Wall clock time and date at job start Tue Mar 31 2020 23:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48494 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46785 * 299.99442 * 3 2 1 6 6 H 1.48500 * 109.47370 * 59.99474 * 3 2 1 7 7 C 1.38812 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99941 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.46588 * 125.30444 * 179.97438 * 9 7 2 11 11 C 1.53261 * 108.16025 * 177.88955 * 10 9 7 12 12 H 1.09000 * 113.08710 * 222.46704 * 11 10 9 13 13 C 1.54795 * 109.74971 * 95.76077 * 11 10 9 14 14 C 1.55157 * 101.40410 * 212.12568 * 13 11 10 15 15 N 1.47347 * 104.78135 * 37.52445 * 14 13 11 16 16 C 1.34782 * 125.52829 * 156.49076 * 15 14 13 17 17 O 1.21279 * 119.99809 * 179.69080 * 16 15 14 18 18 C 1.50694 * 119.99727 * 359.68626 * 16 15 14 19 19 C 1.50703 * 109.46899 * 180.02562 * 18 16 15 20 20 C 1.39687 * 119.13474 * 270.01660 * 19 18 16 21 21 C 1.35629 * 121.81789 * 179.97438 * 20 19 18 22 22 C 1.41158 * 119.59392 * 0.04929 * 21 20 19 23 23 N 1.32064 * 134.68021 * 179.97438 * 22 21 20 24 24 N 1.39958 * 108.96017 * 179.97438 * 23 22 21 25 25 H 0.97001 * 125.02179 * 179.97438 * 24 23 22 26 26 C 1.33984 * 109.95727 * 359.97438 * 24 23 22 27 27 C 1.38253 * 107.90394 * 0.02562 * 26 24 23 28 28 C 1.35652 * 119.13788 * 90.00002 * 19 18 16 29 29 C 1.47215 * 108.94611 * 336.21931 * 15 14 13 30 30 H 1.08996 * 112.29272 * 236.48058 * 29 15 14 31 31 C 1.46606 * 125.30852 * 359.97438 * 9 7 2 32 32 H 0.97002 * 119.99294 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.73437 * 58.19761 * 10 9 7 34 34 H 1.09004 * 109.71536 * 297.56421 * 10 9 7 35 35 H 1.08996 * 111.02256 * 330.34838 * 13 11 10 36 36 H 1.09005 * 111.01786 * 94.23982 * 13 11 10 37 37 H 1.08993 * 110.48402 * 278.66348 * 14 13 11 38 38 H 1.08999 * 110.32298 * 156.30095 * 14 13 11 39 39 H 1.08991 * 109.47447 * 60.00372 * 18 16 15 40 40 H 1.09008 * 109.47446 * 299.99799 * 18 16 15 41 41 H 1.07997 * 119.08873 * 0.02562 * 20 19 18 42 42 H 1.08002 * 120.20657 * 180.02562 * 21 20 19 43 43 H 1.07994 * 126.04979 * 179.97438 * 26 24 23 44 44 H 1.07995 * 120.23176 * 0.04663 * 28 19 18 45 45 H 1.09002 * 109.91201 * 78.45883 * 31 9 7 46 46 H 1.08994 * 109.91386 * 317.17314 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.9378 -3.7199 0.0005 11 6 0.8151 -4.7618 0.0542 12 1 1.0276 -5.5843 0.7372 13 6 0.4829 -5.2469 -1.3778 14 6 -1.0361 -5.5398 -1.2578 15 7 -1.5559 -4.4761 -0.3805 16 6 -2.8330 -4.0472 -0.3417 17 8 -3.1534 -3.1651 0.4265 18 6 -3.8628 -4.6637 -1.2529 19 6 -5.2000 -4.0111 -1.0139 20 6 -6.0582 -4.5511 -0.0530 21 6 -7.2734 -4.0076 0.2066 22 6 -7.6933 -2.8652 -0.5085 23 7 -8.7787 -2.1128 -0.5023 24 7 -8.6302 -1.0927 -1.4489 25 1 -9.2905 -0.4075 -1.6372 26 6 -7.4412 -1.2024 -2.0567 27 6 -6.7888 -2.2968 -1.5200 28 6 -5.5386 -2.9146 -1.7372 29 6 -0.4553 -3.9622 0.4513 30 1 -0.6747 -4.0324 1.5167 31 6 -0.1343 -2.5236 0.0005 32 1 -0.4849 0.8401 -0.0004 33 1 2.5828 -3.8284 0.8725 34 1 2.5228 -3.8556 -0.9091 35 1 0.6768 -4.4639 -2.1107 36 1 1.0361 -6.1540 -1.6214 37 1 -1.2015 -6.5180 -0.8065 38 1 -1.5101 -5.4883 -2.2379 39 1 -3.9373 -5.7314 -1.0473 40 1 -3.5660 -4.5134 -2.2910 41 1 -5.7451 -5.4250 0.4989 42 1 -7.9160 -4.4462 0.9556 43 1 -7.0602 -0.5516 -2.8298 44 1 -4.8566 -2.5176 -2.4744 45 1 -0.5229 -2.3537 -1.0036 46 1 -0.5735 -1.8095 0.6972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076033104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:50 Heat of formation + Delta-G solvation = 100.181745 kcal Electronic energy + Delta-G solvation = -29364.862155 eV Core-core repulsion = 25450.012680 eV Total energy + Delta-G solvation = -3914.849476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.26555 -40.03257 -38.25811 -36.89373 -34.86640 -32.73800 -32.19998 -31.11730 -30.59365 -30.14658 -28.64913 -27.22954 -26.22265 -24.48691 -23.93422 -22.58911 -21.35113 -20.70963 -20.33789 -19.52785 -18.52527 -18.22454 -16.99826 -16.72267 -16.52599 -15.79492 -15.36478 -14.91643 -14.86946 -14.66105 -14.43907 -14.01255 -13.84678 -13.46982 -13.28704 -13.08825 -12.80421 -12.60140 -12.12852 -11.99586 -11.84767 -11.77913 -11.62541 -11.47642 -11.37863 -11.15356 -11.00367 -10.78215 -10.40413 -10.32362 -10.27689 -10.11457 -9.98746 -9.72627 -9.65830 -9.29769 -8.71824 -8.56043 -8.08452 -7.54685 -6.77452 -5.58765 -3.00989 0.62538 1.82154 2.43442 2.62992 3.15197 3.39557 3.43109 3.47952 3.51075 3.92435 4.23552 4.53237 4.59256 4.77358 4.84258 4.86525 5.05559 5.12332 5.20017 5.29971 5.36844 5.45561 5.50743 5.56324 5.57792 5.62558 5.68696 5.71159 5.77734 5.85091 5.97349 6.07453 6.16632 6.27634 6.39472 6.43910 6.48835 6.57933 6.67302 6.73459 6.75081 6.89902 6.93756 6.98349 7.53912 7.61397 7.69476 7.97148 8.08214 8.43106 8.72532 9.28655 9.89652 10.51921 11.45253 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003267 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.659759 B = 8568.796656 C =10546.583967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.086 0.914 13 C -0.122 4.122 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.523 3.477 17 O -0.517 6.517 18 C -0.092 4.092 19 C -0.099 4.099 20 C -0.052 4.052 21 C -0.112 4.112 22 C 0.108 3.892 23 N -0.315 5.315 24 N -0.430 5.430 25 H 0.442 0.558 26 C 0.083 3.917 27 C -0.201 4.201 28 C -0.024 4.024 29 C 0.115 3.885 30 H 0.080 0.920 31 C 0.167 3.833 32 H 0.252 0.748 33 H 0.022 0.978 34 H 0.025 0.975 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.188 0.812 44 H 0.124 0.876 45 H 0.019 0.981 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.265 -12.248 -6.930 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.130 4.130 12 H 0.104 0.896 13 C -0.160 4.160 14 C -0.021 4.021 15 N -0.347 5.347 16 C 0.310 3.690 17 O -0.391 6.391 18 C -0.132 4.132 19 C -0.101 4.101 20 C -0.074 4.074 21 C -0.134 4.134 22 C -0.045 4.045 23 N -0.144 5.144 24 N -0.130 5.130 25 H 0.285 0.715 26 C -0.074 4.074 27 C -0.211 4.211 28 C -0.045 4.045 29 C 0.011 3.989 30 H 0.098 0.902 31 C 0.042 3.958 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.205 0.795 44 H 0.142 0.858 45 H 0.037 0.963 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.774 -11.323 -5.957 18.799 hybrid contribution 1.004 1.198 -0.573 1.665 sum -12.769 -10.125 -6.530 17.556 Atomic orbital electron populations 1.69955 1.04717 1.24733 1.56590 1.24843 0.95683 0.97704 1.02159 0.86058 0.78650 0.83902 0.77225 1.20514 1.21824 1.21738 1.19064 0.90432 0.82308 1.44101 0.90373 1.44192 1.01704 0.99895 1.87131 1.20970 0.93386 0.85621 0.98122 1.22864 0.95976 0.97852 0.96263 0.89565 1.22833 0.94037 1.01578 0.97598 1.22323 0.95038 0.90652 0.94131 1.48588 1.08059 1.37968 1.40113 1.20131 0.81405 0.83084 0.84379 1.90780 1.79114 1.29669 1.39562 1.20621 0.91398 1.00636 1.00531 1.18641 0.95012 0.97754 0.98653 1.20489 0.92545 0.98872 0.95509 1.19754 0.97415 0.94840 1.01344 1.20952 0.91494 0.95916 0.96186 1.77625 1.22014 1.02333 1.12391 1.46265 1.14549 1.24115 1.28090 0.71458 1.22713 0.87218 0.98568 0.98870 1.19576 0.98312 0.99799 1.03371 1.20064 0.92951 0.93132 0.98324 1.22927 0.83956 0.97670 0.94305 0.90199 1.21631 0.84095 0.90155 0.99943 0.93756 0.95964 0.95757 0.89975 0.90515 0.91838 0.91126 0.88557 0.88458 0.85808 0.85545 0.79505 0.85824 0.96299 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.91 10.17 55.49 0.56 -27.34 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.23 -6.53 10.25 -15.06 -0.15 -6.69 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.63 3.37 -172.22 -0.58 -16.21 16 10 C 0.15 2.95 6.65 -3.86 -0.03 2.93 16 11 C -0.11 -1.81 3.91 -88.33 -0.34 -2.15 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -1.64 6.25 -24.64 -0.15 -1.80 16 14 C 0.10 1.24 6.68 -2.44 -0.02 1.22 16 15 N -0.61 -10.26 2.85 -161.54 -0.46 -10.72 16 16 C 0.52 9.16 7.66 -10.99 -0.08 9.07 16 17 O -0.52 -11.69 16.15 5.56 0.09 -11.60 16 18 C -0.09 -1.13 4.78 -29.04 -0.14 -1.27 16 19 C -0.10 -1.35 4.33 -105.00 -0.45 -1.81 16 20 C -0.05 -0.67 9.51 -39.97 -0.38 -1.05 16 21 C -0.11 -1.51 10.08 -39.41 -0.40 -1.91 16 22 C 0.11 1.60 7.49 -83.05 -0.62 0.98 16 23 N -0.31 -4.44 12.70 33.25 0.42 -4.02 16 24 N -0.43 -4.35 7.18 30.84 0.22 -4.13 16 25 H 0.44 2.61 8.96 -182.70 -1.64 0.97 16 26 C 0.08 0.85 12.08 -16.61 -0.20 0.65 16 27 C -0.20 -2.76 6.33 -105.19 -0.67 -3.43 16 28 C -0.02 -0.34 9.66 -39.41 -0.38 -0.72 16 29 C 0.12 2.28 3.88 -65.74 -0.25 2.03 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 31 C 0.17 4.26 4.80 -3.39 -0.02 4.25 16 32 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 35 H 0.08 1.30 7.88 -51.93 -0.41 0.89 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.71 7.49 -51.93 -0.39 0.33 16 39 H 0.10 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.10 1.02 7.77 -51.92 -0.40 0.62 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 46 H 0.09 2.86 6.22 -51.93 -0.32 2.54 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -38.27 374.25 -11.26 -49.53 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.75 Total: 1.34 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -4.39 Total: -0.01 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.17 Total: -62.41 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.27 -11.26 -49.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076033104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.707 kcal (2) G-P(sol) polarization free energy of solvation -38.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds