Wall clock time and date at job start Tue Mar 31 2020 23:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47148 * 239.99986 * 3 2 1 5 5 H 1.48504 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47069 * 120.00221 * 3 2 1 7 7 C 1.38807 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99913 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.47119 * 125.76769 * 0.03170 * 9 7 2 11 11 C 1.55472 * 107.60273 * 183.30772 * 10 9 7 12 12 C 1.54421 * 102.03225 * 20.47800 * 11 10 9 13 13 H 1.09004 * 110.00280 * 81.70133 * 12 11 10 14 14 C 1.48209 * 125.76962 * 179.97438 * 9 7 2 15 15 H 1.09003 * 112.30423 * 33.47604 * 14 9 7 16 16 C 1.53017 * 107.11720 * 270.88306 * 14 9 7 17 17 C 1.52730 * 110.79949 * 191.92648 * 16 14 9 18 18 C 1.54564 * 108.23118 * 64.06585 * 17 16 14 19 19 N 1.45118 * 111.60502 * 204.05301 * 12 11 10 20 20 C 1.34783 * 119.57366 * 248.63237 * 19 12 11 21 21 O 1.21661 * 120.00220 * 3.91685 * 20 19 12 22 22 C 1.46931 * 119.99483 * 184.19636 * 20 19 12 23 23 C 1.36358 * 126.83134 * 309.64620 * 22 20 19 24 24 N 1.35571 * 109.74948 * 180.02562 * 23 22 20 25 25 H 0.97004 * 124.71562 * 180.02562 * 24 23 22 26 26 C 1.37691 * 110.56131 * 0.02562 * 24 23 22 27 27 N 1.32675 * 132.94094 * 179.97438 * 26 24 23 28 28 C 1.31612 * 121.68866 * 179.97438 * 27 26 24 29 29 C 1.38580 * 121.54168 * 0.02562 * 28 27 26 30 30 C 1.38345 * 119.32816 * 359.97438 * 29 28 27 31 31 C 1.39359 * 118.05137 * 359.70324 * 30 29 28 32 32 H 0.97000 * 120.00487 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.88271 * 301.98766 * 10 9 7 34 34 H 1.08997 * 109.88787 * 63.15746 * 10 9 7 35 35 H 1.08998 * 110.46762 * 262.61406 * 11 10 9 36 36 H 1.08997 * 111.54735 * 138.81829 * 11 10 9 37 37 H 1.09000 * 109.20550 * 312.26522 * 16 14 9 38 38 H 1.08998 * 109.20937 * 71.58221 * 16 14 9 39 39 H 1.09010 * 109.64077 * 183.45576 * 17 16 14 40 40 H 1.08997 * 109.64601 * 303.87097 * 17 16 14 41 41 H 1.08999 * 109.24366 * 182.50271 * 18 17 16 42 42 H 1.09003 * 110.98596 * 61.19646 * 18 17 16 43 43 H 1.08003 * 125.11872 * 0.02582 * 23 22 20 44 44 H 1.07999 * 119.22698 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.33906 * 180.02562 * 29 28 27 46 46 H 1.07993 * 120.97437 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1381 -2.5359 -0.0007 11 6 -0.4572 -4.0552 0.0849 12 6 0.8584 -4.6288 0.6549 13 1 0.8813 -4.5042 1.7376 14 6 1.9339 -3.7395 -0.0016 15 1 2.8712 -3.7717 0.5539 16 6 2.1382 -4.1403 -1.4642 17 6 2.4841 -5.6236 -1.5768 18 6 1.2734 -6.4421 -1.0733 19 7 1.0227 -6.0296 0.3136 20 6 0.9492 -6.9635 1.2827 21 8 0.6758 -6.6372 2.4225 22 6 1.2054 -8.3747 0.9639 23 6 0.6458 -9.0990 -0.0469 24 7 1.1275 -10.3660 -0.0236 25 1 0.8747 -11.0646 -0.6473 26 6 2.0255 -10.5231 1.0083 27 7 2.7456 -11.5543 1.4306 28 6 3.5532 -11.4561 2.4651 29 6 3.6918 -10.2690 3.1665 30 6 2.9655 -9.1598 2.7715 31 6 2.1224 -9.2870 1.6692 32 1 -0.4851 0.8400 0.0004 33 1 -0.5616 -2.0329 0.8687 34 1 -0.5535 -2.1128 -0.9152 35 1 -0.6579 -4.4589 -0.9074 36 1 -1.2900 -4.2519 0.7600 37 1 1.2227 -3.9421 -2.0215 38 1 2.9502 -3.5494 -1.8879 39 1 2.6855 -5.8749 -2.6183 40 1 3.3634 -5.8419 -0.9708 41 1 1.5193 -7.5035 -1.1048 42 1 0.3905 -6.2479 -1.6824 43 1 -0.0728 -8.7202 -0.7586 44 1 4.1206 -12.3212 2.7751 45 1 4.3606 -10.2100 4.0125 46 1 3.0533 -8.2213 3.2986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049904736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:42 Heat of formation + Delta-G solvation = 79.221254 kcal Electronic energy + Delta-G solvation = -29933.329307 eV Core-core repulsion = 26017.570916 eV Total energy + Delta-G solvation = -3915.758391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97470 -40.08926 -38.19918 -37.66380 -35.19064 -33.18341 -32.34498 -32.22313 -30.52556 -29.80365 -28.83740 -28.05016 -25.06983 -24.34081 -24.00288 -22.90265 -22.54945 -21.94140 -20.11366 -19.56716 -18.70978 -17.97368 -17.17797 -16.86942 -16.54964 -16.26662 -15.58120 -15.28996 -14.88944 -14.74406 -14.60088 -14.25966 -13.81609 -13.67773 -13.55394 -13.37014 -13.11209 -12.83992 -12.59525 -12.47972 -12.18664 -12.01592 -11.89012 -11.39094 -11.00575 -10.97620 -10.78082 -10.67008 -10.61253 -10.44433 -10.10707 -10.09818 -9.83329 -9.63050 -9.59980 -9.47384 -8.79468 -8.61384 -8.36857 -8.18405 -6.85473 -5.70237 -3.04454 0.67758 1.08956 1.95405 2.38868 2.93091 3.30413 3.41520 3.45989 3.46959 3.67432 4.18583 4.38468 4.42965 4.49704 4.71711 4.91226 4.94852 4.97984 5.14307 5.17640 5.26586 5.34783 5.40193 5.48395 5.57686 5.60862 5.64791 5.70579 5.87409 5.98862 6.01984 6.09327 6.12088 6.12743 6.21394 6.32726 6.37451 6.52275 6.59321 6.61973 6.75234 6.88017 7.00317 7.07912 7.55604 7.60722 7.65652 7.71003 7.83102 8.24197 8.40064 9.21418 9.81010 10.47041 11.40843 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.002752 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.635331 B =10173.038681 C =10449.176828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.182 3.818 11 C -0.152 4.152 12 C 0.132 3.868 13 H 0.101 0.899 14 C 0.157 3.843 15 H 0.059 0.941 16 C -0.130 4.130 17 C -0.131 4.131 18 C 0.099 3.901 19 N -0.586 5.586 20 C 0.583 3.417 21 O -0.537 6.537 22 C -0.199 4.199 23 C 0.104 3.896 24 N -0.568 5.568 25 H 0.423 0.577 26 C 0.280 3.720 27 N -0.498 5.498 28 C 0.136 3.864 29 C -0.197 4.197 30 C -0.020 4.020 31 C -0.113 4.113 32 H 0.253 0.747 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.189 0.811 44 H 0.162 0.838 45 H 0.140 0.860 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 -23.091 -1.951 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.057 3.943 11 C -0.191 4.191 12 C 0.028 3.972 13 H 0.119 0.881 14 C 0.049 3.951 15 H 0.077 0.923 16 C -0.170 4.170 17 C -0.170 4.170 18 C -0.024 4.024 19 N -0.317 5.317 20 C 0.370 3.630 21 O -0.414 6.414 22 C -0.211 4.211 23 C -0.026 4.026 24 N -0.173 5.173 25 H 0.262 0.738 26 C 0.048 3.952 27 N -0.211 5.211 28 C -0.030 4.030 29 C -0.218 4.218 30 C -0.046 4.046 31 C -0.120 4.120 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.205 0.795 44 H 0.179 0.821 45 H 0.158 0.842 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.040 -23.462 -1.911 23.735 hybrid contribution 0.344 1.369 -0.055 1.413 sum 3.384 -22.093 -1.966 22.436 Atomic orbital electron populations 1.69943 1.04852 1.25168 1.56917 1.24788 0.95701 0.97594 1.02233 0.86206 0.78448 0.83259 0.77871 1.21235 1.21641 1.21168 1.18982 0.90380 0.82199 1.43909 0.90495 1.44667 1.01455 0.99264 1.86783 1.21313 0.84205 0.87652 1.01176 1.23267 0.96337 0.99822 0.99720 1.21804 0.96503 0.77749 1.01190 0.88135 1.21332 0.94524 0.86111 0.93180 0.92298 1.22116 1.01898 0.93131 0.99830 1.22097 0.97284 0.97092 1.00541 1.22270 0.98398 0.99493 0.82248 1.47550 1.69978 1.06665 1.07532 1.17328 0.76993 0.83832 0.84807 1.90800 1.48212 1.81716 1.20692 1.19998 1.05825 0.94777 1.00459 1.22116 0.99095 0.82923 0.98506 1.41252 1.36851 1.11869 1.27372 0.73829 1.18304 0.94614 0.90997 0.91321 1.66487 1.08395 1.30299 1.15909 1.22449 0.93633 0.97441 0.89440 1.21938 1.02975 0.93864 1.03018 1.21076 0.91532 0.99313 0.92728 1.19417 1.00660 0.93450 0.98441 0.93689 0.93175 0.93960 0.92371 0.91859 0.91858 0.92214 0.91580 0.91779 0.89856 0.91014 0.79454 0.82092 0.84239 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.33 55.49 0.57 -26.24 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.19 10.29 -15.06 -0.16 -6.34 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.79 2.91 -161.61 -0.47 -15.26 16 10 C 0.18 4.34 5.19 -2.39 -0.01 4.33 16 11 C -0.15 -2.87 6.19 -24.67 -0.15 -3.02 16 12 C 0.13 2.45 3.03 -67.28 -0.20 2.24 16 13 H 0.10 2.14 6.98 -51.93 -0.36 1.78 16 14 C 0.16 3.16 3.60 -66.34 -0.24 2.92 16 15 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.13 -2.21 5.11 -26.86 -0.14 -2.35 16 17 C -0.13 -1.68 6.15 -26.05 -0.16 -1.84 16 18 C 0.10 1.14 5.59 -3.03 -0.02 1.12 16 19 N -0.59 -8.87 2.72 -165.72 -0.45 -9.32 16 20 C 0.58 9.30 7.55 -12.74 -0.10 9.21 16 21 O -0.54 -10.68 16.45 5.22 0.09 -10.60 16 22 C -0.20 -2.55 5.24 -103.36 -0.54 -3.09 16 23 C 0.10 0.91 9.43 -16.58 -0.16 0.76 16 24 N -0.57 -4.71 5.97 -11.97 -0.07 -4.78 16 25 H 0.42 2.14 8.96 -40.82 -0.37 1.77 16 26 C 0.28 3.21 8.41 -155.53 -1.31 1.90 16 27 N -0.50 -5.59 10.39 -12.29 -0.13 -5.72 16 28 C 0.14 1.24 11.14 -17.52 -0.20 1.04 16 29 C -0.20 -1.81 10.10 -39.42 -0.40 -2.21 16 30 C -0.02 -0.24 10.21 -39.13 -0.40 -0.64 16 31 C -0.11 -1.46 6.38 -104.93 -0.67 -2.13 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.05 1.35 7.30 -51.93 -0.38 0.97 16 34 H 0.04 1.10 7.60 -51.93 -0.39 0.71 16 35 H 0.06 0.99 6.91 -51.93 -0.36 0.63 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.15 7.21 -51.93 -0.37 0.77 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.77 4.59 -51.93 -0.24 0.53 16 42 H 0.07 0.76 7.54 -51.93 -0.39 0.36 16 43 H 0.19 1.00 7.56 -52.48 -0.40 0.61 16 44 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -34.47 364.42 -11.12 -45.59 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.19 Total: 2.22 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -4.94 Total: 1.63 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.55 Total: -61.32 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.47 -11.12 -45.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049904736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.812 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds