Wall clock time and date at job start Tue Mar 31 2020 23:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48502 * 109.47112 * 270.00099 * 3 2 1 5 5 H 1.48504 * 109.47445 * 29.99969 * 3 2 1 6 6 H 1.48497 * 109.47507 * 149.99941 * 3 2 1 7 7 C 1.38805 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.46929 * 125.38032 * 179.97438 * 9 7 2 11 11 C 1.54185 * 106.26214 * 162.12963 * 10 9 7 12 12 H 1.09004 * 109.27990 * 271.45682 * 11 10 9 13 13 C 1.50707 * 110.50412 * 151.09960 * 11 10 9 14 14 C 1.51328 * 113.54790 * 289.38786 * 13 11 10 15 15 C 1.51622 * 111.98097 * 304.61587 * 14 13 11 16 16 N 1.44509 * 112.65425 * 42.75473 * 15 14 13 17 17 C 1.34779 * 116.62876 * 154.59927 * 16 15 14 18 18 O 1.21795 * 120.00007 * 183.26078 * 17 16 15 19 19 C 1.41692 * 120.00383 * 3.26998 * 17 16 15 20 20 C 1.39191 * 125.87637 * 232.66258 * 19 17 16 21 21 C 1.38082 * 107.67797 * 180.02562 * 20 19 17 22 22 C 1.39505 * 107.57086 * 0.02562 * 21 20 19 23 23 C 1.40623 * 132.41283 * 180.02562 * 22 21 20 24 24 C 1.36298 * 119.15785 * 179.97438 * 23 22 21 25 25 C 1.39968 * 120.03808 * 359.97438 * 24 23 22 26 26 N 1.30651 * 120.99343 * 0.25708 * 25 24 23 27 27 N 1.37157 * 108.20481 * 359.97438 * 22 21 20 28 28 C 1.44093 * 126.73934 * 334.88953 * 16 15 14 29 29 H 1.08998 * 109.10916 * 253.58125 * 28 16 15 30 30 C 1.46817 * 125.37336 * 359.97438 * 9 7 2 31 31 H 0.97003 * 119.99168 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.09030 * 42.93271 * 10 9 7 33 33 H 1.08992 * 110.09570 * 281.33063 * 10 9 7 34 34 H 1.09009 * 108.66834 * 168.33965 * 13 11 10 35 35 H 1.09005 * 108.67210 * 50.44525 * 13 11 10 36 36 H 1.08995 * 108.97812 * 183.96721 * 14 13 11 37 37 H 1.09004 * 108.90888 * 65.21266 * 14 13 11 38 38 H 1.08998 * 108.85121 * 281.93495 * 15 14 13 39 39 H 1.09003 * 108.84799 * 163.56971 * 15 14 13 40 40 H 1.08004 * 126.15684 * 0.05246 * 20 19 17 41 41 H 1.08001 * 126.21714 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.42004 * 0.02562 * 23 22 21 43 43 H 1.07997 * 119.97624 * 179.97438 * 24 23 22 44 44 H 1.08006 * 119.50212 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.84236 * 300.42393 * 30 9 7 46 46 H 1.08997 * 109.84255 * 61.32871 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 1.9376 -3.7237 0.0017 11 6 0.8372 -4.7029 0.4572 12 1 0.8512 -4.7797 1.5445 13 6 1.0632 -6.0670 -0.1423 14 6 0.8040 -6.1231 -1.6322 15 6 -0.5896 -5.6407 -1.9844 16 7 -0.9695 -4.4542 -1.2522 17 6 -1.8958 -3.6610 -1.8261 18 8 -2.2177 -2.6152 -1.2912 19 6 -2.4954 -4.0438 -3.0515 20 6 -2.5702 -3.2637 -4.2018 21 6 -3.2292 -4.0004 -5.1659 22 6 -3.5580 -5.2334 -4.6022 23 6 -4.2234 -6.3623 -5.1123 24 6 -4.4026 -7.4476 -4.3075 25 6 -3.9266 -7.4301 -2.9913 26 7 -3.3119 -6.3815 -2.5122 27 7 -3.1035 -5.2478 -3.3082 28 6 -0.4562 -4.0282 0.0250 29 1 -1.2147 -4.1984 0.7891 30 6 -0.1362 -2.5255 0.0028 31 1 -0.4849 0.8401 0.0004 32 1 2.7755 -3.7516 0.6983 33 1 2.2757 -3.9809 -1.0020 34 1 0.4040 -6.7797 0.3535 35 1 2.0956 -6.3633 0.0437 36 1 0.9201 -7.1516 -1.9737 37 1 1.5356 -5.4959 -2.1418 38 1 -1.3033 -6.4344 -1.7633 39 1 -0.6277 -5.4231 -3.0517 40 1 -2.1823 -2.2626 -4.3191 41 1 -3.4501 -3.6803 -6.1735 42 1 -4.5871 -6.3696 -6.1292 43 1 -4.9122 -8.3215 -4.6855 44 1 -4.0738 -8.2946 -2.3610 45 1 -0.5525 -2.0429 0.8870 46 1 -0.5513 -2.0708 -0.8966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050158632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:33 Heat of formation + Delta-G solvation = 109.715157 kcal Electronic energy + Delta-G solvation = -30997.388214 eV Core-core repulsion = 27082.952138 eV Total energy + Delta-G solvation = -3914.436076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.15834 -41.72981 -39.33360 -38.01727 -37.10710 -34.85007 -34.12080 -33.82461 -31.65446 -31.39270 -30.17058 -28.58964 -27.38027 -26.07146 -25.36659 -24.16725 -23.51955 -22.75821 -22.05938 -21.10516 -19.36123 -19.33136 -18.56626 -18.12128 -17.42686 -17.23934 -16.95014 -16.66454 -16.43983 -15.99153 -15.79562 -15.68907 -15.33892 -15.11728 -14.50919 -14.40922 -14.15131 -14.11964 -13.91350 -13.76858 -13.51452 -13.11568 -13.03497 -13.02739 -12.93963 -12.67855 -12.55376 -12.12250 -12.09752 -11.82478 -11.73712 -11.63014 -11.51845 -11.39980 -11.34608 -10.84609 -10.47178 -9.95232 -9.47704 -8.84136 -8.69085 -7.76919 -5.18090 -0.37367 0.09526 0.80598 1.39394 1.40648 1.45078 1.53843 1.86648 2.21795 2.39753 2.49595 3.27390 3.35674 3.54891 3.65502 3.67211 3.77914 3.84227 3.88640 3.94923 3.99809 4.02306 4.05752 4.35370 4.44161 4.53172 4.55873 4.64816 4.65289 4.77122 4.78163 4.83094 4.86448 4.91322 5.05863 5.07878 5.12526 5.15617 5.30108 5.31201 5.37409 5.44982 5.50179 5.69000 5.70067 5.80819 6.04604 6.25014 6.40234 6.69246 7.08231 7.18840 7.81874 8.45384 9.28997 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.003971 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.084357 B = 7048.755110 C = 8265.626736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.250 4.250 8 H 0.085 0.915 9 N -0.630 5.630 10 C 0.138 3.862 11 C -0.088 4.088 12 H 0.089 0.911 13 C -0.094 4.094 14 C -0.123 4.123 15 C 0.119 3.881 16 N -0.571 5.571 17 C 0.562 3.438 18 O -0.554 6.554 19 C -0.051 4.051 20 C -0.120 4.120 21 C -0.167 4.167 22 C -0.006 4.006 23 C -0.017 4.017 24 C -0.183 4.183 25 C 0.139 3.861 26 N -0.315 5.315 27 N -0.238 5.238 28 C 0.141 3.859 29 H 0.047 0.953 30 C 0.178 3.822 31 H 0.241 0.759 32 H 0.043 0.957 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.144 0.856 41 H 0.188 0.812 42 H 0.193 0.807 43 H 0.197 0.803 44 H 0.236 0.764 45 H -0.005 1.005 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.233 -25.509 -12.687 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.379 4.379 8 H 0.103 0.897 9 N -0.357 5.357 10 C 0.013 3.987 11 C -0.108 4.108 12 H 0.107 0.893 13 C -0.132 4.132 14 C -0.160 4.160 15 C -0.003 4.003 16 N -0.303 5.303 17 C 0.351 3.649 18 O -0.432 6.432 19 C -0.168 4.168 20 C -0.145 4.145 21 C -0.192 4.192 22 C -0.118 4.118 23 C -0.043 4.043 24 C -0.205 4.205 25 C -0.052 4.052 26 N -0.125 5.125 27 N 0.000 5.000 28 C 0.036 3.964 29 H 0.065 0.935 30 C 0.053 3.947 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.162 0.838 41 H 0.205 0.795 42 H 0.210 0.790 43 H 0.214 0.786 44 H 0.252 0.748 45 H 0.013 0.987 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.931 -24.688 -11.198 28.245 hybrid contribution -0.055 1.809 -0.258 1.828 sum -7.986 -22.880 -11.456 26.805 Atomic orbital electron populations 1.70370 1.06398 1.24771 1.57412 1.25817 0.96534 1.01405 1.02568 0.85050 0.77674 0.78943 0.77473 1.21281 1.22252 1.18744 1.19444 0.90918 0.83735 1.43778 0.89747 1.44751 1.02396 1.01419 1.87162 1.21595 0.95106 0.84455 0.97593 1.21324 0.92137 0.96069 1.01262 0.89267 1.20488 1.03962 0.93723 0.95037 1.21182 0.94503 1.03113 0.97240 1.21055 0.98420 0.86379 0.94457 1.46646 1.39350 1.24096 1.20183 1.16540 0.80704 0.83606 0.84065 1.90952 1.63436 1.24914 1.63913 1.18985 1.13406 0.86400 0.97982 1.21374 1.02118 0.99560 0.91492 1.21305 1.04810 0.91847 1.01216 1.20033 1.06725 0.99694 0.85350 1.21442 0.91829 0.88347 1.02662 1.21972 1.03690 1.01584 0.93294 1.24993 0.88273 0.94894 0.97004 1.75885 1.21723 0.94400 1.20451 1.45623 1.36374 1.08947 1.09082 1.20752 0.95933 0.95894 0.83812 0.93513 1.21389 0.83204 0.90171 0.99966 0.94926 0.93910 0.96357 0.89957 0.88825 0.86758 0.93071 0.89854 0.92935 0.83816 0.79482 0.78975 0.78595 0.74766 0.98677 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -64.60 10.26 21.65 0.22 -64.37 16 2 C -0.07 -4.42 5.48 84.86 0.47 -3.95 16 3 Si 0.98 50.12 29.55 68.60 2.03 52.15 16 4 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 5 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 6 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.25 -15.47 10.25 84.03 0.86 -14.61 16 8 H 0.08 4.91 7.83 -2.91 -0.02 4.88 16 9 N -0.63 -36.62 3.39 -696.55 -2.36 -38.98 16 10 C 0.14 6.13 6.65 86.70 0.58 6.71 16 11 C -0.09 -3.25 3.05 -11.42 -0.03 -3.29 16 12 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 13 C -0.09 -2.39 5.17 29.30 0.15 -2.24 16 14 C -0.12 -3.08 5.83 29.60 0.17 -2.91 16 15 C 0.12 3.68 4.94 86.30 0.43 4.10 16 16 N -0.57 -23.68 3.09 -821.68 -2.54 -26.23 16 17 C 0.56 26.48 6.71 85.09 0.57 27.05 16 18 O -0.55 -32.32 13.91 -4.65 -0.06 -32.38 16 19 C -0.05 -1.95 4.87 39.37 0.19 -1.76 16 20 C -0.12 -4.16 10.78 22.46 0.24 -3.92 16 21 C -0.17 -4.07 10.92 22.54 0.25 -3.82 16 22 C -0.01 -0.13 6.80 39.20 0.27 0.13 16 23 C -0.02 -0.19 10.12 22.40 0.23 0.04 16 24 C -0.18 -1.27 10.04 22.24 0.22 -1.05 16 25 C 0.14 1.61 11.29 85.29 0.96 2.57 16 26 N -0.31 -7.57 9.31 -57.05 -0.53 -8.10 16 27 N -0.24 -7.04 3.34 -180.11 -0.60 -7.64 16 28 C 0.14 6.44 3.16 45.38 0.14 6.58 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 C 0.18 10.54 4.12 86.54 0.36 10.90 16 31 H 0.24 16.24 8.31 -92.71 -0.77 15.47 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.02 0.82 6.69 -2.39 -0.02 0.80 16 34 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.09 1.96 8.11 -2.38 -0.02 1.94 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.48 6.99 -2.38 -0.02 1.46 16 38 H 0.08 2.29 5.94 -2.39 -0.01 2.28 16 39 H 0.05 1.71 6.57 -2.39 -0.02 1.70 16 40 H 0.14 5.22 8.06 -2.91 -0.02 5.19 16 41 H 0.19 3.01 8.06 -2.91 -0.02 2.98 16 42 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 43 H 0.20 -0.48 8.06 -2.91 -0.02 -0.50 16 44 H 0.24 0.46 8.06 -2.91 -0.02 0.43 16 45 H 0.00 -0.34 7.37 -2.39 -0.02 -0.36 16 46 H 0.05 3.58 4.39 -3.25 -0.01 3.57 16 Total: -1.00 -96.98 357.56 3.20 -93.78 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.00 Total: 11.23 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 6.05 Total: 20.54 kcal Atomic # 7 Polarization: -139.51 SS G_CDS: -5.81 Total: -145.32 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.06 Total: -32.38 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.03 Total: 52.15 kcal Total: -96.98 3.20 -93.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050158632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.491 kcal (2) G-P(sol) polarization free energy of solvation -96.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds