Wall clock time and date at job start Tue Mar 31 2020 23:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47148 * 239.99986 * 3 2 1 5 5 H 1.48504 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47069 * 120.00221 * 3 2 1 7 7 C 1.38807 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99913 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.47119 * 125.76769 * 0.03170 * 9 7 2 11 11 C 1.55472 * 107.60273 * 183.30772 * 10 9 7 12 12 C 1.54421 * 102.03225 * 20.47800 * 11 10 9 13 13 H 1.09004 * 110.00280 * 81.70133 * 12 11 10 14 14 C 1.48209 * 125.76962 * 179.97438 * 9 7 2 15 15 H 1.09003 * 112.30423 * 33.47604 * 14 9 7 16 16 C 1.53017 * 107.11720 * 270.88306 * 14 9 7 17 17 C 1.52730 * 110.79949 * 191.92648 * 16 14 9 18 18 C 1.54564 * 108.23118 * 64.06585 * 17 16 14 19 19 N 1.45118 * 111.60502 * 204.05301 * 12 11 10 20 20 C 1.34783 * 119.57366 * 248.63237 * 19 12 11 21 21 O 1.21661 * 120.00220 * 3.91685 * 20 19 12 22 22 C 1.46931 * 119.99483 * 184.19636 * 20 19 12 23 23 C 1.36358 * 126.83134 * 309.64620 * 22 20 19 24 24 N 1.35571 * 109.74948 * 180.02562 * 23 22 20 25 25 H 0.97004 * 124.71562 * 180.02562 * 24 23 22 26 26 C 1.37691 * 110.56131 * 0.02562 * 24 23 22 27 27 N 1.32675 * 132.94094 * 179.97438 * 26 24 23 28 28 C 1.31612 * 121.68866 * 179.97438 * 27 26 24 29 29 C 1.38580 * 121.54168 * 0.02562 * 28 27 26 30 30 C 1.38345 * 119.32816 * 359.97438 * 29 28 27 31 31 C 1.39359 * 118.05137 * 359.70324 * 30 29 28 32 32 H 0.97000 * 120.00487 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.88271 * 301.98766 * 10 9 7 34 34 H 1.08997 * 109.88787 * 63.15746 * 10 9 7 35 35 H 1.08998 * 110.46762 * 262.61406 * 11 10 9 36 36 H 1.08997 * 111.54735 * 138.81829 * 11 10 9 37 37 H 1.09000 * 109.20550 * 312.26522 * 16 14 9 38 38 H 1.08998 * 109.20937 * 71.58221 * 16 14 9 39 39 H 1.09010 * 109.64077 * 183.45576 * 17 16 14 40 40 H 1.08997 * 109.64601 * 303.87097 * 17 16 14 41 41 H 1.08999 * 109.24366 * 182.50271 * 18 17 16 42 42 H 1.09003 * 110.98596 * 61.19646 * 18 17 16 43 43 H 1.08003 * 125.11872 * 0.02582 * 23 22 20 44 44 H 1.07999 * 119.22698 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.33906 * 180.02562 * 29 28 27 46 46 H 1.07993 * 120.97437 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1381 -2.5359 -0.0007 11 6 -0.4572 -4.0552 0.0849 12 6 0.8584 -4.6288 0.6549 13 1 0.8813 -4.5042 1.7376 14 6 1.9339 -3.7395 -0.0016 15 1 2.8712 -3.7717 0.5539 16 6 2.1382 -4.1403 -1.4642 17 6 2.4841 -5.6236 -1.5768 18 6 1.2734 -6.4421 -1.0733 19 7 1.0227 -6.0296 0.3136 20 6 0.9492 -6.9635 1.2827 21 8 0.6758 -6.6372 2.4225 22 6 1.2054 -8.3747 0.9639 23 6 0.6458 -9.0990 -0.0469 24 7 1.1275 -10.3660 -0.0236 25 1 0.8747 -11.0646 -0.6473 26 6 2.0255 -10.5231 1.0083 27 7 2.7456 -11.5543 1.4306 28 6 3.5532 -11.4561 2.4651 29 6 3.6918 -10.2690 3.1665 30 6 2.9655 -9.1598 2.7715 31 6 2.1224 -9.2870 1.6692 32 1 -0.4851 0.8400 0.0004 33 1 -0.5616 -2.0329 0.8687 34 1 -0.5535 -2.1128 -0.9152 35 1 -0.6579 -4.4589 -0.9074 36 1 -1.2900 -4.2519 0.7600 37 1 1.2227 -3.9421 -2.0215 38 1 2.9502 -3.5494 -1.8879 39 1 2.6855 -5.8749 -2.6183 40 1 3.3634 -5.8419 -0.9708 41 1 1.5193 -7.5035 -1.1048 42 1 0.3905 -6.2479 -1.6824 43 1 -0.0728 -8.7202 -0.7586 44 1 4.1206 -12.3212 2.7751 45 1 4.3606 -10.2100 4.0125 46 1 3.0533 -8.2213 3.2986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049904736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:41 Heat of formation + Delta-G solvation = 57.237851 kcal Electronic energy + Delta-G solvation = -29934.282579 eV Core-core repulsion = 26017.570916 eV Total energy + Delta-G solvation = -3916.711663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.78155 -41.39695 -39.33714 -38.76036 -36.69905 -34.28666 -33.83538 -33.66862 -31.51864 -30.89506 -30.32597 -29.49950 -26.60653 -25.96045 -24.82785 -23.92212 -23.46066 -23.19758 -21.94987 -20.78807 -19.66784 -19.20325 -18.73624 -18.08353 -17.53335 -17.12201 -16.78141 -16.67244 -16.28295 -15.97987 -15.69599 -15.64467 -15.09344 -14.96733 -14.95263 -14.36314 -14.21230 -14.05848 -13.86951 -13.70727 -13.47975 -13.32966 -13.09596 -12.95656 -12.79158 -12.59241 -12.33564 -12.23457 -12.10342 -11.93317 -11.63884 -11.54287 -11.44270 -11.17294 -11.01278 -10.69881 -10.42432 -9.63092 -9.52802 -9.08801 -8.88492 -7.83375 -5.19215 -0.10641 0.31778 1.05615 1.45178 1.48624 1.54594 1.69876 1.77633 2.18036 2.50455 2.88520 3.33890 3.44624 3.51036 3.58160 3.74937 3.87206 3.92591 4.01992 4.05066 4.11638 4.16903 4.18379 4.27615 4.38097 4.46303 4.57352 4.59318 4.60488 4.68573 4.82367 4.85588 4.88562 4.99499 5.08509 5.16346 5.22155 5.33135 5.36531 5.37689 5.41314 5.57330 5.66208 5.67002 5.75550 5.83918 6.19112 6.29229 6.46348 6.97443 7.09898 7.19305 7.76006 8.41537 9.26263 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.002752 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.635331 B =10173.038681 C =10449.176828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.080 0.920 9 N -0.618 5.618 10 C 0.192 3.808 11 C -0.132 4.132 12 C 0.148 3.852 13 H 0.064 0.936 14 C 0.152 3.848 15 H 0.044 0.956 16 C -0.118 4.118 17 C -0.122 4.122 18 C 0.097 3.903 19 N -0.583 5.583 20 C 0.586 3.414 21 O -0.591 6.591 22 C -0.246 4.246 23 C 0.148 3.852 24 N -0.549 5.549 25 H 0.442 0.558 26 C 0.265 3.735 27 N -0.508 5.508 28 C 0.133 3.867 29 C -0.184 4.184 30 C -0.054 4.054 31 C -0.136 4.136 32 H 0.247 0.753 33 H 0.007 0.993 34 H 0.015 0.985 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.233 0.767 44 H 0.199 0.801 45 H 0.167 0.833 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 -26.572 -4.175 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.343 5.343 10 C 0.066 3.934 11 C -0.171 4.171 12 C 0.042 3.958 13 H 0.082 0.918 14 C 0.045 3.955 15 H 0.062 0.938 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.024 4.024 19 N -0.313 5.313 20 C 0.376 3.624 21 O -0.472 6.472 22 C -0.257 4.257 23 C 0.015 3.985 24 N -0.155 5.155 25 H 0.284 0.716 26 C 0.033 3.967 27 N -0.221 5.221 28 C -0.032 4.032 29 C -0.205 4.205 30 C -0.080 4.080 31 C -0.143 4.143 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.034 0.966 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.249 0.751 44 H 0.215 0.785 45 H 0.184 0.816 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.828 -27.029 -4.181 27.617 hybrid contribution 0.183 2.360 0.702 2.470 sum 4.011 -24.669 -3.479 25.234 Atomic orbital electron populations 1.70164 1.06210 1.25295 1.58297 1.25608 0.96583 1.00842 1.02745 0.85180 0.77151 0.79006 0.78157 1.20068 1.22076 1.20714 1.19343 0.90831 0.83535 1.42878 0.90249 1.44914 1.02054 1.00484 1.86799 1.21007 0.83790 0.90732 0.97825 1.23072 0.96548 0.95943 1.01526 1.21256 0.95624 0.80084 0.98863 0.91820 1.21520 0.94059 0.84428 0.95529 0.93804 1.21889 1.01106 0.96374 0.96376 1.22057 0.97656 0.93556 1.02819 1.22625 0.98845 1.01042 0.79904 1.47527 1.69737 1.04719 1.09300 1.17790 0.75546 0.85179 0.83896 1.90766 1.50566 1.82821 1.23004 1.19673 1.09149 0.93293 1.03600 1.22660 0.96994 0.82122 0.96723 1.41277 1.35443 1.12208 1.26601 0.71565 1.18473 0.95534 0.90500 0.92221 1.66596 1.08761 1.30150 1.16603 1.23102 0.93118 0.98415 0.88583 1.22259 1.02026 0.92984 1.03233 1.21186 0.93372 0.99820 0.93652 1.19685 1.01187 0.94407 0.99061 0.94418 0.97506 0.96646 0.89343 0.91360 0.92480 0.93618 0.87966 0.92297 0.86623 0.88537 0.75104 0.78471 0.81572 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.89 10.33 21.65 0.22 -57.66 16 2 C -0.06 -3.74 5.49 84.86 0.47 -3.27 16 3 Si 0.98 46.47 29.55 68.60 2.03 48.49 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.24 -13.42 10.29 84.03 0.86 -12.55 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -31.93 2.91 -665.22 -1.94 -33.86 16 10 C 0.19 9.65 5.19 87.11 0.45 10.10 16 11 C -0.13 -5.00 6.19 31.93 0.20 -4.81 16 12 C 0.15 5.61 3.03 46.15 0.14 5.75 16 13 H 0.06 2.90 6.98 -2.39 -0.02 2.88 16 14 C 0.15 6.27 3.60 45.09 0.16 6.43 16 15 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 16 C -0.12 -3.90 5.11 30.51 0.16 -3.74 16 17 C -0.12 -2.73 6.15 31.04 0.19 -2.54 16 18 C 0.10 1.85 5.59 86.84 0.49 2.33 16 19 N -0.58 -16.94 2.72 -796.44 -2.16 -19.10 16 20 C 0.59 18.59 7.55 86.52 0.65 19.24 16 21 O -0.59 -24.68 16.45 -4.22 -0.07 -24.75 16 22 C -0.25 -5.86 5.24 -19.05 -0.10 -5.96 16 23 C 0.15 1.95 9.43 83.68 0.79 2.74 16 24 N -0.55 -6.87 5.97 -191.79 -1.15 -8.01 16 25 H 0.44 2.34 8.96 -92.71 -0.83 1.51 16 26 C 0.26 5.42 8.41 133.76 1.12 6.54 16 27 N -0.51 -10.06 10.39 -192.80 -2.00 -12.07 16 28 C 0.13 2.07 11.14 84.81 0.95 3.02 16 29 C -0.18 -3.13 10.10 22.38 0.23 -2.90 16 30 C -0.05 -1.30 10.21 22.57 0.23 -1.07 16 31 C -0.14 -3.40 6.38 -20.06 -0.13 -3.53 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.01 0.39 7.30 -2.38 -0.02 0.37 16 34 H 0.02 0.84 7.60 -2.39 -0.02 0.83 16 35 H 0.09 2.83 6.91 -2.39 -0.02 2.81 16 36 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.06 1.97 7.21 -2.39 -0.02 1.95 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.12 1.53 4.59 -2.39 -0.01 1.51 16 42 H 0.10 1.47 7.54 -2.39 -0.02 1.46 16 43 H 0.23 0.93 7.56 -2.91 -0.02 0.91 16 44 H 0.20 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 46 H 0.12 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -82.82 364.42 1.98 -80.84 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.19 Total: 10.34 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.86 Total: 15.78 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -7.02 Total: -130.71 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.07 Total: -24.75 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -82.82 1.98 -80.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049904736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.082 kcal (2) G-P(sol) polarization free energy of solvation -82.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds