Wall clock time and date at job start Tue Mar 31 2020 23:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48502 * 109.47112 * 270.00099 * 3 2 1 5 5 H 1.48504 * 109.47445 * 29.99969 * 3 2 1 6 6 H 1.48497 * 109.47507 * 149.99941 * 3 2 1 7 7 C 1.38805 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.46929 * 125.38032 * 179.97438 * 9 7 2 11 11 C 1.54185 * 106.26214 * 162.12963 * 10 9 7 12 12 H 1.09004 * 109.27990 * 271.45682 * 11 10 9 13 13 C 1.50707 * 110.50412 * 151.09960 * 11 10 9 14 14 C 1.51328 * 113.54790 * 289.38786 * 13 11 10 15 15 C 1.51622 * 111.98097 * 304.61587 * 14 13 11 16 16 N 1.44509 * 112.65425 * 42.75473 * 15 14 13 17 17 C 1.34779 * 116.62876 * 154.59927 * 16 15 14 18 18 O 1.21795 * 120.00007 * 183.26078 * 17 16 15 19 19 C 1.41692 * 120.00383 * 3.26998 * 17 16 15 20 20 C 1.39191 * 125.87637 * 232.66258 * 19 17 16 21 21 C 1.38082 * 107.67797 * 180.02562 * 20 19 17 22 22 C 1.39505 * 107.57086 * 0.02562 * 21 20 19 23 23 C 1.40623 * 132.41283 * 180.02562 * 22 21 20 24 24 C 1.36298 * 119.15785 * 179.97438 * 23 22 21 25 25 C 1.39968 * 120.03808 * 359.97438 * 24 23 22 26 26 N 1.30651 * 120.99343 * 0.25708 * 25 24 23 27 27 N 1.37157 * 108.20481 * 359.97438 * 22 21 20 28 28 C 1.44093 * 126.73934 * 334.88953 * 16 15 14 29 29 H 1.08998 * 109.10916 * 253.58125 * 28 16 15 30 30 C 1.46817 * 125.37336 * 359.97438 * 9 7 2 31 31 H 0.97003 * 119.99168 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.09030 * 42.93271 * 10 9 7 33 33 H 1.08992 * 110.09570 * 281.33063 * 10 9 7 34 34 H 1.09009 * 108.66834 * 168.33965 * 13 11 10 35 35 H 1.09005 * 108.67210 * 50.44525 * 13 11 10 36 36 H 1.08995 * 108.97812 * 183.96721 * 14 13 11 37 37 H 1.09004 * 108.90888 * 65.21266 * 14 13 11 38 38 H 1.08998 * 108.85121 * 281.93495 * 15 14 13 39 39 H 1.09003 * 108.84799 * 163.56971 * 15 14 13 40 40 H 1.08004 * 126.15684 * 0.05246 * 20 19 17 41 41 H 1.08001 * 126.21714 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.42004 * 0.02562 * 23 22 21 43 43 H 1.07997 * 119.97624 * 179.97438 * 24 23 22 44 44 H 1.08006 * 119.50212 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.84236 * 300.42393 * 30 9 7 46 46 H 1.08997 * 109.84255 * 61.32871 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 1.9376 -3.7237 0.0017 11 6 0.8372 -4.7029 0.4572 12 1 0.8512 -4.7797 1.5445 13 6 1.0632 -6.0670 -0.1423 14 6 0.8040 -6.1231 -1.6322 15 6 -0.5896 -5.6407 -1.9844 16 7 -0.9695 -4.4542 -1.2522 17 6 -1.8958 -3.6610 -1.8261 18 8 -2.2177 -2.6152 -1.2912 19 6 -2.4954 -4.0438 -3.0515 20 6 -2.5702 -3.2637 -4.2018 21 6 -3.2292 -4.0004 -5.1659 22 6 -3.5580 -5.2334 -4.6022 23 6 -4.2234 -6.3623 -5.1123 24 6 -4.4026 -7.4476 -4.3075 25 6 -3.9266 -7.4301 -2.9913 26 7 -3.3119 -6.3815 -2.5122 27 7 -3.1035 -5.2478 -3.3082 28 6 -0.4562 -4.0282 0.0250 29 1 -1.2147 -4.1984 0.7891 30 6 -0.1362 -2.5255 0.0028 31 1 -0.4849 0.8401 0.0004 32 1 2.7755 -3.7516 0.6983 33 1 2.2757 -3.9809 -1.0020 34 1 0.4040 -6.7797 0.3535 35 1 2.0956 -6.3633 0.0437 36 1 0.9201 -7.1516 -1.9737 37 1 1.5356 -5.4959 -2.1418 38 1 -1.3033 -6.4344 -1.7633 39 1 -0.6277 -5.4231 -3.0517 40 1 -2.1823 -2.2626 -4.3191 41 1 -3.4501 -3.6803 -6.1735 42 1 -4.5871 -6.3696 -6.1292 43 1 -4.9122 -8.3215 -4.6855 44 1 -4.0738 -8.2946 -2.3610 45 1 -0.5525 -2.0429 0.8870 46 1 -0.5513 -2.0708 -0.8966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050158632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:34 Heat of formation + Delta-G solvation = 135.946727 kcal Electronic energy + Delta-G solvation = -30996.250728 eV Core-core repulsion = 27082.952138 eV Total energy + Delta-G solvation = -3913.298590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.10995 -40.24870 -37.91265 -36.95129 -35.36376 -33.54257 -32.95608 -31.97276 -30.51966 -29.71374 -28.95431 -26.99512 -25.54357 -24.86959 -24.00498 -23.04474 -22.11623 -21.37827 -20.51277 -19.81729 -18.04099 -17.70989 -17.31919 -16.63205 -16.14227 -16.01121 -15.69289 -15.48443 -14.99727 -14.43863 -14.29023 -14.04019 -13.91639 -13.66822 -13.46083 -13.34413 -12.91520 -12.68426 -12.43530 -12.32365 -12.19388 -12.03677 -11.61854 -11.28782 -11.03697 -10.89786 -10.84246 -10.82235 -10.67502 -10.42235 -10.25228 -10.18313 -9.93486 -9.84459 -9.53099 -9.03507 -8.86797 -8.34484 -7.84901 -7.72693 -6.57515 -5.47712 -2.84437 0.31825 1.03183 1.78510 2.48400 3.12573 3.31238 3.50769 3.54839 3.57758 3.63712 4.18176 4.32220 4.45471 4.64587 4.72008 4.86761 5.00014 5.03587 5.15563 5.20660 5.28731 5.33801 5.50365 5.52257 5.62627 5.67521 5.74869 5.79089 5.88547 5.92042 5.98380 6.05333 6.10084 6.14194 6.17142 6.29961 6.32084 6.54019 6.59608 6.68411 6.74584 6.80525 6.89067 7.22093 7.51389 7.70398 7.86899 7.95998 8.25255 8.50600 8.74510 9.41686 10.02797 10.67960 11.60205 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.003971 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.084357 B = 7048.755110 C = 8265.626736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.143 3.857 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.099 4.099 14 C -0.126 4.126 15 C 0.118 3.882 16 N -0.573 5.573 17 C 0.566 3.434 18 O -0.485 6.485 19 C 0.008 3.992 20 C -0.101 4.101 21 C -0.163 4.163 22 C -0.018 4.018 23 C -0.004 4.004 24 C -0.213 4.213 25 C 0.128 3.872 26 N -0.264 5.264 27 N -0.235 5.235 28 C 0.131 3.869 29 H 0.056 0.944 30 C 0.163 3.837 31 H 0.252 0.748 32 H 0.031 0.969 33 H 0.014 0.986 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.192 0.808 45 H 0.051 0.949 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 -20.187 -10.636 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.121 4.121 12 H 0.098 0.902 13 C -0.138 4.138 14 C -0.164 4.164 15 C -0.006 4.006 16 N -0.306 5.306 17 C 0.352 3.648 18 O -0.358 6.358 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.189 4.189 22 C -0.128 4.128 23 C -0.031 4.031 24 C -0.236 4.236 25 C -0.064 4.064 26 N -0.073 5.073 27 N 0.001 4.999 28 C 0.027 3.973 29 H 0.074 0.926 30 C 0.039 3.961 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.181 0.819 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.208 0.792 45 H 0.069 0.931 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.922 -19.291 -9.138 22.768 hybrid contribution 0.089 0.432 -0.807 0.919 sum -7.833 -18.859 -9.945 22.713 Atomic orbital electron populations 1.70033 1.04456 1.24753 1.55958 1.24838 0.95672 0.97432 1.02329 0.86207 0.78524 0.84081 0.77438 1.21755 1.21757 1.20884 1.18958 0.90205 0.82476 1.44672 0.90766 1.44416 1.01951 0.99733 1.87301 1.21364 0.93797 0.86159 0.97071 1.21306 0.95911 0.94501 1.00409 0.90182 1.20468 1.01602 0.96671 0.95022 1.21111 0.96688 1.01061 0.97514 1.20847 0.96611 0.87821 0.95315 1.46576 1.40144 1.23077 1.20826 1.15949 0.81068 0.84516 0.83291 1.91009 1.61034 1.21953 1.61794 1.19638 1.08949 0.83647 0.98809 1.21359 1.00938 0.99900 0.90338 1.21006 1.05337 0.92050 1.00529 1.19318 1.08331 0.98678 0.86461 1.20873 0.92126 0.89711 1.00397 1.21329 1.06609 1.00871 0.94777 1.23987 0.91359 0.95571 0.95520 1.75841 1.18525 0.93693 1.19233 1.45695 1.36859 1.09244 1.08079 1.21127 0.94476 0.99095 0.82567 0.92555 1.21875 0.83434 0.86600 1.04237 0.93780 0.95073 0.96859 0.92556 0.91575 0.91204 0.91279 0.91668 0.92243 0.81871 0.82827 0.83108 0.83661 0.79180 0.93102 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 10.26 55.49 0.57 -28.04 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.94 10.25 -15.06 -0.15 -7.10 16 8 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -16.65 3.39 -171.51 -0.58 -17.24 16 10 C 0.14 3.14 6.65 -3.19 -0.02 3.12 16 11 C -0.10 -1.88 3.05 -91.58 -0.28 -2.16 16 12 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.10 -1.42 5.17 -28.72 -0.15 -1.57 16 14 C -0.13 -1.75 5.83 -28.27 -0.16 -1.92 16 15 C 0.12 1.85 4.94 -5.80 -0.03 1.82 16 16 N -0.57 -11.21 3.09 -173.71 -0.54 -11.74 16 17 C 0.57 12.05 6.71 -14.94 -0.10 11.95 16 18 O -0.48 -12.44 13.91 5.10 0.07 -12.37 16 19 C 0.01 0.14 4.87 -83.74 -0.41 -0.27 16 20 C -0.10 -1.58 10.78 -39.28 -0.42 -2.01 16 21 C -0.16 -1.99 10.92 -39.17 -0.43 -2.42 16 22 C -0.02 -0.22 6.80 -84.11 -0.57 -0.80 16 23 C 0.00 -0.04 10.12 -39.38 -0.40 -0.43 16 24 C -0.21 -1.44 10.04 -39.63 -0.40 -1.83 16 25 C 0.13 1.06 11.29 -17.41 -0.20 0.87 16 26 N -0.26 -3.45 9.31 30.62 0.28 -3.16 16 27 N -0.23 -3.49 3.34 -8.28 -0.03 -3.52 16 28 C 0.13 2.81 3.16 -69.30 -0.22 2.59 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 C 0.16 4.40 4.12 -3.53 -0.01 4.38 16 31 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.01 0.30 6.69 -51.93 -0.35 -0.04 16 34 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.07 0.85 8.11 -51.93 -0.42 0.42 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.06 6.99 -51.93 -0.36 0.69 16 38 H 0.07 0.96 5.94 -51.93 -0.31 0.65 16 39 H 0.06 0.96 6.57 -51.93 -0.34 0.61 16 40 H 0.16 2.50 8.06 -52.48 -0.42 2.08 16 41 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.19 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.05 1.55 7.37 -51.93 -0.38 1.17 16 46 H 0.09 2.71 4.39 -51.98 -0.23 2.49 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -37.63 357.56 -10.07 -47.71 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.17 Total: 0.79 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -4.05 Total: 3.96 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.29 Total: -63.70 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.37 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.63 -10.07 -47.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050158632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.654 kcal (2) G-P(sol) polarization free energy of solvation -37.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds