Wall clock time and date at job start Tue Mar 31 2020 23:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00224 * 2 1 4 4 H 1.48508 * 109.46999 * 239.99940 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47314 * 120.00127 * 3 2 1 7 7 C 1.38818 * 119.99353 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99406 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00513 * 0.02562 * 7 2 1 10 10 C 1.47154 * 125.57791 * 359.96881 * 9 7 2 11 11 C 1.54632 * 107.37703 * 179.11026 * 10 9 7 12 12 C 1.53516 * 102.70095 * 339.39221 * 11 10 9 13 13 C 1.51786 * 116.99768 * 164.16711 * 12 11 10 14 14 N 1.47400 * 87.51914 * 92.92394 * 13 12 11 15 15 C 1.34770 * 135.85159 * 205.66141 * 14 13 12 16 16 O 1.21285 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00319 * 179.97438 * 15 14 13 18 18 C 1.50697 * 109.47391 * 180.02562 * 17 15 14 19 19 C 1.34224 * 126.56749 * 264.97215 * 18 17 15 20 20 N 1.36920 * 109.91258 * 179.97438 * 19 18 17 21 21 H 0.96996 * 124.98766 * 180.02562 * 20 19 18 22 22 C 1.37423 * 110.02382 * 0.02562 * 20 19 18 23 23 N 1.32654 * 133.19188 * 180.02562 * 22 20 19 24 24 C 1.31588 * 121.67268 * 180.02562 * 23 22 20 25 25 C 1.38663 * 121.58215 * 359.97283 * 24 23 22 26 26 C 1.38205 * 119.41253 * 0.02583 * 25 24 23 27 27 C 1.39695 * 118.03748 * 0.02562 * 26 25 24 28 28 C 1.47391 * 88.29412 * 25.91953 * 14 13 12 29 29 C 1.47756 * 125.58459 * 180.02562 * 9 7 2 30 30 H 0.97003 * 119.99543 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.86100 * 59.66268 * 10 9 7 32 32 H 1.08994 * 109.86766 * 298.56242 * 10 9 7 33 33 H 1.08994 * 110.76459 * 221.08420 * 11 10 9 34 34 H 1.09000 * 110.76106 * 97.68962 * 11 10 9 35 35 H 1.08999 * 113.54438 * 338.25896 * 13 12 11 36 36 H 1.09006 * 113.60473 * 207.58950 * 13 12 11 37 37 H 1.08994 * 109.46751 * 59.99737 * 17 15 14 38 38 H 1.09001 * 109.46999 * 300.00496 * 17 15 14 39 39 H 1.08000 * 125.04153 * 0.02562 * 19 18 17 40 40 H 1.07997 * 119.21176 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.29675 * 180.02562 * 25 24 23 42 42 H 1.07989 * 120.98091 * 179.72540 * 26 25 24 43 43 H 1.08992 * 113.54845 * 88.74234 * 28 14 13 44 44 H 1.09001 * 113.54289 * 219.42594 * 28 14 13 45 45 H 1.08992 * 110.40680 * 83.47521 * 29 9 7 46 46 H 1.09010 * 110.39772 * 321.05258 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1391 -2.5311 0.0007 11 6 -0.4553 -4.0446 -0.0223 12 6 0.8469 -4.6534 -0.5610 13 6 1.0376 -6.1477 -0.3750 14 7 0.4459 -6.3250 -1.7133 15 6 -0.2204 -7.3058 -2.3538 16 8 -0.4501 -8.3532 -1.7869 17 6 -0.6810 -7.1010 -3.7740 18 6 -1.3954 -8.3380 -4.2539 19 6 -0.8588 -9.3514 -4.9515 20 7 -1.8138 -10.2986 -5.2075 21 1 -1.6630 -11.1225 -5.6966 22 6 -3.0174 -9.9105 -4.6696 23 7 -4.2218 -10.4659 -4.6443 24 6 -5.2400 -9.8810 -4.0504 25 6 -5.1056 -8.6534 -3.4198 26 6 -3.8745 -8.0252 -3.4128 27 6 -2.8079 -8.6636 -4.0501 28 6 0.9056 -4.9653 -2.0484 29 6 1.9362 -3.7335 0.0016 30 1 -0.4849 0.8401 0.0004 31 1 -0.5580 -2.0517 -0.8840 32 1 -0.5553 -2.0794 0.9010 33 1 -1.2874 -4.2553 -0.6941 34 1 -0.6662 -4.4105 0.9825 35 1 0.4317 -6.5673 0.4281 36 1 2.0832 -6.4505 -0.3177 37 1 0.1819 -6.9089 -4.4116 38 1 -1.3606 -6.2498 -3.8163 39 1 0.1733 -9.4113 -5.2638 40 1 -6.2036 -10.3687 -4.0542 41 1 -5.9552 -8.1922 -2.9383 42 1 -3.7423 -7.0668 -2.9330 43 1 1.9144 -4.9357 -2.4599 44 1 0.1894 -4.3975 -2.6424 45 1 2.1982 -4.0312 1.0168 46 1 2.8173 -3.7513 -0.6400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073466018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:29 Heat of formation + Delta-G solvation = 109.272501 kcal Electronic energy + Delta-G solvation = -28723.238714 eV Core-core repulsion = 24808.783442 eV Total energy + Delta-G solvation = -3914.455271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.71831 -40.58340 -38.40391 -37.81161 -35.65162 -33.60481 -32.25958 -31.58650 -29.89655 -29.52985 -28.81416 -27.29772 -25.95711 -25.40682 -23.84456 -23.61039 -22.70144 -20.39295 -20.14466 -19.03428 -18.41688 -18.18882 -16.99623 -16.90425 -16.59017 -16.21980 -15.71958 -15.47445 -15.08794 -14.82544 -14.70906 -14.29037 -14.04871 -13.82372 -13.42418 -13.09637 -12.99394 -12.91792 -12.43744 -12.40903 -12.36912 -12.22177 -11.93837 -11.83625 -11.63472 -11.02961 -10.93105 -10.68132 -10.49880 -10.41398 -10.19075 -10.15292 -9.86709 -9.68622 -9.56427 -9.51949 -8.62372 -8.58938 -8.51604 -8.12505 -6.86734 -5.74005 -3.07671 0.86288 1.25022 2.35394 2.60777 2.76749 3.06942 3.38515 3.43214 3.44342 3.78223 4.33469 4.43870 4.47831 4.53550 4.57279 4.73058 4.81632 4.92705 4.99004 5.07996 5.24182 5.27035 5.30782 5.43597 5.46821 5.54803 5.61754 5.65224 5.69776 5.78654 5.81143 5.82626 5.93805 6.13702 6.17178 6.21769 6.26005 6.35670 6.44324 6.50495 6.64796 6.69185 6.79149 7.10560 7.52470 7.58963 7.79446 7.86243 7.89775 8.22122 8.30646 9.18809 9.78863 10.44500 11.37476 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020510 B = 0.002254 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.847482 B =12420.432783 C =12958.205526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.180 3.820 11 C -0.116 4.116 12 C -0.105 4.105 13 C 0.119 3.881 14 N -0.646 5.646 15 C 0.540 3.460 16 O -0.540 6.540 17 C -0.061 4.061 18 C -0.140 4.140 19 C 0.073 3.927 20 N -0.581 5.581 21 H 0.419 0.581 22 C 0.285 3.715 23 N -0.503 5.503 24 C 0.134 3.866 25 C -0.203 4.203 26 C -0.024 4.024 27 C -0.133 4.133 28 C 0.120 3.880 29 C 0.153 3.847 30 H 0.253 0.747 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.159 0.841 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.026 0.974 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 -17.607 -10.312 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.107 4.107 13 C -0.004 4.004 14 N -0.381 5.381 15 C 0.329 3.671 16 O -0.417 6.417 17 C -0.101 4.101 18 C -0.148 4.148 19 C -0.053 4.053 20 N -0.187 5.187 21 H 0.257 0.743 22 C 0.052 3.948 23 N -0.216 5.216 24 C -0.031 4.031 25 C -0.225 4.225 26 C -0.050 4.050 27 C -0.140 4.140 28 C -0.003 4.003 29 C 0.026 3.974 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.194 0.806 40 H 0.176 0.824 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.724 -19.023 -10.633 22.299 hybrid contribution 0.704 1.322 0.214 1.513 sum -4.020 -17.701 -10.419 20.929 Atomic orbital electron populations 1.69950 1.04866 1.25164 1.56951 1.24795 0.95711 0.97650 1.02237 0.86207 0.78449 0.83241 0.77885 1.21188 1.21645 1.21199 1.18995 0.90394 0.82347 1.43962 0.90470 1.44535 1.01598 0.99670 1.87329 1.21222 0.84246 0.87856 1.01169 1.22457 0.94208 0.99159 0.99637 1.22184 0.99881 0.93420 0.95204 1.22745 0.98251 0.94231 0.85186 1.49884 1.55084 1.16359 1.16799 1.20155 0.77523 0.81778 0.87634 1.90705 1.56954 1.26021 1.68068 1.19878 1.00821 0.96267 0.93129 1.19512 0.91904 0.97895 1.05502 1.21581 0.93902 0.88638 1.01226 1.41432 1.06162 1.21191 1.49920 0.74349 1.18343 0.87154 0.91909 0.97386 1.66450 0.97768 1.36044 1.21373 1.22403 0.95756 0.92345 0.92624 1.21850 0.98298 0.97841 1.04466 1.20990 0.90958 0.98988 0.94082 1.19665 0.94570 0.96452 1.03323 1.22886 0.99953 0.79917 0.97526 1.21145 0.93246 0.85740 0.97247 0.93695 0.93507 0.93859 0.92117 0.91884 0.90649 0.89969 0.88082 0.88061 0.80591 0.82387 0.84533 0.84950 0.89561 0.90088 0.95641 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.14 10.30 55.49 0.57 -25.56 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.05 10.28 -15.06 -0.15 -6.21 16 8 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.60 -14.39 3.41 -170.52 -0.58 -14.98 16 10 C 0.18 4.09 5.39 -2.83 -0.02 4.08 16 11 C -0.12 -2.03 6.40 -25.61 -0.16 -2.19 16 12 C -0.11 -1.63 1.06 -155.20 -0.16 -1.80 16 13 C 0.12 1.64 8.02 -7.46 -0.06 1.58 16 14 N -0.65 -8.88 3.70 -185.66 -0.69 -9.57 16 15 C 0.54 7.73 8.07 -10.99 -0.09 7.64 16 16 O -0.54 -9.83 16.81 5.55 0.09 -9.74 16 17 C -0.06 -0.65 6.05 -29.04 -0.18 -0.83 16 18 C -0.14 -1.65 4.81 -102.76 -0.49 -2.14 16 19 C 0.07 0.69 11.74 -16.69 -0.20 0.50 16 20 N -0.58 -5.76 6.05 -12.14 -0.07 -5.83 16 21 H 0.42 2.91 8.96 -40.82 -0.37 2.54 16 22 C 0.29 3.66 8.43 -155.69 -1.31 2.35 16 23 N -0.50 -6.38 10.39 -12.27 -0.13 -6.51 16 24 C 0.13 1.39 11.14 -17.50 -0.20 1.20 16 25 C -0.20 -2.05 10.10 -39.44 -0.40 -2.45 16 26 C -0.02 -0.28 10.22 -39.05 -0.40 -0.68 16 27 C -0.13 -1.74 6.37 -105.11 -0.67 -2.41 16 28 C 0.12 1.60 7.78 -7.31 -0.06 1.54 16 29 C 0.15 2.83 6.70 -3.21 -0.02 2.81 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.05 1.18 7.38 -51.93 -0.38 0.79 16 32 H 0.04 1.11 7.49 -51.93 -0.39 0.73 16 33 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.74 8.01 -51.92 -0.42 0.33 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -34.76 382.92 -11.31 -46.07 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.59 Total: 1.31 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -4.66 Total: 2.68 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.90 Total: -62.45 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.76 -11.31 -46.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073466018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.340 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds