Wall clock time and date at job start Tue Mar 31 2020 23:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00372 * 2 1 4 4 H 1.48501 * 109.46895 * 275.57469 * 3 2 1 5 5 H 1.48501 * 109.47135 * 35.56942 * 3 2 1 6 6 H 1.48498 * 109.47370 * 155.57342 * 3 2 1 7 7 C 1.38811 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00039 * 336.34244 * 7 2 1 9 9 N 1.36937 * 120.00211 * 156.34394 * 7 2 1 10 10 C 1.43435 * 120.53336 * 320.20533 * 9 7 2 11 11 C 1.54893 * 116.08119 * 271.58794 * 10 9 7 12 12 C 1.54846 * 110.14227 * 318.64376 * 11 10 9 13 13 C 1.50127 * 110.81379 * 321.13273 * 12 11 10 14 14 H 1.08997 * 110.37091 * 338.64491 * 13 12 11 15 15 N 1.46510 * 110.24747 * 216.65744 * 13 12 11 16 16 C 1.34772 * 119.99848 * 159.02147 * 15 13 12 17 17 O 1.21556 * 120.00365 * 359.97438 * 16 15 13 18 18 C 1.47857 * 120.00050 * 179.97438 * 16 15 13 19 19 C 1.40621 * 119.75451 * 359.97438 * 18 16 15 20 20 C 1.35728 * 120.83563 * 179.97438 * 19 18 16 21 21 C 1.40714 * 120.08549 * 359.97438 * 20 19 18 22 22 N 1.33788 * 120.85904 * 180.02562 * 21 20 19 23 23 C 1.31335 * 119.76547 * 179.97438 * 22 21 20 24 24 C 1.39753 * 120.70289 * 0.04314 * 23 22 21 25 25 N 1.31270 * 120.67901 * 359.97438 * 24 23 22 26 26 C 1.33825 * 119.73862 * 359.97438 * 25 24 23 27 27 C 1.38418 * 119.75934 * 179.97438 * 18 16 15 28 28 C 1.52523 * 105.41783 * 97.68458 * 13 12 11 29 29 C 1.46237 * 114.27447 * 270.59463 * 28 13 12 30 30 H 0.97002 * 119.99769 * 359.97438 * 1 2 3 31 31 H 1.08992 * 108.15690 * 33.30800 * 10 9 7 32 32 H 1.09004 * 108.15650 * 150.07943 * 10 9 7 33 33 H 1.09001 * 109.36342 * 78.84944 * 11 10 9 34 34 H 1.09007 * 109.36040 * 198.57359 * 11 10 9 35 35 H 1.08998 * 109.20977 * 200.79142 * 12 11 10 36 36 H 1.08995 * 109.20924 * 81.47784 * 12 11 10 37 37 H 0.96997 * 120.00016 * 339.01357 * 15 13 12 38 38 H 1.08001 * 119.58267 * 0.25063 * 19 18 16 39 39 H 1.08002 * 119.95916 * 180.02562 * 20 19 18 40 40 H 1.07994 * 119.64349 * 180.02562 * 23 22 21 41 41 H 1.08006 * 119.65957 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.24817 * 359.97438 * 27 18 16 43 43 H 1.09002 * 108.51988 * 31.82843 * 28 13 12 44 44 H 1.08994 * 108.52737 * 149.50645 * 28 13 12 45 45 H 1.09000 * 109.84367 * 177.91241 * 29 28 13 46 46 H 1.08996 * 109.84617 * 298.82896 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3800 2.1143 -1.3935 5 1 1.5116 2.6158 0.8144 6 1 3.6017 1.4089 0.5789 7 6 2.0102 -1.2022 -0.0005 8 1 1.5382 -2.0984 0.3744 9 7 3.2932 -1.2519 -0.4764 10 6 3.6668 -0.5073 -1.6440 11 6 3.4691 -1.2257 -3.0019 12 6 3.9070 -2.7068 -2.8904 13 6 5.1376 -2.8366 -2.0403 14 1 5.6703 -1.8867 -1.9963 15 7 6.0133 -3.8838 -2.5723 16 6 7.3221 -3.8952 -2.2513 17 8 7.7763 -3.0365 -1.5206 18 6 8.2058 -4.9524 -2.7877 19 6 7.6749 -5.9436 -3.6321 20 6 8.4661 -6.9239 -4.1373 21 6 9.8365 -6.9584 -3.8194 22 7 10.6306 -7.9172 -4.3091 23 6 11.9067 -7.9286 -3.9988 24 6 12.4459 -6.9491 -3.1603 25 7 11.6872 -5.9982 -2.6669 26 6 10.3841 -5.9646 -2.9694 27 6 9.5494 -4.9590 -2.4552 28 6 4.6336 -3.2239 -0.6538 29 6 4.3318 -2.0873 0.2154 30 1 -0.4850 0.8401 0.0004 31 1 3.0853 0.4144 -1.6595 32 1 4.7199 -0.2405 -1.5542 33 1 2.4175 -1.1803 -3.2851 34 1 4.0703 -0.7297 -3.7641 35 1 4.1172 -3.0947 -3.8871 36 1 3.0996 -3.2868 -2.4435 37 1 5.6510 -4.5689 -3.1556 38 1 6.6252 -5.9221 -3.8854 39 1 8.0436 -7.6780 -4.7849 40 1 12.5461 -8.7032 -4.3955 41 1 13.4976 -6.9748 -2.9158 42 1 9.9531 -4.1956 -1.8067 43 1 3.7294 -3.8217 -0.7686 44 1 5.3930 -3.8365 -0.1679 45 1 3.9443 -2.4439 1.1697 46 1 5.2335 -1.4973 0.3796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052922656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:36 Heat of formation + Delta-G solvation = 44.586894 kcal Electronic energy + Delta-G solvation = -28816.479027 eV Core-core repulsion = 24899.218778 eV Total energy + Delta-G solvation = -3917.260250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.49823 -41.29439 -39.60165 -38.05752 -36.43933 -35.85311 -34.28438 -33.43111 -32.78237 -31.70535 -31.59998 -28.18561 -26.91394 -25.70239 -25.42782 -25.05517 -23.46030 -22.39382 -21.66686 -21.34362 -19.79809 -19.35391 -18.42488 -18.19132 -17.85619 -17.26333 -16.79686 -16.37010 -16.29502 -15.93834 -15.68332 -15.55382 -15.41378 -15.22088 -14.97812 -14.84750 -14.73009 -14.30163 -13.86095 -13.62279 -13.49865 -13.24267 -12.93451 -12.84109 -12.81791 -12.75903 -12.74914 -12.53305 -12.29326 -12.02498 -11.89199 -11.61324 -11.38212 -11.25907 -11.07118 -10.54836 -10.24100 -10.18734 -10.01960 -9.72922 -8.68124 -8.20436 -5.58561 -1.04263 -0.64522 0.69747 1.27693 1.29774 1.40163 1.51980 1.96133 2.16999 2.42391 2.93060 2.97570 3.04038 3.09862 3.17517 3.29094 3.51504 3.75950 3.81219 3.86227 3.96280 3.98222 4.12267 4.16655 4.39399 4.40547 4.41967 4.47321 4.66045 4.68432 4.71087 4.83499 4.86654 4.92084 5.01370 5.01981 5.03715 5.11420 5.16094 5.19738 5.33563 5.43476 5.46736 5.49385 5.56893 5.97640 6.18631 6.18775 6.48190 6.64536 7.01795 7.13230 7.63753 8.12233 8.99025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.002195 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.588603 B =12755.211320 C =13100.461333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.012 4.012 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.307 1.307 6 H -0.269 1.269 7 C -0.249 4.249 8 H 0.043 0.957 9 N -0.610 5.610 10 C 0.136 3.864 11 C -0.133 4.133 12 C -0.104 4.104 13 C 0.159 3.841 14 H 0.075 0.925 15 N -0.697 5.697 16 C 0.556 3.444 17 O -0.572 6.572 18 C -0.115 4.115 19 C -0.068 4.068 20 C -0.082 4.082 21 C 0.076 3.924 22 N -0.449 5.449 23 C 0.097 3.903 24 C 0.084 3.916 25 N -0.454 5.454 26 C 0.047 3.953 27 C -0.031 4.031 28 C -0.129 4.129 29 C 0.139 3.861 30 H 0.263 0.737 31 H 0.019 0.981 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.223 0.777 41 H 0.218 0.782 42 H 0.135 0.865 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.079 -18.923 -13.465 33.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.209 4.209 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.236 1.236 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.061 0.939 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.173 4.173 12 C -0.142 4.142 13 C 0.055 3.945 14 H 0.093 0.907 15 N -0.349 5.349 16 C 0.343 3.657 17 O -0.452 6.452 18 C -0.120 4.120 19 C -0.088 4.088 20 C -0.101 4.101 21 C -0.047 4.047 22 N -0.163 5.163 23 C -0.079 4.079 24 C -0.093 4.093 25 N -0.168 5.168 26 C -0.075 4.075 27 C -0.052 4.052 28 C -0.169 4.169 29 C 0.016 3.984 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.190 0.810 39 H 0.188 0.812 40 H 0.239 0.761 41 H 0.235 0.765 42 H 0.153 0.847 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 23.969 -18.106 -12.895 32.690 hybrid contribution -0.250 0.998 0.347 1.086 sum 23.718 -17.109 -12.548 31.823 Atomic orbital electron populations 1.69993 1.07433 1.27328 1.53752 1.26054 0.95530 1.00703 0.98647 0.85962 0.79246 0.81072 0.77273 1.20258 1.23585 1.19357 1.18568 0.88331 0.92900 1.38138 0.93911 1.44290 1.06913 1.56409 1.25769 1.20810 0.97087 0.93614 0.87537 1.22652 1.00825 0.96144 0.97726 1.21575 0.95553 0.97092 1.00003 1.20097 0.90451 0.90558 0.93395 0.90677 1.45921 1.07377 1.31060 1.50573 1.18436 0.82579 0.84490 0.80177 1.90801 1.75909 1.40091 1.38412 1.19917 0.93512 0.97356 1.01250 1.21291 1.02022 0.91696 0.93751 1.20985 0.89803 0.99443 0.99836 1.19945 0.96492 0.92443 0.95802 1.68827 1.06209 1.21065 1.20225 1.24990 0.91755 0.98413 0.92765 1.24924 1.02891 0.89218 0.92269 1.68695 1.03896 1.23755 1.20476 1.19483 0.92060 0.96944 0.98968 1.21185 0.91846 0.95956 0.96172 1.21144 1.00400 0.99085 0.96265 1.20450 0.90764 0.92029 0.95186 0.92840 0.96331 0.94049 0.93281 0.90302 0.89268 0.91934 0.74546 0.81023 0.81199 0.76065 0.76542 0.84684 0.91798 0.92584 0.92005 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.97 21.65 0.30 -57.98 16 2 C -0.01 -0.71 5.28 84.86 0.45 -0.26 16 3 Si 0.94 47.18 25.26 68.60 1.73 48.91 16 4 H -0.28 -13.29 6.73 99.48 0.67 -12.62 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.25 -13.95 9.92 84.03 0.83 -13.12 16 8 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 9 N -0.61 -28.46 2.14 -707.86 -1.51 -29.97 16 10 C 0.14 5.78 4.22 87.59 0.37 6.15 16 11 C -0.13 -4.52 6.41 31.87 0.20 -4.32 16 12 C -0.10 -2.91 5.30 30.30 0.16 -2.75 16 13 C 0.16 4.61 2.17 43.91 0.10 4.70 16 14 H 0.08 2.56 5.83 -2.39 -0.01 2.54 16 15 N -0.70 -15.29 4.96 -450.57 -2.24 -17.53 16 16 C 0.56 14.53 7.62 86.79 0.66 15.19 16 17 O -0.57 -20.20 16.02 -3.89 -0.06 -20.27 16 18 C -0.12 -2.41 5.87 -20.11 -0.12 -2.53 16 19 C -0.07 -0.92 9.44 22.27 0.21 -0.71 16 20 C -0.08 -1.13 9.95 22.29 0.22 -0.91 16 21 C 0.08 1.39 6.59 40.33 0.27 1.66 16 22 N -0.45 -6.94 10.46 -187.89 -1.96 -8.90 16 23 C 0.10 0.83 11.22 85.13 0.95 1.78 16 24 C 0.08 0.84 11.21 85.14 0.95 1.80 16 25 N -0.45 -8.88 10.46 -188.12 -1.97 -10.85 16 26 C 0.05 1.02 6.58 40.25 0.27 1.29 16 27 C -0.03 -0.73 9.56 22.85 0.22 -0.51 16 28 C -0.13 -4.25 4.91 28.35 0.14 -4.11 16 29 C 0.14 5.57 6.11 83.58 0.51 6.08 16 30 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.02 0.88 3.40 -2.39 -0.01 0.87 16 32 H 0.04 1.65 6.88 -2.38 -0.02 1.63 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.09 1.82 7.81 -2.39 -0.02 1.80 16 36 H 0.06 1.96 6.83 -2.39 -0.02 1.95 16 37 H 0.42 5.79 6.43 -92.71 -0.60 5.20 16 38 H 0.17 1.09 6.35 -2.91 -0.02 1.07 16 39 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.22 -0.32 8.06 -2.91 -0.02 -0.35 16 41 H 0.22 0.17 8.06 -2.91 -0.02 0.15 16 42 H 0.14 3.59 7.61 -2.91 -0.02 3.57 16 43 H 0.06 2.14 6.93 -2.39 -0.02 2.13 16 44 H 0.06 1.77 7.90 -2.39 -0.02 1.75 16 45 H 0.06 2.52 7.99 -2.39 -0.02 2.50 16 46 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 Total: -1.00 -79.49 365.47 1.09 -78.40 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.40 Total: 8.76 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.40 Total: 9.42 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -7.38 Total: -125.23 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.27 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.73 Total: 48.91 kcal Total: -79.49 1.09 -78.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052922656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.987 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds