Wall clock time and date at job start Tue Mar 31 2020 23:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48494 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46785 * 299.99442 * 3 2 1 6 6 H 1.48500 * 109.47370 * 59.99474 * 3 2 1 7 7 C 1.38812 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99941 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.46588 * 125.30444 * 179.97438 * 9 7 2 11 11 C 1.53261 * 108.16025 * 177.88955 * 10 9 7 12 12 H 1.09000 * 113.08710 * 222.46704 * 11 10 9 13 13 C 1.54795 * 109.74971 * 95.76077 * 11 10 9 14 14 C 1.55157 * 101.40410 * 212.12568 * 13 11 10 15 15 N 1.47347 * 104.78135 * 37.52445 * 14 13 11 16 16 C 1.34782 * 125.52829 * 156.49076 * 15 14 13 17 17 O 1.21279 * 119.99809 * 179.69080 * 16 15 14 18 18 C 1.50694 * 119.99727 * 359.68626 * 16 15 14 19 19 C 1.50703 * 109.46899 * 180.02562 * 18 16 15 20 20 C 1.39687 * 119.13474 * 270.01660 * 19 18 16 21 21 C 1.35629 * 121.81789 * 179.97438 * 20 19 18 22 22 C 1.41158 * 119.59392 * 0.04929 * 21 20 19 23 23 N 1.32064 * 134.68021 * 179.97438 * 22 21 20 24 24 N 1.39958 * 108.96017 * 179.97438 * 23 22 21 25 25 H 0.97001 * 125.02179 * 179.97438 * 24 23 22 26 26 C 1.33984 * 109.95727 * 359.97438 * 24 23 22 27 27 C 1.38253 * 107.90394 * 0.02562 * 26 24 23 28 28 C 1.35652 * 119.13788 * 90.00002 * 19 18 16 29 29 C 1.47215 * 108.94611 * 336.21931 * 15 14 13 30 30 H 1.08996 * 112.29272 * 236.48058 * 29 15 14 31 31 C 1.46606 * 125.30852 * 359.97438 * 9 7 2 32 32 H 0.97002 * 119.99294 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.73437 * 58.19761 * 10 9 7 34 34 H 1.09004 * 109.71536 * 297.56421 * 10 9 7 35 35 H 1.08996 * 111.02256 * 330.34838 * 13 11 10 36 36 H 1.09005 * 111.01786 * 94.23982 * 13 11 10 37 37 H 1.08993 * 110.48402 * 278.66348 * 14 13 11 38 38 H 1.08999 * 110.32298 * 156.30095 * 14 13 11 39 39 H 1.08991 * 109.47447 * 60.00372 * 18 16 15 40 40 H 1.09008 * 109.47446 * 299.99799 * 18 16 15 41 41 H 1.07997 * 119.08873 * 0.02562 * 20 19 18 42 42 H 1.08002 * 120.20657 * 180.02562 * 21 20 19 43 43 H 1.07994 * 126.04979 * 179.97438 * 26 24 23 44 44 H 1.07995 * 120.23176 * 0.04663 * 28 19 18 45 45 H 1.09002 * 109.91201 * 78.45883 * 31 9 7 46 46 H 1.08994 * 109.91386 * 317.17314 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.9378 -3.7199 0.0005 11 6 0.8151 -4.7618 0.0542 12 1 1.0276 -5.5843 0.7372 13 6 0.4829 -5.2469 -1.3778 14 6 -1.0361 -5.5398 -1.2578 15 7 -1.5559 -4.4761 -0.3805 16 6 -2.8330 -4.0472 -0.3417 17 8 -3.1534 -3.1651 0.4265 18 6 -3.8628 -4.6637 -1.2529 19 6 -5.2000 -4.0111 -1.0139 20 6 -6.0582 -4.5511 -0.0530 21 6 -7.2734 -4.0076 0.2066 22 6 -7.6933 -2.8652 -0.5085 23 7 -8.7787 -2.1128 -0.5023 24 7 -8.6302 -1.0927 -1.4489 25 1 -9.2905 -0.4075 -1.6372 26 6 -7.4412 -1.2024 -2.0567 27 6 -6.7888 -2.2968 -1.5200 28 6 -5.5386 -2.9146 -1.7372 29 6 -0.4553 -3.9622 0.4513 30 1 -0.6747 -4.0324 1.5167 31 6 -0.1343 -2.5236 0.0005 32 1 -0.4849 0.8401 -0.0004 33 1 2.5828 -3.8284 0.8725 34 1 2.5228 -3.8556 -0.9091 35 1 0.6768 -4.4639 -2.1107 36 1 1.0361 -6.1540 -1.6214 37 1 -1.2015 -6.5180 -0.8065 38 1 -1.5101 -5.4883 -2.2379 39 1 -3.9373 -5.7314 -1.0473 40 1 -3.5660 -4.5134 -2.2910 41 1 -5.7451 -5.4250 0.4989 42 1 -7.9160 -4.4462 0.9556 43 1 -7.0602 -0.5516 -2.8298 44 1 -4.8566 -2.5176 -2.4744 45 1 -0.5229 -2.3537 -1.0036 46 1 -0.5735 -1.8095 0.6972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076033104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:48 Heat of formation + Delta-G solvation = 73.552484 kcal Electronic energy + Delta-G solvation = -29366.016887 eV Core-core repulsion = 25450.012680 eV Total energy + Delta-G solvation = -3916.004207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.19548 -41.40427 -39.57517 -38.05190 -36.56342 -34.13340 -33.61883 -32.25896 -32.00790 -31.17659 -30.26279 -28.58131 -27.55508 -26.37549 -24.96466 -23.78544 -22.50478 -22.03968 -21.65425 -20.88208 -19.89524 -19.10275 -18.89922 -18.00599 -17.64984 -17.18733 -16.58792 -16.43445 -15.97690 -15.92725 -15.76484 -15.33342 -15.03944 -14.87981 -14.78758 -14.33213 -14.03434 -13.97085 -13.67415 -13.40714 -13.18886 -12.98246 -12.87773 -12.82200 -12.75088 -12.61094 -12.47372 -12.31886 -12.09865 -11.85707 -11.65658 -11.42139 -11.34957 -11.29687 -11.26926 -10.75540 -10.68853 -9.67497 -9.48294 -8.89593 -8.52523 -7.78179 -5.23452 -0.29793 0.81724 1.42396 1.44754 1.47618 1.55253 1.84692 1.86652 2.16165 2.48482 2.90028 3.30660 3.32194 3.50225 3.70926 3.76761 3.82295 3.86909 4.05938 4.15701 4.21894 4.25344 4.40875 4.46584 4.48050 4.55309 4.57246 4.62503 4.65772 4.73999 4.75942 4.85701 4.93171 4.99918 5.17394 5.23155 5.25585 5.31654 5.46526 5.49120 5.50720 5.54780 5.66602 5.75864 5.84910 5.96128 6.26727 6.27277 6.59433 6.78401 7.08808 7.41324 7.80259 8.40466 9.23776 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003267 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.659759 B = 8568.796656 C =10546.583967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.626 5.626 10 C 0.136 3.864 11 C -0.094 4.094 12 H 0.127 0.873 13 C -0.116 4.116 14 C 0.099 3.901 15 N -0.613 5.613 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.076 4.076 19 C -0.118 4.118 20 C -0.054 4.054 21 C -0.133 4.133 22 C 0.084 3.916 23 N -0.351 5.351 24 N -0.415 5.415 25 H 0.459 0.541 26 C 0.107 3.893 27 C -0.239 4.239 28 C -0.035 4.035 29 C 0.118 3.882 30 H 0.062 0.938 31 C 0.188 3.812 32 H 0.241 0.759 33 H 0.027 0.973 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.232 0.768 44 H 0.129 0.871 45 H -0.019 1.019 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 -14.812 -8.637 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.370 4.370 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.113 4.113 12 H 0.145 0.855 13 C -0.153 4.153 14 C -0.022 4.022 15 N -0.347 5.347 16 C 0.303 3.697 17 O -0.463 6.463 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.076 4.076 21 C -0.154 4.154 22 C -0.068 4.068 23 N -0.181 5.181 24 N -0.117 5.117 25 H 0.307 0.693 26 C -0.052 4.052 27 C -0.249 4.249 28 C -0.056 4.056 29 C 0.013 3.987 30 H 0.080 0.920 31 C 0.062 3.938 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.155 0.845 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.248 0.752 44 H 0.147 0.853 45 H -0.001 1.001 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.745 -13.955 -7.692 20.405 hybrid contribution 0.724 2.072 -0.065 2.196 sum -12.022 -11.883 -7.758 18.598 Atomic orbital electron populations 1.70296 1.06509 1.24655 1.58343 1.25759 0.96476 1.01410 1.02691 0.84987 0.78402 0.79270 0.76562 1.18288 1.21895 1.22307 1.19531 0.91137 0.83623 1.42674 0.89440 1.44521 1.02238 1.01586 1.86902 1.21262 0.94939 0.84063 0.98607 1.22904 0.91835 0.97179 0.99400 0.85535 1.22851 0.95668 1.02470 0.94339 1.22722 0.93862 0.90621 0.94995 1.48720 1.07218 1.38662 1.40116 1.21178 0.82258 0.82167 0.84057 1.90754 1.80344 1.32682 1.42477 1.20636 0.88626 1.02154 1.00107 1.18898 0.95811 0.98231 0.99080 1.20774 0.92157 0.99427 0.95247 1.20033 0.98194 0.95153 1.02023 1.21299 0.92047 0.96596 0.96907 1.77530 1.22516 1.03707 1.14312 1.46305 1.15004 1.23556 1.26852 0.69312 1.23390 0.86258 0.97390 0.98157 1.19974 0.98840 1.01539 1.04526 1.20311 0.93233 0.93353 0.98682 1.22554 0.87189 0.94984 0.94019 0.91957 1.21123 0.83773 0.92812 0.96130 0.94903 0.95479 0.94553 0.93009 0.85837 0.87637 0.88383 0.84513 0.86173 0.83597 0.84436 0.75191 0.85276 1.00143 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.64 10.17 21.65 0.22 -61.42 16 2 C -0.07 -4.24 5.48 84.86 0.47 -3.77 16 3 Si 0.98 47.68 29.55 68.60 2.03 49.71 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 7 C -0.24 -13.96 10.25 84.03 0.86 -13.10 16 8 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 9 N -0.63 -33.37 3.37 -698.78 -2.36 -35.72 16 10 C 0.14 5.38 6.65 86.45 0.58 5.95 16 11 C -0.09 -2.83 3.91 -9.31 -0.04 -2.86 16 12 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 13 C -0.12 -2.62 6.25 31.95 0.20 -2.42 16 14 C 0.10 1.94 6.68 86.96 0.58 2.52 16 15 N -0.61 -19.76 2.85 -783.38 -2.23 -21.99 16 16 C 0.51 17.91 7.66 87.65 0.67 18.59 16 17 O -0.58 -27.85 16.15 -3.03 -0.05 -27.90 16 18 C -0.08 -1.71 4.78 29.10 0.14 -1.57 16 19 C -0.12 -3.19 4.33 -20.11 -0.09 -3.28 16 20 C -0.05 -1.38 9.51 22.02 0.21 -1.17 16 21 C -0.13 -3.69 10.08 22.38 0.23 -3.46 16 22 C 0.08 2.56 7.49 42.16 0.32 2.87 16 23 N -0.35 -10.07 12.70 -48.70 -0.62 -10.69 16 24 N -0.42 -8.09 7.18 -56.35 -0.40 -8.49 16 25 H 0.46 4.86 8.96 -213.41 -1.91 2.95 16 26 C 0.11 2.07 12.08 84.37 1.02 3.09 16 27 C -0.24 -6.63 6.33 -20.23 -0.13 -6.76 16 28 C -0.04 -0.99 9.66 22.38 0.22 -0.78 16 29 C 0.12 4.70 3.88 46.02 0.18 4.88 16 30 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 31 C 0.19 10.11 4.80 86.75 0.42 10.53 16 32 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.37 7.74 -2.38 -0.02 1.35 16 35 H 0.05 1.51 7.88 -2.39 -0.02 1.49 16 36 H 0.12 1.73 8.14 -2.38 -0.02 1.72 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.46 7.49 -2.39 -0.02 1.44 16 39 H 0.14 1.95 8.07 -2.39 -0.02 1.93 16 40 H 0.12 2.15 7.77 -2.38 -0.02 2.14 16 41 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.23 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 45 H -0.02 -1.16 7.94 -2.39 -0.02 -1.18 16 46 H 0.03 2.22 6.22 -2.39 -0.01 2.21 16 Total: -1.00 -94.05 374.25 1.50 -92.55 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.90 Total: 14.70 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.82 Total: 9.25 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -5.39 Total: -138.31 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -94.05 1.50 -92.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076033104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.100 kcal (2) G-P(sol) polarization free energy of solvation -94.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds