.16 0.80 16 24 N -0.58 -4.05 5.98 -10.46 -0.06 -4.11 16 25 H 0.42 1.21 8.96 -40.82 -0.37 0.85 16 26 C 0.03 0.35 7.27 -83.94 -0.61 -0.26 16 27 C -0.08 -0.64 10.19 -39.18 -0.40 -1.04 16 28 C -0.16 -1.29 10.09 -39.41 -0.40 -1.69 16 29 C 0.10 1.09 11.16 -17.50 -0.20 0.89 16 30 N -0.43 -6.86 10.41 -9.70 -0.10 -6.96 16 31 C 0.14 1.99 7.50 -82.91 -0.62 1.37 16 32 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.05 1.56 7.19 -51.93 -0.37 1.19 16 34 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 2.16 6.03 -51.93 -0.31 1.85 16 37 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 38 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.74 4.89 -51.93 -0.25 0.49 16 43 H 0.19 0.98 7.09 -52.49 -0.37 0.60 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -38.15 361.63 -10.49 -48.65 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.22 Total: 0.15 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -4.15 Total: 4.34 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -0.62 Total: -64.83 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.15 -10.49 -48.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049851073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.518 kcal (2) G-P(sol) polarization free energy of solvation -38.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds