Wall clock time and date at job start Tue Mar 31 2020 23:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48500 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47240 * 299.99395 * 3 2 1 6 6 H 1.48493 * 109.47455 * 59.99923 * 3 2 1 7 7 C 1.38815 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99672 * 0.02562 * 7 2 1 10 10 C 1.46580 * 125.30332 * 180.02562 * 9 7 2 11 11 C 1.53264 * 108.15788 * 177.89063 * 10 9 7 12 12 H 1.09000 * 112.58102 * 222.76154 * 11 10 9 13 13 C 1.54794 * 109.75196 * 95.75892 * 11 10 9 14 14 C 1.55168 * 101.39796 * 212.11713 * 13 11 10 15 15 N 1.47349 * 104.77824 * 37.53689 * 14 13 11 16 16 C 1.34775 * 125.52792 * 156.46892 * 15 14 13 17 17 O 1.21277 * 119.99982 * 179.69175 * 16 15 14 18 18 C 1.50703 * 119.99676 * 359.69309 * 16 15 14 19 19 C 1.50709 * 109.46649 * 180.02562 * 18 16 15 20 20 C 1.39677 * 119.09429 * 90.00265 * 19 18 16 21 21 C 1.35649 * 121.72814 * 180.02562 * 20 19 18 22 22 C 1.41135 * 119.53982 * 0.02562 * 21 20 19 23 23 C 1.38241 * 134.82192 * 179.68380 * 22 21 20 24 24 N 1.33994 * 107.90407 * 179.97438 * 23 22 21 25 25 H 0.96996 * 125.01912 * 180.14521 * 24 23 22 26 26 N 1.39949 * 109.95708 * 0.36175 * 24 23 22 27 27 C 1.32064 * 108.95929 * 359.77257 * 26 24 23 28 28 C 1.35642 * 119.08710 * 270.01991 * 19 18 16 29 29 C 1.47212 * 108.93904 * 336.20561 * 15 14 13 30 30 H 1.09003 * 112.28739 * 236.48292 * 29 15 14 31 31 C 1.46603 * 125.30543 * 0.02562 * 9 7 2 32 32 H 0.96995 * 120.00380 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.73975 * 58.19518 * 10 9 7 34 34 H 1.09008 * 109.73511 * 297.57191 * 10 9 7 35 35 H 1.08997 * 111.02099 * 330.34677 * 13 11 10 36 36 H 1.09005 * 111.02330 * 94.19716 * 13 11 10 37 37 H 1.09004 * 110.49030 * 278.67671 * 14 13 11 38 38 H 1.09000 * 110.32679 * 156.31313 * 14 13 11 39 39 H 1.08996 * 109.47359 * 60.00246 * 18 16 15 40 40 H 1.08992 * 109.47491 * 299.99734 * 18 16 15 41 41 H 1.08004 * 119.13487 * 0.02562 * 20 19 18 42 42 H 1.07998 * 120.23175 * 180.02562 * 21 20 19 43 43 H 1.07993 * 126.04643 * 0.02620 * 23 22 21 44 44 H 1.07998 * 120.20735 * 0.02562 * 28 19 18 45 45 H 1.08995 * 109.91796 * 78.45310 * 31 9 7 46 46 H 1.09000 * 109.91314 * 317.16670 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9380 -3.7198 0.0016 11 6 0.8152 -4.7618 0.0548 12 1 1.0334 -5.5773 0.7444 13 6 0.4841 -5.2475 -1.3771 14 6 -1.0350 -5.5405 -1.2579 15 7 -1.5554 -4.4763 -0.3817 16 6 -2.8325 -4.0473 -0.3442 17 8 -3.1535 -3.1648 0.4232 18 6 -3.8617 -4.6643 -1.2560 19 6 -5.1990 -4.0114 -1.0184 20 6 -5.5460 -2.8829 -1.7647 21 6 -6.7352 -2.2529 -1.5944 22 6 -7.6520 -2.7433 -0.6399 23 6 -8.9098 -2.3622 -0.2113 24 7 -9.2995 -3.2229 0.7388 25 1 -10.1472 -3.1866 1.2090 26 7 -8.3008 -4.1789 0.9562 27 6 -7.2865 -3.9312 0.1475 28 6 -6.0324 -4.5358 -0.0855 29 6 -0.4554 -3.9622 0.4506 30 1 -0.6756 -4.0318 1.5159 31 6 -0.1342 -2.5236 -0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 2.5823 -3.8280 0.8740 34 1 2.5239 -3.8562 -0.9074 35 1 0.6785 -4.4648 -2.1103 36 1 1.0380 -6.1543 -1.6204 37 1 -1.2006 -6.5186 -0.8061 38 1 -1.5085 -5.4898 -2.2384 39 1 -3.9364 -5.7320 -1.0497 40 1 -3.5640 -4.5148 -2.2938 41 1 -4.8492 -2.5018 -2.4966 42 1 -6.9788 -1.3822 -2.1850 43 1 -9.4781 -1.5204 -0.5781 44 1 -5.7373 -5.4091 0.4773 45 1 -0.5221 -2.3541 -1.0049 46 1 -0.5739 -1.8093 0.6956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076514946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:05 Heat of formation + Delta-G solvation = 100.766175 kcal Electronic energy + Delta-G solvation = -29307.873584 eV Core-core repulsion = 25393.049451 eV Total energy + Delta-G solvation = -3914.824133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.28374 -40.04070 -38.27543 -36.89754 -34.86069 -32.53702 -32.18219 -31.87498 -30.58149 -29.03543 -28.75315 -27.77963 -26.44473 -24.47914 -23.60478 -22.53928 -21.47631 -20.74092 -20.33261 -19.54240 -18.54776 -18.11846 -16.99795 -16.73847 -16.53824 -15.77648 -15.42003 -15.00301 -14.92634 -14.66604 -14.42181 -14.02197 -13.89402 -13.48920 -13.30020 -12.93826 -12.74732 -12.56672 -12.11547 -12.00445 -11.90268 -11.70481 -11.62850 -11.48526 -11.45161 -11.14089 -10.99027 -10.76667 -10.38569 -10.34038 -10.32200 -10.10836 -9.97301 -9.71354 -9.64398 -9.35249 -8.61273 -8.54177 -8.08564 -7.61489 -6.75916 -5.56960 -2.99330 0.60038 1.81408 2.42792 2.60214 3.13850 3.38087 3.44662 3.49345 3.52610 3.92419 4.21373 4.51310 4.54814 4.76755 4.84957 4.86224 5.04092 5.14098 5.21961 5.22086 5.31756 5.48751 5.52440 5.55455 5.60303 5.64113 5.66406 5.70858 5.76074 5.86189 5.98513 6.08528 6.17811 6.28555 6.40368 6.44132 6.53996 6.58747 6.68035 6.72691 6.74598 6.89728 6.94669 6.95958 7.52998 7.62428 7.70866 7.98050 8.07939 8.44566 8.70746 9.30239 9.91209 10.53484 11.47019 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003037 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.353645 B = 9218.082561 C =10835.936200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.086 0.914 13 C -0.122 4.122 14 C 0.101 3.899 15 N -0.611 5.611 16 C 0.525 3.475 17 O -0.516 6.516 18 C -0.101 4.101 19 C -0.012 4.012 20 C -0.130 4.130 21 C -0.048 4.048 22 C -0.203 4.203 23 C 0.076 3.924 24 N -0.431 5.431 25 H 0.441 0.559 26 N -0.312 5.312 27 C 0.111 3.889 28 C -0.096 4.096 29 C 0.115 3.885 30 H 0.080 0.920 31 C 0.167 3.833 32 H 0.252 0.748 33 H 0.022 0.978 34 H 0.025 0.975 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.186 0.814 44 H 0.125 0.875 45 H 0.020 0.980 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.019 -12.195 -5.284 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.130 4.130 12 H 0.105 0.895 13 C -0.160 4.160 14 C -0.022 4.022 15 N -0.346 5.346 16 C 0.313 3.687 17 O -0.390 6.390 18 C -0.141 4.141 19 C -0.017 4.017 20 C -0.149 4.149 21 C -0.068 4.068 22 C -0.213 4.213 23 C -0.080 4.080 24 N -0.131 5.131 25 H 0.285 0.715 26 N -0.141 5.141 27 C -0.042 4.042 28 C -0.118 4.118 29 C 0.012 3.988 30 H 0.098 0.902 31 C 0.041 3.959 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.203 0.797 44 H 0.143 0.857 45 H 0.038 0.962 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.791 -12.256 -3.913 20.369 hybrid contribution 0.317 1.465 -0.411 1.554 sum -15.474 -10.791 -4.324 19.354 Atomic orbital electron populations 1.69943 1.04700 1.24768 1.56522 1.24850 0.95695 0.97717 1.02161 0.86054 0.78615 0.83906 0.77228 1.20551 1.21800 1.21748 1.19060 0.90421 0.82299 1.44156 0.90381 1.44188 1.01686 0.99897 1.87134 1.20985 0.93399 0.85640 0.98125 1.22864 0.95936 0.97909 0.96261 0.89547 1.22821 0.93987 1.01608 0.97542 1.22341 0.95074 0.90635 0.94154 1.48558 1.08008 1.37921 1.40150 1.19963 0.81408 0.83106 0.84265 1.90790 1.79057 1.29619 1.39560 1.20748 0.91410 1.00852 1.01068 1.18807 0.93372 0.94639 0.94916 1.20429 0.96884 0.96218 1.01393 1.20152 0.92631 0.98385 0.95655 1.19661 0.96058 1.00795 1.04785 1.22649 0.96222 0.96312 0.92858 1.46267 1.16964 1.20965 1.28906 0.71516 1.77649 0.98738 1.12654 1.25016 1.20848 0.94348 0.95021 0.94020 1.19586 0.90839 1.01651 0.99682 1.22936 0.83914 0.97702 0.94288 0.90178 1.21640 0.84120 0.90123 0.99983 0.93723 0.95979 0.95758 0.89923 0.90489 0.91799 0.91070 0.88226 0.87926 0.85842 0.85786 0.79678 0.85693 0.96246 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 10.17 55.49 0.56 -27.45 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.23 -6.57 10.25 -15.06 -0.15 -6.73 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.72 3.37 -172.22 -0.58 -16.30 16 10 C 0.14 2.97 6.65 -3.86 -0.03 2.94 16 11 C -0.11 -1.83 3.90 -88.34 -0.34 -2.18 16 12 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.12 -1.65 6.25 -24.64 -0.15 -1.81 16 14 C 0.10 1.25 6.68 -2.43 -0.02 1.24 16 15 N -0.61 -10.42 2.85 -161.53 -0.46 -10.88 16 16 C 0.53 9.41 7.66 -10.98 -0.08 9.33 16 17 O -0.52 -11.88 16.15 5.56 0.09 -11.79 16 18 C -0.10 -1.29 4.77 -29.03 -0.14 -1.43 16 19 C -0.01 -0.18 4.33 -105.01 -0.45 -0.63 16 20 C -0.13 -1.80 9.51 -39.97 -0.38 -2.18 16 21 C -0.05 -0.60 10.09 -39.41 -0.40 -1.00 16 22 C -0.20 -2.64 6.33 -105.19 -0.67 -3.30 16 23 C 0.08 0.70 12.08 -16.61 -0.20 0.50 16 24 N -0.43 -4.11 7.18 30.84 0.22 -3.89 16 25 H 0.44 2.34 8.96 -182.71 -1.64 0.70 16 26 N -0.31 -4.41 12.70 33.26 0.42 -3.99 16 27 C 0.11 1.67 7.49 -83.05 -0.62 1.05 16 28 C -0.10 -1.42 9.66 -39.40 -0.38 -1.80 16 29 C 0.12 2.31 3.88 -65.74 -0.25 2.06 16 30 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 31 C 0.17 4.28 4.80 -3.39 -0.02 4.27 16 32 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.49 7.74 -51.92 -0.40 0.09 16 35 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 39 H 0.10 0.98 8.06 -51.93 -0.42 0.57 16 40 H 0.10 1.09 7.78 -51.93 -0.40 0.69 16 41 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.19 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 45 H 0.02 0.55 7.94 -51.93 -0.41 0.14 16 46 H 0.10 2.89 6.22 -51.93 -0.32 2.57 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -38.58 374.25 -11.26 -49.84 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.75 Total: 1.19 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -4.39 Total: 0.01 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: 0.17 Total: -62.51 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.58 -11.26 -49.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076514946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.604 kcal (2) G-P(sol) polarization free energy of solvation -38.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds