Wall clock time and date at job start Tue Mar 31 2020 23:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00351 * 2 1 4 4 H 1.48507 * 109.47538 * 270.00371 * 3 2 1 5 5 H 1.48505 * 109.47087 * 30.00197 * 3 2 1 6 6 H 1.48499 * 109.47123 * 150.00197 * 3 2 1 7 7 C 1.38809 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99784 * 160.14893 * 7 2 1 9 9 N 1.36931 * 120.00321 * 340.41504 * 7 2 1 10 10 C 1.43436 * 120.53974 * 156.51259 * 9 7 2 11 11 C 1.54407 * 116.38625 * 271.73092 * 10 9 7 12 12 C 1.54842 * 110.07233 * 318.64977 * 11 10 9 13 13 C 1.50133 * 110.81783 * 321.07652 * 12 11 10 14 14 H 1.09007 * 110.24453 * 338.70977 * 13 12 11 15 15 N 1.46500 * 110.25078 * 216.65844 * 13 12 11 16 16 C 1.34775 * 120.00110 * 159.01772 * 15 13 12 17 17 O 1.21549 * 119.99565 * 359.97438 * 16 15 13 18 18 C 1.47886 * 120.00188 * 179.97438 * 16 15 13 19 19 N 1.32143 * 120.03196 * 0.02562 * 18 16 15 20 20 C 1.31975 * 122.76806 * 179.97438 * 19 18 16 21 21 C 1.37779 * 121.73383 * 0.02562 * 20 19 18 22 22 C 1.40389 * 118.72366 * 359.97438 * 21 20 19 23 23 C 1.40644 * 122.27430 * 180.02562 * 22 21 20 24 24 C 1.36654 * 117.94782 * 179.25442 * 23 22 21 25 25 C 1.39397 * 119.92171 * 0.70619 * 24 23 22 26 26 N 1.31212 * 121.85611 * 359.51872 * 25 24 23 27 27 C 1.33258 * 121.22268 * 359.97438 * 26 25 24 28 28 C 1.52524 * 105.41428 * 97.67594 * 13 12 11 29 29 C 1.46234 * 114.28320 * 270.59513 * 28 13 12 30 30 H 0.97002 * 119.99408 * 359.97438 * 1 2 3 31 31 H 1.09000 * 108.15883 * 33.30578 * 10 9 7 32 32 H 1.08995 * 108.16213 * 149.87530 * 10 9 7 33 33 H 1.09003 * 109.44080 * 198.43794 * 11 10 9 34 34 H 1.08998 * 109.24094 * 78.73351 * 11 10 9 35 35 H 1.09002 * 109.21394 * 200.73215 * 12 11 10 36 36 H 1.09007 * 109.20910 * 81.41654 * 12 11 10 37 37 H 0.96994 * 119.99509 * 339.01313 * 15 13 12 38 38 H 1.08002 * 119.13817 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.64151 * 179.97438 * 21 20 19 40 40 H 1.07996 * 121.02730 * 359.95604 * 23 22 21 41 41 H 1.07994 * 120.03578 * 180.20713 * 24 23 22 42 42 H 1.08002 * 119.07319 * 179.49225 * 25 24 23 43 43 H 1.09000 * 108.51702 * 149.35321 * 28 13 12 44 44 H 1.08999 * 108.40071 * 31.75578 * 28 13 12 45 45 H 1.08995 * 109.84543 * 298.90547 * 29 28 13 46 46 H 1.09003 * 109.89990 * 177.94592 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0421 -1.2299 -0.3182 9 7 1.3848 -2.3539 0.3964 10 6 1.8619 -3.6321 -0.0463 11 6 1.2889 -4.1532 -1.3821 12 6 -0.2297 -3.8608 -1.4592 13 6 -0.8820 -4.0715 -0.1235 14 1 -0.2675 -4.7231 0.4979 15 7 -2.2184 -4.6461 -0.2969 16 6 -2.8083 -5.3002 0.7232 17 8 -2.2312 -5.4137 1.7870 18 6 -4.1576 -5.8797 0.5484 19 7 -4.7853 -5.7570 -0.6079 20 6 -5.9892 -6.2530 -0.8233 21 6 -6.6766 -6.9377 0.1550 22 6 -6.0723 -7.1078 1.4107 23 6 -6.7058 -7.7942 2.4622 24 6 -6.0300 -7.9212 3.6431 25 6 -4.7591 -7.3652 3.7802 26 7 -4.1750 -6.7216 2.7972 27 6 -4.7753 -6.5711 1.6171 28 6 -0.9808 -2.6843 0.5028 29 6 0.1847 -2.2989 1.2975 30 1 -0.4849 0.8401 0.0004 31 1 2.9457 -3.5740 -0.1468 32 1 1.6368 -4.3656 0.7278 33 1 1.4539 -5.2284 -1.4528 34 1 1.7952 -3.6549 -2.2089 35 1 -0.6867 -4.5274 -2.1906 36 1 -0.3805 -2.8279 -1.7729 37 1 -2.6787 -4.5557 -1.1459 38 1 -6.4481 -6.1179 -1.7916 39 1 -7.6613 -7.3359 -0.0404 40 1 -7.6912 -8.2178 2.3365 41 1 -6.4834 -8.4448 4.4717 42 1 -4.2407 -7.4667 4.7223 43 1 -1.8618 -2.6559 1.1439 44 1 -1.1118 -1.9546 -0.2962 45 1 0.3129 -2.9938 2.1274 46 1 0.0549 -1.2863 1.6795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052457224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:48 Heat of formation + Delta-G solvation = 73.709495 kcal Electronic energy + Delta-G solvation = -29549.037132 eV Core-core repulsion = 25633.039733 eV Total energy + Delta-G solvation = -3915.997399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.50527 -39.40108 -38.22785 -37.39031 -34.45130 -33.93587 -32.46073 -31.75642 -31.10802 -30.58626 -30.06651 -26.25975 -25.54466 -24.38255 -24.14946 -23.03197 -22.97919 -20.59129 -19.84931 -19.18737 -18.80711 -17.76928 -17.61975 -16.55870 -16.32588 -15.66363 -15.34779 -14.97083 -14.81562 -14.60085 -14.28384 -14.06445 -13.78441 -13.66642 -13.49794 -13.38293 -13.13718 -12.85704 -12.61436 -12.48081 -11.92206 -11.69567 -11.32556 -11.13997 -11.04573 -10.71356 -10.67360 -10.29864 -10.18722 -10.09424 -9.97359 -9.81626 -9.70927 -9.63858 -9.42158 -9.18556 -9.12931 -8.73592 -8.50894 -8.17945 -6.62224 -5.70398 -3.09010 -0.30085 0.40564 1.41645 2.54504 3.25632 3.31788 3.42959 3.50618 3.53658 3.91944 3.97530 4.04066 4.19488 4.33296 4.46598 4.50404 4.58435 4.82436 5.05102 5.12600 5.26428 5.35201 5.42601 5.50614 5.56788 5.73911 5.75195 5.79521 5.88067 6.00835 6.23556 6.27697 6.37793 6.42191 6.58483 6.67948 6.79362 6.96195 7.00170 7.03992 7.18882 7.24442 7.36385 7.43455 7.67426 7.71456 7.82699 8.02011 8.08415 8.51707 8.64881 9.27900 9.96108 10.50111 11.36618 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.002680 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.270929 B =10443.572212 C =10617.181718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.000 4.000 3 Si 0.898 3.102 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.139 4.139 12 C -0.112 4.112 13 C 0.147 3.853 14 H 0.084 0.916 15 N -0.701 5.701 16 C 0.558 3.442 17 O -0.494 6.494 18 C 0.151 3.849 19 N -0.446 5.446 20 C 0.077 3.923 21 C -0.129 4.129 22 C -0.084 4.084 23 C -0.066 4.066 24 C -0.155 4.155 25 C 0.129 3.871 26 N -0.416 5.416 27 C 0.104 3.896 28 C -0.131 4.131 29 C 0.170 3.830 30 H 0.251 0.749 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.402 0.598 38 H 0.166 0.834 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.029 0.971 44 H 0.101 0.899 45 H 0.010 0.990 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.931 -17.515 1.561 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.150 4.150 13 C 0.044 3.956 14 H 0.102 0.898 15 N -0.352 5.352 16 C 0.340 3.660 17 O -0.366 6.366 18 C -0.002 4.002 19 N -0.158 5.158 20 C -0.070 4.070 21 C -0.150 4.150 22 C -0.091 4.091 23 C -0.092 4.092 24 C -0.176 4.176 25 C -0.045 4.045 26 N -0.123 5.123 27 C -0.021 4.021 28 C -0.171 4.171 29 C 0.046 3.954 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.237 0.763 38 H 0.183 0.817 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.183 0.817 43 H 0.048 0.952 44 H 0.120 0.880 45 H 0.028 0.972 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.369 -16.572 1.621 22.660 hybrid contribution -1.464 0.088 -0.112 1.471 sum -16.834 -16.483 1.509 23.609 Atomic orbital electron populations 1.69979 1.05047 1.25064 1.54450 1.24882 0.95210 0.98114 1.01530 0.86359 0.79239 0.84050 0.77479 1.21715 1.21749 1.20708 1.19200 0.93613 0.85386 1.39274 0.91575 1.44293 1.33736 1.00880 1.52032 1.20336 0.96427 0.88309 0.92466 1.22752 0.94985 0.98430 1.01917 1.21699 0.95927 1.02493 0.94930 1.20533 0.80753 0.96157 0.98166 0.89798 1.46150 1.19229 1.54793 1.15007 1.17540 0.83780 0.79771 0.84932 1.90867 1.62729 1.57508 1.25448 1.21780 0.95561 0.94890 0.87964 1.67396 1.09901 1.16874 1.21662 1.22599 0.90111 0.94483 0.99764 1.22355 1.01054 0.99152 0.92430 1.18982 0.95091 0.99240 0.95819 1.21404 0.99819 0.95952 0.92074 1.22138 0.96437 1.00367 0.98671 1.23368 0.91944 0.91158 0.97998 1.68347 1.33640 1.11743 0.98610 1.19517 0.91323 0.97690 0.93526 1.21325 0.98838 0.94586 1.02352 1.20092 0.84861 1.00499 0.89954 0.93867 0.94987 0.95249 0.93670 0.92672 0.93997 0.90055 0.76296 0.81698 0.83723 0.83811 0.83946 0.81713 0.95204 0.88036 0.97172 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 9.43 55.49 0.52 -24.67 16 2 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 3 Si 0.90 21.79 29.60 -169.99 -5.03 16.76 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.69 9.62 -15.06 -0.14 -6.83 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -14.82 2.61 -175.40 -0.46 -15.28 16 10 C 0.15 3.34 5.13 -4.92 -0.03 3.32 16 11 C -0.14 -2.67 6.40 -25.02 -0.16 -2.83 16 12 C -0.11 -2.16 5.30 -27.19 -0.14 -2.31 16 13 C 0.15 2.94 2.17 -69.60 -0.15 2.79 16 14 H 0.08 1.82 5.83 -51.92 -0.30 1.51 16 15 N -0.70 -12.50 5.00 -56.37 -0.28 -12.78 16 16 C 0.56 10.43 7.66 -12.31 -0.09 10.34 16 17 O -0.49 -10.71 14.93 5.32 0.08 -10.63 16 18 C 0.15 2.40 6.81 -82.55 -0.56 1.84 16 19 N -0.45 -5.97 9.48 -9.55 -0.09 -6.06 16 20 C 0.08 0.74 11.12 -17.66 -0.20 0.54 16 21 C -0.13 -1.07 9.93 -38.94 -0.39 -1.46 16 22 C -0.08 -0.90 5.75 -106.79 -0.61 -1.51 16 23 C -0.07 -0.50 9.95 -39.25 -0.39 -0.89 16 24 C -0.15 -1.13 10.03 -39.72 -0.40 -1.53 16 25 C 0.13 1.35 11.14 -17.38 -0.19 1.15 16 26 N -0.42 -6.33 8.49 -10.74 -0.09 -6.42 16 27 C 0.10 1.53 6.61 -84.62 -0.56 0.97 16 28 C -0.13 -3.03 4.73 -30.19 -0.14 -3.17 16 29 C 0.17 4.23 5.25 -5.20 -0.03 4.20 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.03 0.68 7.99 -51.93 -0.41 0.27 16 32 H 0.03 0.62 6.89 -51.93 -0.36 0.26 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.70 7.81 -51.93 -0.41 0.29 16 36 H 0.08 1.80 6.82 -51.93 -0.35 1.45 16 37 H 0.40 6.40 7.79 -40.82 -0.32 6.08 16 38 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.03 0.70 7.90 -51.93 -0.41 0.29 16 44 H 0.10 2.59 5.29 -51.93 -0.27 2.31 16 45 H 0.01 0.25 8.13 -51.93 -0.42 -0.17 16 46 H 0.09 2.48 6.05 -51.93 -0.31 2.17 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -33.32 366.66 -10.19 -43.50 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.08 Total: 5.51 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -4.28 Total: 4.55 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.40 Total: -65.21 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.32 -10.19 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052457224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.211 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds