Wall clock time and date at job start Tue Mar 31 2020 23:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48500 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47240 * 299.99395 * 3 2 1 6 6 H 1.48493 * 109.47455 * 59.99923 * 3 2 1 7 7 C 1.38815 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99672 * 0.02562 * 7 2 1 10 10 C 1.46580 * 125.30332 * 180.02562 * 9 7 2 11 11 C 1.53264 * 108.15788 * 177.89063 * 10 9 7 12 12 H 1.09000 * 112.58102 * 222.76154 * 11 10 9 13 13 C 1.54794 * 109.75196 * 95.75892 * 11 10 9 14 14 C 1.55168 * 101.39796 * 212.11713 * 13 11 10 15 15 N 1.47349 * 104.77824 * 37.53689 * 14 13 11 16 16 C 1.34775 * 125.52792 * 156.46892 * 15 14 13 17 17 O 1.21277 * 119.99982 * 179.69175 * 16 15 14 18 18 C 1.50703 * 119.99676 * 359.69309 * 16 15 14 19 19 C 1.50709 * 109.46649 * 180.02562 * 18 16 15 20 20 C 1.39677 * 119.09429 * 90.00265 * 19 18 16 21 21 C 1.35649 * 121.72814 * 180.02562 * 20 19 18 22 22 C 1.41135 * 119.53982 * 0.02562 * 21 20 19 23 23 C 1.38241 * 134.82192 * 179.68380 * 22 21 20 24 24 N 1.33994 * 107.90407 * 179.97438 * 23 22 21 25 25 H 0.96996 * 125.01912 * 180.14521 * 24 23 22 26 26 N 1.39949 * 109.95708 * 0.36175 * 24 23 22 27 27 C 1.32064 * 108.95929 * 359.77257 * 26 24 23 28 28 C 1.35642 * 119.08710 * 270.01991 * 19 18 16 29 29 C 1.47212 * 108.93904 * 336.20561 * 15 14 13 30 30 H 1.09003 * 112.28739 * 236.48292 * 29 15 14 31 31 C 1.46603 * 125.30543 * 0.02562 * 9 7 2 32 32 H 0.96995 * 120.00380 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.73975 * 58.19518 * 10 9 7 34 34 H 1.09008 * 109.73511 * 297.57191 * 10 9 7 35 35 H 1.08997 * 111.02099 * 330.34677 * 13 11 10 36 36 H 1.09005 * 111.02330 * 94.19716 * 13 11 10 37 37 H 1.09004 * 110.49030 * 278.67671 * 14 13 11 38 38 H 1.09000 * 110.32679 * 156.31313 * 14 13 11 39 39 H 1.08996 * 109.47359 * 60.00246 * 18 16 15 40 40 H 1.08992 * 109.47491 * 299.99734 * 18 16 15 41 41 H 1.08004 * 119.13487 * 0.02562 * 20 19 18 42 42 H 1.07998 * 120.23175 * 180.02562 * 21 20 19 43 43 H 1.07993 * 126.04643 * 0.02620 * 23 22 21 44 44 H 1.07998 * 120.20735 * 0.02562 * 28 19 18 45 45 H 1.08995 * 109.91796 * 78.45310 * 31 9 7 46 46 H 1.09000 * 109.91314 * 317.16670 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9380 -3.7198 0.0016 11 6 0.8152 -4.7618 0.0548 12 1 1.0334 -5.5773 0.7444 13 6 0.4841 -5.2475 -1.3771 14 6 -1.0350 -5.5405 -1.2579 15 7 -1.5554 -4.4763 -0.3817 16 6 -2.8325 -4.0473 -0.3442 17 8 -3.1535 -3.1648 0.4232 18 6 -3.8617 -4.6643 -1.2560 19 6 -5.1990 -4.0114 -1.0184 20 6 -5.5460 -2.8829 -1.7647 21 6 -6.7352 -2.2529 -1.5944 22 6 -7.6520 -2.7433 -0.6399 23 6 -8.9098 -2.3622 -0.2113 24 7 -9.2995 -3.2229 0.7388 25 1 -10.1472 -3.1866 1.2090 26 7 -8.3008 -4.1789 0.9562 27 6 -7.2865 -3.9312 0.1475 28 6 -6.0324 -4.5358 -0.0855 29 6 -0.4554 -3.9622 0.4506 30 1 -0.6756 -4.0318 1.5159 31 6 -0.1342 -2.5236 -0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 2.5823 -3.8280 0.8740 34 1 2.5239 -3.8562 -0.9074 35 1 0.6785 -4.4648 -2.1103 36 1 1.0380 -6.1543 -1.6204 37 1 -1.2006 -6.5186 -0.8061 38 1 -1.5085 -5.4898 -2.2384 39 1 -3.9364 -5.7320 -1.0497 40 1 -3.5640 -4.5148 -2.2938 41 1 -4.8492 -2.5018 -2.4966 42 1 -6.9788 -1.3822 -2.1850 43 1 -9.4781 -1.5204 -0.5781 44 1 -5.7373 -5.4091 0.4773 45 1 -0.5221 -2.3541 -1.0049 46 1 -0.5739 -1.8093 0.6956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076514946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:04 Heat of formation + Delta-G solvation = 73.563618 kcal Electronic energy + Delta-G solvation = -29309.053175 eV Core-core repulsion = 25393.049451 eV Total energy + Delta-G solvation = -3916.003725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.18726 -41.44507 -39.62256 -38.07017 -36.58540 -34.14215 -33.37959 -32.91035 -32.15147 -30.55478 -29.75509 -29.09011 -27.96819 -26.42077 -24.66932 -23.71610 -22.58233 -22.11519 -21.63177 -20.92701 -19.95781 -18.96022 -18.90473 -18.05877 -17.70663 -17.16472 -16.65151 -16.46240 -16.10852 -15.93707 -15.75596 -15.34662 -15.04219 -14.92544 -14.84923 -14.34232 -14.06338 -13.79049 -13.69275 -13.40616 -13.19685 -13.00543 -12.93745 -12.81157 -12.70144 -12.67664 -12.47379 -12.43209 -12.09826 -11.85944 -11.66871 -11.43946 -11.36024 -11.28816 -11.25860 -10.81449 -10.73552 -9.58472 -9.52454 -8.89868 -8.57214 -7.77773 -5.23395 -0.30318 0.82117 1.42746 1.45310 1.49014 1.55777 1.78345 1.89067 2.11591 2.48736 2.89352 3.30356 3.32313 3.47319 3.68265 3.69238 3.81249 3.89342 4.04283 4.09269 4.17106 4.32859 4.38292 4.39565 4.45491 4.54263 4.56088 4.61324 4.62188 4.69055 4.76791 4.80368 4.91076 4.98285 5.15646 5.23061 5.23898 5.29454 5.45626 5.48719 5.53300 5.56502 5.64062 5.73200 5.84004 5.96021 6.26419 6.30954 6.61137 6.72436 7.08548 7.34544 7.79913 8.40383 9.24186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003037 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.353645 B = 9218.082561 C =10835.936200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.626 5.626 10 C 0.136 3.864 11 C -0.094 4.094 12 H 0.126 0.874 13 C -0.114 4.114 14 C 0.098 3.902 15 N -0.612 5.612 16 C 0.516 3.484 17 O -0.582 6.582 18 C -0.087 4.087 19 C -0.019 4.019 20 C -0.167 4.167 21 C -0.038 4.038 22 C -0.242 4.242 23 C 0.115 3.885 24 N -0.416 5.416 25 H 0.460 0.540 26 N -0.355 5.355 27 C 0.084 3.916 28 C -0.123 4.123 29 C 0.117 3.883 30 H 0.062 0.938 31 C 0.188 3.812 32 H 0.242 0.758 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.152 0.848 43 H 0.242 0.758 44 H 0.126 0.874 45 H -0.019 1.019 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 -14.061 -6.717 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.265 4.265 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.370 4.370 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.113 4.113 12 H 0.144 0.856 13 C -0.152 4.152 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.306 3.694 17 O -0.462 6.462 18 C -0.126 4.126 19 C -0.023 4.023 20 C -0.187 4.187 21 C -0.058 4.058 22 C -0.252 4.252 23 C -0.043 4.043 24 N -0.117 5.117 25 H 0.307 0.693 26 N -0.185 5.185 27 C -0.068 4.068 28 C -0.144 4.144 29 C 0.012 3.988 30 H 0.080 0.920 31 C 0.061 3.939 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.170 0.830 43 H 0.258 0.742 44 H 0.144 0.856 45 H -0.001 1.001 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.002 -14.214 -5.360 22.064 hybrid contribution 0.315 2.118 0.069 2.142 sum -15.686 -12.096 -5.291 20.503 Atomic orbital electron populations 1.70288 1.06514 1.24708 1.58248 1.25789 0.96514 1.01502 1.02685 0.84965 0.78342 0.79187 0.76579 1.18312 1.21878 1.22255 1.19529 0.91134 0.83581 1.42755 0.89398 1.44514 1.02165 1.01611 1.86921 1.21277 0.94908 0.84040 0.98667 1.22911 0.91777 0.97233 0.99381 0.85565 1.22839 0.95458 1.02563 0.94307 1.22748 0.94042 0.90534 0.95016 1.48684 1.07144 1.38612 1.40173 1.20953 0.82293 0.82201 0.83938 1.90757 1.80306 1.32647 1.42447 1.20773 0.88882 1.02161 1.00804 1.18998 0.93754 0.94824 0.94770 1.20624 0.98032 0.97262 1.02738 1.20512 0.91921 0.98381 0.94977 1.20082 0.98043 1.01231 1.05855 1.23479 0.94670 0.95904 0.90292 1.46337 1.16935 1.19883 1.28569 0.69257 1.77560 0.99776 1.14912 1.26253 1.21124 0.94718 0.96157 0.94826 1.19731 0.91653 1.02489 1.00503 1.22572 0.87125 0.95138 0.93940 0.92020 1.21125 0.83866 0.92697 0.96183 0.94867 0.95442 0.94467 0.92852 0.85738 0.87733 0.88304 0.84639 0.85436 0.85738 0.83022 0.74195 0.85648 1.00087 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.15 10.17 21.65 0.22 -61.93 16 2 C -0.07 -4.37 5.48 84.86 0.47 -3.91 16 3 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 7 C -0.24 -14.10 10.25 84.03 0.86 -13.24 16 8 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 9 N -0.63 -33.74 3.37 -698.77 -2.36 -36.10 16 10 C 0.14 5.45 6.65 86.45 0.58 6.03 16 11 C -0.09 -2.91 3.90 -9.32 -0.04 -2.94 16 12 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 13 C -0.11 -2.68 6.25 31.95 0.20 -2.48 16 14 C 0.10 2.04 6.68 86.96 0.58 2.62 16 15 N -0.61 -20.68 2.85 -783.35 -2.23 -22.91 16 16 C 0.52 19.05 7.66 87.66 0.67 19.72 16 17 O -0.58 -28.91 16.15 -3.02 -0.05 -28.96 16 18 C -0.09 -2.16 4.77 29.11 0.14 -2.02 16 19 C -0.02 -0.55 4.33 -20.12 -0.09 -0.63 16 20 C -0.17 -4.78 9.51 22.02 0.21 -4.57 16 21 C -0.04 -0.95 10.09 22.38 0.23 -0.72 16 22 C -0.24 -6.12 6.33 -20.23 -0.13 -6.25 16 23 C 0.12 1.79 12.08 84.36 1.02 2.81 16 24 N -0.42 -7.20 7.18 -56.35 -0.40 -7.61 16 25 H 0.46 3.82 8.96 -213.42 -1.91 1.91 16 26 N -0.36 -10.13 12.70 -48.70 -0.62 -10.75 16 27 C 0.08 2.59 7.49 42.16 0.32 2.91 16 28 C -0.12 -3.78 9.66 22.39 0.22 -3.56 16 29 C 0.12 4.82 3.88 46.02 0.18 5.00 16 30 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 31 C 0.19 10.27 4.80 86.75 0.42 10.68 16 32 H 0.24 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.04 1.42 7.74 -2.38 -0.02 1.40 16 35 H 0.05 1.60 7.88 -2.39 -0.02 1.58 16 36 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.59 7.48 -2.39 -0.02 1.57 16 39 H 0.14 2.35 8.06 -2.39 -0.02 2.33 16 40 H 0.13 2.50 7.78 -2.39 -0.02 2.48 16 41 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 42 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.24 0.86 8.06 -2.91 -0.02 0.84 16 44 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 45 H -0.02 -1.14 7.94 -2.39 -0.02 -1.16 16 46 H 0.03 2.30 6.22 -2.39 -0.01 2.29 16 Total: -1.00 -96.12 374.25 1.50 -94.62 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.90 Total: 14.09 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.82 Total: 9.43 kcal Atomic # 7 Polarization: -133.91 SS G_CDS: -5.39 Total: -139.30 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -96.12 1.50 -94.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076514946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.183 kcal (2) G-P(sol) polarization free energy of solvation -96.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds