Wall clock time and date at job start Tue Mar 31 2020 23:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00224 * 2 1 4 4 H 1.48508 * 109.46999 * 239.99940 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47314 * 120.00127 * 3 2 1 7 7 C 1.38818 * 119.99353 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99406 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00513 * 0.02562 * 7 2 1 10 10 C 1.47154 * 125.57791 * 359.96881 * 9 7 2 11 11 C 1.54632 * 107.37703 * 179.11026 * 10 9 7 12 12 C 1.53516 * 102.70095 * 339.39221 * 11 10 9 13 13 C 1.51786 * 116.99768 * 164.16711 * 12 11 10 14 14 N 1.47400 * 87.51914 * 92.92394 * 13 12 11 15 15 C 1.34770 * 135.85159 * 205.66141 * 14 13 12 16 16 O 1.21285 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00319 * 179.97438 * 15 14 13 18 18 C 1.50697 * 109.47391 * 180.02562 * 17 15 14 19 19 C 1.34224 * 126.56749 * 264.97215 * 18 17 15 20 20 N 1.36920 * 109.91258 * 179.97438 * 19 18 17 21 21 H 0.96996 * 124.98766 * 180.02562 * 20 19 18 22 22 C 1.37423 * 110.02382 * 0.02562 * 20 19 18 23 23 N 1.32654 * 133.19188 * 180.02562 * 22 20 19 24 24 C 1.31588 * 121.67268 * 180.02562 * 23 22 20 25 25 C 1.38663 * 121.58215 * 359.97283 * 24 23 22 26 26 C 1.38205 * 119.41253 * 0.02583 * 25 24 23 27 27 C 1.39695 * 118.03748 * 0.02562 * 26 25 24 28 28 C 1.47391 * 88.29412 * 25.91953 * 14 13 12 29 29 C 1.47756 * 125.58459 * 180.02562 * 9 7 2 30 30 H 0.97003 * 119.99543 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.86100 * 59.66268 * 10 9 7 32 32 H 1.08994 * 109.86766 * 298.56242 * 10 9 7 33 33 H 1.08994 * 110.76459 * 221.08420 * 11 10 9 34 34 H 1.09000 * 110.76106 * 97.68962 * 11 10 9 35 35 H 1.08999 * 113.54438 * 338.25896 * 13 12 11 36 36 H 1.09006 * 113.60473 * 207.58950 * 13 12 11 37 37 H 1.08994 * 109.46751 * 59.99737 * 17 15 14 38 38 H 1.09001 * 109.46999 * 300.00496 * 17 15 14 39 39 H 1.08000 * 125.04153 * 0.02562 * 19 18 17 40 40 H 1.07997 * 119.21176 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.29675 * 180.02562 * 25 24 23 42 42 H 1.07989 * 120.98091 * 179.72540 * 26 25 24 43 43 H 1.08992 * 113.54845 * 88.74234 * 28 14 13 44 44 H 1.09001 * 113.54289 * 219.42594 * 28 14 13 45 45 H 1.08992 * 110.40680 * 83.47521 * 29 9 7 46 46 H 1.09010 * 110.39772 * 321.05258 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1391 -2.5311 0.0007 11 6 -0.4553 -4.0446 -0.0223 12 6 0.8469 -4.6534 -0.5610 13 6 1.0376 -6.1477 -0.3750 14 7 0.4459 -6.3250 -1.7133 15 6 -0.2204 -7.3058 -2.3538 16 8 -0.4501 -8.3532 -1.7869 17 6 -0.6810 -7.1010 -3.7740 18 6 -1.3954 -8.3380 -4.2539 19 6 -0.8588 -9.3514 -4.9515 20 7 -1.8138 -10.2986 -5.2075 21 1 -1.6630 -11.1225 -5.6966 22 6 -3.0174 -9.9105 -4.6696 23 7 -4.2218 -10.4659 -4.6443 24 6 -5.2400 -9.8810 -4.0504 25 6 -5.1056 -8.6534 -3.4198 26 6 -3.8745 -8.0252 -3.4128 27 6 -2.8079 -8.6636 -4.0501 28 6 0.9056 -4.9653 -2.0484 29 6 1.9362 -3.7335 0.0016 30 1 -0.4849 0.8401 0.0004 31 1 -0.5580 -2.0517 -0.8840 32 1 -0.5553 -2.0794 0.9010 33 1 -1.2874 -4.2553 -0.6941 34 1 -0.6662 -4.4105 0.9825 35 1 0.4317 -6.5673 0.4281 36 1 2.0832 -6.4505 -0.3177 37 1 0.1819 -6.9089 -4.4116 38 1 -1.3606 -6.2498 -3.8163 39 1 0.1733 -9.4113 -5.2638 40 1 -6.2036 -10.3687 -4.0542 41 1 -5.9552 -8.1922 -2.9383 42 1 -3.7423 -7.0668 -2.9330 43 1 1.9144 -4.9357 -2.4599 44 1 0.1894 -4.3975 -2.6424 45 1 2.1982 -4.0312 1.0168 46 1 2.8173 -3.7513 -0.6400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073466018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:28 Heat of formation + Delta-G solvation = 87.875913 kcal Electronic energy + Delta-G solvation = -28724.166539 eV Core-core repulsion = 24808.783442 eV Total energy + Delta-G solvation = -3915.383097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.50820 -41.77801 -39.55904 -38.66770 -37.23486 -34.44396 -34.04041 -32.51085 -31.20262 -30.60676 -30.20904 -28.38267 -27.12761 -26.84359 -25.23262 -24.62823 -23.49664 -22.10162 -21.19017 -20.09015 -19.56407 -19.11455 -18.53818 -17.86626 -17.72701 -17.05386 -16.93853 -16.60925 -16.50558 -15.99571 -15.73058 -15.55589 -15.52463 -15.07028 -14.27288 -14.19005 -14.08627 -13.90701 -13.74840 -13.61756 -13.51724 -13.26342 -13.22889 -13.16033 -12.84495 -12.69276 -12.42721 -12.20359 -12.04349 -11.87231 -11.76800 -11.63102 -11.33715 -11.16544 -10.74690 -10.62766 -10.38077 -9.64115 -9.38905 -8.91094 -8.81647 -7.78206 -5.12611 0.06004 0.42998 1.51066 1.51881 1.53602 1.59646 1.71087 1.89226 2.06141 2.55191 2.94553 3.31894 3.43707 3.60705 3.61551 3.70331 3.75536 3.80623 3.88454 4.08028 4.13626 4.21291 4.26892 4.35426 4.49661 4.52656 4.59040 4.62464 4.67379 4.70226 4.77343 4.84231 4.89075 4.90941 5.00363 5.03019 5.09955 5.22727 5.24907 5.34819 5.47667 5.53763 5.58831 5.72121 5.84172 6.00528 6.25910 6.42949 6.81809 7.06683 7.16979 7.23205 7.84816 8.49122 9.32007 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020510 B = 0.002254 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.847482 B =12420.432783 C =12958.205526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.086 0.914 9 N -0.625 5.625 10 C 0.191 3.809 11 C -0.102 4.102 12 C -0.101 4.101 13 C 0.123 3.877 14 N -0.644 5.644 15 C 0.539 3.461 16 O -0.583 6.583 17 C -0.051 4.051 18 C -0.173 4.173 19 C 0.088 3.912 20 N -0.574 5.574 21 H 0.431 0.569 22 C 0.256 3.744 23 N -0.523 5.523 24 C 0.125 3.875 25 C -0.200 4.200 26 C -0.048 4.048 27 C -0.158 4.158 28 C 0.128 3.872 29 C 0.151 3.849 30 H 0.244 0.756 31 H 0.015 0.985 32 H 0.001 0.999 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.216 0.784 40 H 0.190 0.810 41 H 0.164 0.836 42 H 0.135 0.865 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.029 0.971 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -18.797 -11.560 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.104 0.896 9 N -0.352 5.352 10 C 0.065 3.935 11 C -0.140 4.140 12 C -0.103 4.103 13 C 0.001 3.999 14 N -0.379 5.379 15 C 0.331 3.669 16 O -0.464 6.464 17 C -0.091 4.091 18 C -0.181 4.181 19 C -0.039 4.039 20 N -0.181 5.181 21 H 0.271 0.729 22 C 0.023 3.977 23 N -0.237 5.237 24 C -0.040 4.040 25 C -0.221 4.221 26 C -0.075 4.075 27 C -0.165 4.165 28 C 0.006 3.994 29 C 0.026 3.974 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.019 0.981 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.125 0.875 39 H 0.232 0.768 40 H 0.207 0.793 41 H 0.181 0.819 42 H 0.153 0.847 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.047 0.953 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.270 -20.244 -11.895 23.707 hybrid contribution 0.255 1.645 0.652 1.788 sum -3.015 -18.599 -11.243 21.942 Atomic orbital electron populations 1.70178 1.06257 1.25102 1.58663 1.25597 0.96509 1.00883 1.03064 0.85208 0.77095 0.79152 0.78209 1.20065 1.22621 1.20633 1.19423 0.91084 0.83553 1.42304 0.89594 1.44824 1.02191 1.01096 1.87056 1.20909 0.83952 0.90963 0.97632 1.22244 0.95880 0.95338 1.00548 1.22016 0.97166 0.93999 0.97115 1.22741 0.99583 0.92263 0.85352 1.49875 1.54875 1.16425 1.16677 1.20771 0.76534 0.80962 0.88667 1.90686 1.58542 1.27816 1.69310 1.19880 1.01917 0.96147 0.91107 1.19731 0.91670 0.99316 1.07356 1.22220 0.95063 0.87354 0.99264 1.41528 1.05466 1.21732 1.49407 0.72911 1.18682 0.88004 0.92495 0.98539 1.66506 0.98270 1.36744 1.22182 1.23008 0.96512 0.92601 0.91923 1.22188 0.98539 0.97637 1.03710 1.21252 0.91759 0.99584 0.94874 1.20052 0.95727 0.96978 1.03767 1.22917 1.01373 0.79334 0.95755 1.21312 0.94472 0.83674 0.97981 0.94632 0.96673 0.98080 0.90962 0.91440 0.91270 0.87629 0.84930 0.87547 0.76777 0.79310 0.81892 0.84668 0.87173 0.89869 0.95271 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.82 10.30 21.65 0.22 -55.60 16 2 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 3 Si 0.97 44.27 29.55 68.60 2.03 46.30 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.23 -12.39 10.28 84.04 0.86 -11.52 16 8 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -29.72 3.41 -693.41 -2.36 -32.08 16 10 C 0.19 8.91 5.39 86.81 0.47 9.38 16 11 C -0.10 -3.51 6.40 31.32 0.20 -3.31 16 12 C -0.10 -2.94 1.06 -52.61 -0.06 -2.99 16 13 C 0.12 3.09 8.02 83.68 0.67 3.76 16 14 N -0.64 -16.01 3.70 -859.68 -3.18 -19.18 16 15 C 0.54 14.38 8.07 87.66 0.71 15.08 16 16 O -0.58 -20.62 16.81 -3.05 -0.05 -20.67 16 17 C -0.05 -0.98 6.05 29.10 0.18 -0.80 16 18 C -0.17 -3.81 4.81 -18.66 -0.09 -3.90 16 19 C 0.09 1.47 11.74 82.98 0.97 2.45 16 20 N -0.57 -10.64 6.05 -192.33 -1.16 -11.80 16 21 H 0.43 5.38 8.96 -92.71 -0.83 4.55 16 22 C 0.26 6.46 8.43 133.93 1.13 7.59 16 23 N -0.52 -13.06 10.39 -192.74 -2.00 -15.06 16 24 C 0.12 2.48 11.14 84.83 0.95 3.42 16 25 C -0.20 -3.87 10.10 22.36 0.23 -3.65 16 26 C -0.05 -1.14 10.22 22.61 0.23 -0.91 16 27 C -0.16 -4.09 6.37 -20.18 -0.13 -4.22 16 28 C 0.13 3.03 7.78 83.77 0.65 3.68 16 29 C 0.15 5.31 6.70 86.23 0.58 5.88 16 30 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.02 0.79 7.38 -2.39 -0.02 0.77 16 32 H 0.00 0.05 7.49 -2.39 -0.02 0.03 16 33 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 36 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.14 2.93 8.06 -2.92 -0.02 2.91 16 43 H 0.11 2.16 8.06 -2.39 -0.02 2.14 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.90 8.01 -2.38 -0.02 1.88 16 Total: -1.00 -78.18 382.92 1.68 -76.50 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.17 Total: 14.90 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 8.01 Total: 16.70 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -8.48 Total: -133.73 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -78.18 1.68 -76.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073466018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.379 kcal (2) G-P(sol) polarization free energy of solvation -78.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds