Wall clock time and date at job start Tue Mar 31 2020 23:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00092 * 2 1 4 4 H 1.48496 * 109.47532 * 239.99874 * 3 2 1 5 5 H 1.48496 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46913 * 120.00120 * 3 2 1 7 7 C 1.38815 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99814 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.47144 * 125.57958 * 359.97438 * 9 7 2 11 11 C 1.54628 * 107.37687 * 179.10942 * 10 9 7 12 12 C 1.53509 * 102.70134 * 339.37783 * 11 10 9 13 13 C 1.51785 * 117.00195 * 164.16687 * 12 11 10 14 14 N 1.47400 * 87.51725 * 92.93164 * 13 12 11 15 15 C 1.34772 * 135.85270 * 205.66800 * 14 13 12 16 16 O 1.21282 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00017 * 179.97438 * 15 14 13 18 18 C 1.50704 * 109.47230 * 179.97438 * 17 15 14 19 19 C 1.39687 * 119.08951 * 90.00394 * 18 17 15 20 20 C 1.35651 * 121.72486 * 180.25931 * 19 18 17 21 21 C 1.41135 * 119.53328 * 359.49150 * 20 19 18 22 22 C 1.38243 * 134.81547 * 180.15875 * 21 20 19 23 23 N 1.33986 * 107.90785 * 180.32480 * 22 21 20 24 24 H 0.96999 * 125.02001 * 179.97438 * 23 22 21 25 25 N 1.39957 * 109.95599 * 359.97438 * 23 22 21 26 26 C 1.32064 * 108.96067 * 359.97438 * 25 23 22 27 27 C 1.35636 * 119.09345 * 270.01999 * 18 17 15 28 28 C 1.47389 * 88.29145 * 25.91988 * 14 13 12 29 29 C 1.47751 * 125.57865 * 179.97438 * 9 7 2 30 30 H 0.97003 * 120.00146 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.86825 * 59.65353 * 10 9 7 32 32 H 1.09007 * 109.86170 * 298.55490 * 10 9 7 33 33 H 1.09001 * 110.76173 * 221.07948 * 11 10 9 34 34 H 1.08997 * 110.77007 * 97.68695 * 11 10 9 35 35 H 1.09003 * 113.54190 * 338.27149 * 13 12 11 36 36 H 1.09000 * 113.61085 * 207.59898 * 13 12 11 37 37 H 1.09001 * 109.47154 * 60.00139 * 17 15 14 38 38 H 1.09001 * 109.47056 * 300.00053 * 17 15 14 39 39 H 1.08002 * 119.13542 * 359.97079 * 19 18 17 40 40 H 1.07994 * 120.23327 * 179.74333 * 20 19 18 41 41 H 1.08000 * 126.04616 * 0.29912 * 22 21 20 42 42 H 1.08000 * 120.19802 * 0.02562 * 27 18 17 43 43 H 1.09004 * 113.54020 * 88.74021 * 28 14 13 44 44 H 1.09006 * 113.54315 * 219.42032 * 28 14 13 45 45 H 1.08999 * 110.40639 * 83.48808 * 29 9 7 46 46 H 1.08995 * 110.40960 * 321.06093 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1390 -2.5311 0.0005 11 6 -0.4552 -4.0445 -0.0228 12 6 0.8465 -4.6530 -0.5630 13 6 1.0375 -6.1474 -0.3779 14 7 0.4447 -6.3240 -1.7158 15 6 -0.2221 -7.3046 -2.3563 16 8 -0.4506 -8.3526 -1.7902 17 6 -0.6837 -7.0989 -3.7760 18 6 -1.3975 -8.3362 -4.2564 19 6 -2.7769 -8.4425 -4.0636 20 6 -3.4719 -9.5343 -4.4700 21 6 -2.7934 -10.5906 -5.1148 22 6 -3.1700 -11.8100 -5.6462 23 7 -2.0720 -12.4043 -6.1324 24 1 -2.0535 -13.2739 -6.5618 25 7 -0.9556 -11.5851 -5.9290 26 6 -1.3406 -10.4788 -5.3191 27 6 -0.6827 -9.3160 -4.8637 28 6 0.9041 -4.9641 -2.0505 29 6 1.9363 -3.7334 -0.0016 30 1 -0.4850 0.8401 0.0004 31 1 -0.5587 -2.0513 -0.8836 32 1 -0.5545 -2.0798 0.9016 33 1 -1.2878 -4.2550 -0.6941 34 1 -0.6654 -4.4111 0.9819 35 1 0.4322 -6.5674 0.4255 36 1 2.0831 -6.4502 -0.3215 37 1 0.1787 -6.9065 -4.4142 38 1 -1.3634 -6.2478 -3.8173 39 1 -3.3031 -7.6364 -3.5740 40 1 -4.5376 -9.5930 -4.3050 41 1 -4.1720 -12.2125 -5.6657 42 1 0.3832 -9.2068 -4.9987 43 1 1.9127 -4.9344 -2.4628 44 1 0.1874 -4.3961 -2.6437 45 1 2.1997 -4.0320 1.0130 46 1 2.8165 -3.7507 -0.6443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073158220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:02 Heat of formation + Delta-G solvation = 130.719057 kcal Electronic energy + Delta-G solvation = -28329.827899 eV Core-core repulsion = 24416.302621 eV Total energy + Delta-G solvation = -3913.525279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.46625 -40.62110 -38.74231 -37.20508 -35.61695 -32.68171 -32.26627 -32.07475 -29.81458 -29.04757 -28.86825 -27.76069 -25.94311 -25.58781 -23.91793 -23.31531 -21.60294 -20.90812 -20.29722 -19.27119 -18.36315 -18.22853 -16.98769 -16.85468 -16.56160 -16.05935 -15.68662 -15.29176 -15.07651 -14.78381 -14.68556 -14.26957 -14.12130 -13.83443 -13.61148 -13.11516 -12.95255 -12.46732 -12.28874 -12.14684 -11.93468 -11.90178 -11.80784 -11.78930 -11.64942 -11.00923 -10.91327 -10.66142 -10.52625 -10.50503 -10.41262 -10.18126 -10.13800 -9.85088 -9.67489 -9.55468 -8.80884 -8.60660 -8.49812 -7.80566 -6.84867 -5.72306 -3.05912 0.41651 1.61470 2.24689 2.43255 2.76289 2.97879 3.40027 3.44687 3.45684 3.70473 4.03181 4.33560 4.45488 4.58329 4.64553 4.74860 4.85964 4.95910 5.01498 5.08658 5.28195 5.33471 5.37653 5.47087 5.48528 5.52046 5.57564 5.67329 5.71771 5.82711 5.84547 5.93307 6.00978 6.19266 6.23837 6.25709 6.33733 6.46441 6.52485 6.53013 6.66911 6.70499 6.71451 6.79003 7.35471 7.54329 7.60798 7.81200 7.90382 8.23871 8.29665 9.20594 9.80616 10.46266 11.39168 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.001951 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.508482 B =14347.411635 C =14527.157140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.180 3.820 11 C -0.117 4.117 12 C -0.105 4.105 13 C 0.119 3.881 14 N -0.645 5.645 15 C 0.543 3.457 16 O -0.540 6.540 17 C -0.101 4.101 18 C -0.015 4.015 19 C -0.133 4.133 20 C -0.047 4.047 21 C -0.205 4.205 22 C 0.078 3.922 23 N -0.429 5.429 24 H 0.442 0.558 25 N -0.309 5.309 26 C 0.110 3.890 27 C -0.094 4.094 28 C 0.119 3.881 29 C 0.153 3.847 30 H 0.253 0.747 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.187 0.813 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.026 0.974 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 -20.872 -11.529 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.107 4.107 13 C -0.004 4.004 14 N -0.380 5.380 15 C 0.332 3.668 16 O -0.417 6.417 17 C -0.141 4.141 18 C -0.020 4.020 19 C -0.152 4.152 20 C -0.068 4.068 21 C -0.215 4.215 22 C -0.079 4.079 23 N -0.129 5.129 24 H 0.286 0.714 25 N -0.138 5.138 26 C -0.043 4.043 27 C -0.115 4.115 28 C -0.003 4.003 29 C 0.026 3.974 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.204 0.796 42 H 0.144 0.856 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.194 -22.027 -11.854 25.769 hybrid contribution -0.220 0.827 0.107 0.863 sum -6.414 -21.199 -11.748 25.071 Atomic orbital electron populations 1.69948 1.04856 1.25150 1.56994 1.24796 0.95716 0.97649 1.02271 0.86205 0.78443 0.83244 0.77884 1.21183 1.21662 1.21216 1.18997 0.90400 0.82347 1.43896 0.90465 1.44533 1.01601 0.99668 1.87322 1.21224 0.84245 0.87866 1.01168 1.22461 0.94219 0.99152 0.99654 1.22176 0.99896 0.93421 0.95188 1.22754 0.98289 0.94219 0.85096 1.49861 1.54954 1.16340 1.16891 1.19953 0.77675 0.81828 0.87309 1.90722 1.57134 1.25800 1.68042 1.20694 1.01974 0.97507 0.93876 1.18801 0.93546 0.94310 0.95391 1.20416 0.93406 0.99023 1.02393 1.20154 0.98957 0.91515 0.96133 1.19663 0.94225 0.97129 1.10466 1.22668 0.93230 0.93892 0.98134 1.46295 1.05174 1.18062 1.43415 0.71399 1.77679 1.05406 1.04128 1.26595 1.20850 0.92944 0.93734 0.96817 1.19616 0.99193 0.90790 1.01924 1.22901 1.00017 0.79850 0.97543 1.21140 0.93248 0.85729 0.97262 0.93706 0.93505 0.93857 0.92071 0.91858 0.90566 0.89920 0.87836 0.87513 0.85883 0.85748 0.79606 0.85601 0.89524 0.90032 0.95628 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 10.30 55.49 0.57 -25.69 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.08 10.28 -15.06 -0.15 -6.23 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.50 3.41 -170.55 -0.58 -15.08 16 10 C 0.18 4.11 5.39 -2.83 -0.02 4.10 16 11 C -0.12 -2.05 6.41 -25.61 -0.16 -2.21 16 12 C -0.11 -1.66 1.06 -155.22 -0.16 -1.82 16 13 C 0.12 1.68 8.02 -7.47 -0.06 1.62 16 14 N -0.64 -9.14 3.70 -185.69 -0.69 -9.82 16 15 C 0.54 8.01 8.07 -10.99 -0.09 7.92 16 16 O -0.54 -9.98 16.81 5.56 0.09 -9.88 16 17 C -0.10 -1.13 5.59 -29.04 -0.16 -1.29 16 18 C -0.02 -0.19 4.33 -105.01 -0.45 -0.64 16 19 C -0.13 -1.50 9.51 -39.97 -0.38 -1.88 16 20 C -0.05 -0.48 10.09 -39.41 -0.40 -0.88 16 21 C -0.21 -2.22 6.33 -105.19 -0.67 -2.89 16 22 C 0.08 0.56 12.07 -16.61 -0.20 0.36 16 23 N -0.43 -3.34 7.18 30.84 0.22 -3.12 16 24 H 0.44 1.62 8.96 -182.71 -1.64 -0.01 16 25 N -0.31 -3.86 12.70 33.25 0.42 -3.43 16 26 C 0.11 1.45 7.49 -83.06 -0.62 0.82 16 27 C -0.09 -1.21 9.65 -39.41 -0.38 -1.60 16 28 C 0.12 1.64 7.78 -7.33 -0.06 1.58 16 29 C 0.15 2.86 6.70 -3.23 -0.02 2.84 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 31 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 32 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 33 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.96 8.06 -51.93 -0.42 0.54 16 38 H 0.11 1.02 8.07 -51.93 -0.42 0.60 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.19 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.76 8.00 -51.93 -0.42 0.34 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -35.61 382.42 -11.16 -46.77 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.85 Total: -1.48 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -4.09 Total: -0.51 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.05 Total: -57.15 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.61 -11.16 -46.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073158220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.485 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds