Wall clock time and date at job start Tue Mar 31 2020 23:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00351 * 2 1 4 4 H 1.48507 * 109.47538 * 270.00371 * 3 2 1 5 5 H 1.48505 * 109.47087 * 30.00197 * 3 2 1 6 6 H 1.48499 * 109.47123 * 150.00197 * 3 2 1 7 7 C 1.38809 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99784 * 160.14893 * 7 2 1 9 9 N 1.36931 * 120.00321 * 340.41504 * 7 2 1 10 10 C 1.43436 * 120.53974 * 156.51259 * 9 7 2 11 11 C 1.54407 * 116.38625 * 271.73092 * 10 9 7 12 12 C 1.54842 * 110.07233 * 318.64977 * 11 10 9 13 13 C 1.50133 * 110.81783 * 321.07652 * 12 11 10 14 14 H 1.09007 * 110.24453 * 338.70977 * 13 12 11 15 15 N 1.46500 * 110.25078 * 216.65844 * 13 12 11 16 16 C 1.34775 * 120.00110 * 159.01772 * 15 13 12 17 17 O 1.21549 * 119.99565 * 359.97438 * 16 15 13 18 18 C 1.47886 * 120.00188 * 179.97438 * 16 15 13 19 19 N 1.32143 * 120.03196 * 0.02562 * 18 16 15 20 20 C 1.31975 * 122.76806 * 179.97438 * 19 18 16 21 21 C 1.37779 * 121.73383 * 0.02562 * 20 19 18 22 22 C 1.40389 * 118.72366 * 359.97438 * 21 20 19 23 23 C 1.40644 * 122.27430 * 180.02562 * 22 21 20 24 24 C 1.36654 * 117.94782 * 179.25442 * 23 22 21 25 25 C 1.39397 * 119.92171 * 0.70619 * 24 23 22 26 26 N 1.31212 * 121.85611 * 359.51872 * 25 24 23 27 27 C 1.33258 * 121.22268 * 359.97438 * 26 25 24 28 28 C 1.52524 * 105.41428 * 97.67594 * 13 12 11 29 29 C 1.46234 * 114.28320 * 270.59513 * 28 13 12 30 30 H 0.97002 * 119.99408 * 359.97438 * 1 2 3 31 31 H 1.09000 * 108.15883 * 33.30578 * 10 9 7 32 32 H 1.08995 * 108.16213 * 149.87530 * 10 9 7 33 33 H 1.09003 * 109.44080 * 198.43794 * 11 10 9 34 34 H 1.08998 * 109.24094 * 78.73351 * 11 10 9 35 35 H 1.09002 * 109.21394 * 200.73215 * 12 11 10 36 36 H 1.09007 * 109.20910 * 81.41654 * 12 11 10 37 37 H 0.96994 * 119.99509 * 339.01313 * 15 13 12 38 38 H 1.08002 * 119.13817 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.64151 * 179.97438 * 21 20 19 40 40 H 1.07996 * 121.02730 * 359.95604 * 23 22 21 41 41 H 1.07994 * 120.03578 * 180.20713 * 24 23 22 42 42 H 1.08002 * 119.07319 * 179.49225 * 25 24 23 43 43 H 1.09000 * 108.51702 * 149.35321 * 28 13 12 44 44 H 1.08999 * 108.40071 * 31.75578 * 28 13 12 45 45 H 1.08995 * 109.84543 * 298.90547 * 29 28 13 46 46 H 1.09003 * 109.89990 * 177.94592 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0421 -1.2299 -0.3182 9 7 1.3848 -2.3539 0.3964 10 6 1.8619 -3.6321 -0.0463 11 6 1.2889 -4.1532 -1.3821 12 6 -0.2297 -3.8608 -1.4592 13 6 -0.8820 -4.0715 -0.1235 14 1 -0.2675 -4.7231 0.4979 15 7 -2.2184 -4.6461 -0.2969 16 6 -2.8083 -5.3002 0.7232 17 8 -2.2312 -5.4137 1.7870 18 6 -4.1576 -5.8797 0.5484 19 7 -4.7853 -5.7570 -0.6079 20 6 -5.9892 -6.2530 -0.8233 21 6 -6.6766 -6.9377 0.1550 22 6 -6.0723 -7.1078 1.4107 23 6 -6.7058 -7.7942 2.4622 24 6 -6.0300 -7.9212 3.6431 25 6 -4.7591 -7.3652 3.7802 26 7 -4.1750 -6.7216 2.7972 27 6 -4.7753 -6.5711 1.6171 28 6 -0.9808 -2.6843 0.5028 29 6 0.1847 -2.2989 1.2975 30 1 -0.4849 0.8401 0.0004 31 1 2.9457 -3.5740 -0.1468 32 1 1.6368 -4.3656 0.7278 33 1 1.4539 -5.2284 -1.4528 34 1 1.7952 -3.6549 -2.2089 35 1 -0.6867 -4.5274 -2.1906 36 1 -0.3805 -2.8279 -1.7729 37 1 -2.6787 -4.5557 -1.1459 38 1 -6.4481 -6.1179 -1.7916 39 1 -7.6613 -7.3359 -0.0404 40 1 -7.6912 -8.2178 2.3365 41 1 -6.4834 -8.4448 4.4717 42 1 -4.2407 -7.4667 4.7223 43 1 -1.8618 -2.6559 1.1439 44 1 -1.1118 -1.9546 -0.2962 45 1 0.3129 -2.9938 2.1274 46 1 0.0549 -1.2863 1.6795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052457224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:47 Heat of formation + Delta-G solvation = 51.230913 kcal Electronic energy + Delta-G solvation = -29550.011876 eV Core-core repulsion = 25633.039733 eV Total energy + Delta-G solvation = -3916.972143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.34272 -40.84569 -39.29304 -38.84823 -36.18447 -34.75191 -34.19911 -32.79339 -32.52089 -32.26119 -31.27194 -28.02054 -26.65354 -25.57297 -25.08263 -24.94322 -24.16869 -21.93418 -21.56351 -20.82402 -19.73918 -18.68356 -18.61222 -18.47614 -17.26798 -17.12807 -16.79606 -16.41202 -15.80043 -15.69906 -15.54170 -15.44410 -15.32985 -15.28933 -14.97903 -14.54149 -14.16163 -14.00230 -13.78642 -13.62835 -13.52378 -13.24097 -13.11984 -13.04507 -12.63151 -12.56633 -12.09093 -11.89203 -11.81674 -11.71758 -11.67223 -11.24420 -11.21398 -11.04451 -10.95476 -10.51129 -10.37358 -10.16105 -9.93679 -9.45549 -8.67016 -7.80463 -5.21944 -1.10690 -0.33018 0.65722 1.47887 1.50855 1.59632 1.66414 2.06084 2.20148 2.55788 3.05262 3.06801 3.22571 3.32697 3.43794 3.57900 3.66298 3.73886 3.94652 4.00533 4.09155 4.24301 4.25646 4.30744 4.48474 4.52492 4.58010 4.62888 4.65830 4.67378 4.85503 4.93855 4.95460 5.06319 5.10736 5.19689 5.22496 5.30006 5.35339 5.37177 5.51919 5.62817 5.63036 5.69101 5.71589 6.04281 6.42766 6.46884 6.69277 6.96406 7.17145 7.27133 7.90512 8.44080 9.24362 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.002680 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.270929 B =10443.572212 C =10617.181718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.045 4.045 3 Si 0.961 3.039 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.600 5.600 10 C 0.147 3.853 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.163 3.837 14 H 0.069 0.931 15 N -0.697 5.697 16 C 0.555 3.445 17 O -0.537 6.537 18 C 0.098 3.902 19 N -0.452 5.452 20 C 0.054 3.946 21 C -0.088 4.088 22 C -0.105 4.105 23 C -0.049 4.049 24 C -0.153 4.153 25 C 0.126 3.874 26 N -0.488 5.488 27 C 0.082 3.918 28 C -0.113 4.113 29 C 0.176 3.824 30 H 0.246 0.754 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.411 0.589 38 H 0.203 0.797 39 H 0.199 0.801 40 H 0.194 0.806 41 H 0.187 0.813 42 H 0.180 0.820 43 H 0.012 0.988 44 H 0.078 0.922 45 H 0.008 0.992 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.994 -20.085 0.781 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.241 4.241 3 Si 0.790 3.210 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.141 4.141 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.348 5.348 16 C 0.340 3.660 17 O -0.413 6.413 18 C -0.053 4.053 19 N -0.165 5.165 20 C -0.093 4.093 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.075 4.075 24 C -0.173 4.173 25 C -0.047 4.047 26 N -0.197 5.197 27 C -0.042 4.042 28 C -0.153 4.153 29 C 0.052 3.948 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.248 0.752 38 H 0.219 0.781 39 H 0.216 0.784 40 H 0.211 0.789 41 H 0.204 0.796 42 H 0.197 0.803 43 H 0.030 0.970 44 H 0.096 0.904 45 H 0.026 0.974 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.418 -19.162 0.819 26.591 hybrid contribution -0.683 0.750 0.223 1.039 sum -19.101 -18.412 1.042 26.551 Atomic orbital electron populations 1.70141 1.06097 1.25173 1.55101 1.25568 0.95984 1.00814 1.01721 0.85387 0.78016 0.80291 0.77328 1.21276 1.22258 1.20218 1.19430 0.93799 0.86411 1.39209 0.91552 1.44348 1.33628 1.01716 1.52475 1.20481 0.96688 0.86932 0.94018 1.22648 0.94420 1.00233 0.99885 1.21542 0.96353 1.01284 0.94916 1.20143 0.82064 0.93846 0.98081 0.91256 1.45993 1.18461 1.54770 1.15601 1.18112 0.85018 0.78853 0.84057 1.90811 1.64334 1.59189 1.26929 1.21178 0.94965 0.99003 0.90151 1.67258 1.11588 1.16856 1.20819 1.23301 0.89145 0.94941 1.01930 1.22977 1.02082 0.95385 0.90376 1.19385 0.93916 0.99910 0.98044 1.22003 1.01155 0.93701 0.90605 1.22530 0.94872 0.99690 1.00230 1.23904 0.93498 0.89747 0.97529 1.68255 1.36216 1.15030 1.00154 1.19671 0.93160 0.98285 0.93117 1.21085 0.97168 0.96137 1.00876 1.19884 0.86007 0.98598 0.90290 0.94445 0.94570 0.94964 0.90483 0.92715 0.90865 0.93139 0.75180 0.78060 0.78399 0.78873 0.79609 0.80314 0.96957 0.90362 0.97430 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 9.43 21.65 0.20 -53.40 16 2 C -0.05 -2.54 4.91 84.86 0.42 -2.12 16 3 Si 0.96 45.84 29.60 68.60 2.03 47.87 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.26 -14.46 9.62 84.03 0.81 -13.65 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 9 N -0.60 -31.31 2.61 -708.84 -1.85 -33.16 16 10 C 0.15 6.47 5.13 87.42 0.45 6.92 16 11 C -0.13 -4.95 6.40 31.70 0.20 -4.74 16 12 C -0.10 -4.00 5.30 30.30 0.16 -3.84 16 13 C 0.16 6.83 2.17 43.91 0.10 6.92 16 14 H 0.07 3.14 5.83 -2.38 -0.01 3.13 16 15 N -0.70 -26.21 5.00 -450.55 -2.25 -28.46 16 16 C 0.55 22.28 7.66 86.80 0.67 22.95 16 17 O -0.54 -25.35 14.93 -3.87 -0.06 -25.41 16 18 C 0.10 3.24 6.81 42.45 0.29 3.53 16 19 N -0.45 -12.04 9.48 -184.14 -1.75 -13.78 16 20 C 0.05 0.90 11.12 84.56 0.94 1.84 16 21 C -0.09 -1.07 9.93 22.69 0.23 -0.84 16 22 C -0.11 -1.95 5.75 -21.27 -0.12 -2.07 16 23 C -0.05 -0.51 9.95 22.49 0.22 -0.28 16 24 C -0.15 -1.69 10.03 22.18 0.22 -1.46 16 25 C 0.13 2.58 11.14 85.06 0.95 3.53 16 26 N -0.49 -15.56 8.49 -187.91 -1.60 -17.16 16 27 C 0.08 2.44 6.61 40.63 0.27 2.71 16 28 C -0.11 -5.56 4.73 28.35 0.13 -5.42 16 29 C 0.18 9.35 5.25 83.58 0.44 9.78 16 30 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.04 1.55 7.99 -2.39 -0.02 1.53 16 32 H 0.03 1.39 6.89 -2.39 -0.02 1.37 16 33 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.38 7.81 -2.39 -0.02 2.36 16 36 H 0.05 2.30 6.82 -2.38 -0.02 2.28 16 37 H 0.41 13.61 7.79 -92.71 -0.72 12.89 16 38 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.20 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.19 0.06 8.06 -2.91 -0.02 0.04 16 41 H 0.19 0.38 8.06 -2.91 -0.02 0.35 16 42 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.01 0.61 7.90 -2.39 -0.02 0.59 16 44 H 0.08 4.25 5.29 -2.39 -0.01 4.24 16 45 H 0.01 0.40 8.13 -2.39 -0.02 0.38 16 46 H 0.06 3.53 6.05 -2.39 -0.01 3.51 16 Total: -1.00 -80.89 366.66 1.40 -79.49 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.30 Total: 20.27 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 6.37 Total: 23.74 kcal Atomic # 7 Polarization: -138.72 SS G_CDS: -7.24 Total: -145.96 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.06 Total: -25.41 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -80.89 1.40 -79.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052457224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.721 kcal (2) G-P(sol) polarization free energy of solvation -80.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds