Wall clock time and date at job start Tue Mar 31 2020 23:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48504 * 109.47025 * 240.00125 * 3 2 1 5 5 H 1.48496 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47153 * 120.00299 * 3 2 1 7 7 C 1.38810 * 119.99388 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00733 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00505 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.88129 * 336.34317 * 10 9 7 12 12 C 1.53945 * 113.74704 * 107.76723 * 10 9 7 13 13 C 1.53950 * 87.29605 * 139.21641 * 12 10 9 14 14 H 1.08994 * 113.75323 * 220.78390 * 13 12 10 15 15 N 1.46505 * 113.66061 * 89.73830 * 13 12 10 16 16 C 1.34773 * 120.00095 * 107.81779 * 15 13 12 17 17 O 1.21653 * 119.99855 * 359.97438 * 16 15 13 18 18 C 1.47274 * 120.00340 * 179.72642 * 16 15 13 19 19 C 1.38436 * 120.03109 * 179.97438 * 18 16 15 20 20 C 1.40658 * 118.26728 * 179.80729 * 19 18 16 21 21 C 1.38259 * 133.39845 * 180.14121 * 20 19 18 22 22 C 1.39674 * 106.99647 * 180.29395 * 21 20 19 23 23 C 1.35645 * 108.08391 * 359.97438 * 22 21 20 24 24 N 1.35911 * 109.05978 * 0.02562 * 23 22 21 25 25 C 1.36903 * 132.43070 * 180.02562 * 24 23 22 26 26 N 1.29786 * 121.48486 * 180.02562 * 25 24 23 27 27 C 1.52908 * 113.66063 * 204.99860 * 10 9 7 28 28 C 1.52907 * 121.13829 * 346.25262 * 27 10 9 29 29 C 1.53959 * 86.78100 * 100.82284 * 28 27 10 30 30 C 1.52909 * 121.13509 * 94.81759 * 27 10 9 31 31 H 0.97003 * 119.99821 * 359.97438 * 1 2 3 32 32 H 0.97000 * 119.99562 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.57792 * 24.62114 * 12 10 9 34 34 H 1.08997 * 113.58134 * 253.82273 * 12 10 9 35 35 H 0.97000 * 119.99792 * 287.81344 * 15 13 12 36 36 H 1.07996 * 120.86372 * 359.97438 * 19 18 16 37 37 H 1.08000 * 126.50164 * 0.31411 * 21 20 19 38 38 H 1.07998 * 125.96036 * 179.97438 * 22 21 20 39 39 H 1.07999 * 125.47532 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.25550 * 359.97438 * 25 24 23 41 41 H 1.08997 * 113.66259 * 215.28944 * 28 27 10 42 42 H 1.08999 * 113.66319 * 346.35181 * 28 27 10 43 43 H 1.09006 * 113.57586 * 270.12900 * 29 28 27 44 44 H 1.08998 * 113.65087 * 139.34723 * 29 28 27 45 45 H 1.08998 * 113.66482 * 13.65135 * 30 27 10 46 46 H 1.09006 * 113.66457 * 144.70885 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 3.0664 -3.5641 -0.4024 12 6 1.9954 -4.4088 1.3424 13 6 1.8267 -5.7030 0.5261 14 1 1.0969 -6.3951 0.9462 15 7 3.0949 -6.3514 0.1830 16 6 3.4542 -7.4961 0.7968 17 8 2.7256 -7.9909 1.6361 18 6 4.7262 -8.1511 0.4477 19 6 5.0961 -9.3267 1.0782 20 6 6.3167 -9.9229 0.7132 21 6 6.9759 -11.0664 1.1246 22 6 8.1669 -11.1349 0.3981 23 6 8.2188 -10.0600 -0.4275 24 7 7.0999 -9.3092 -0.2497 25 6 6.6677 -8.1449 -0.8256 26 7 5.5388 -7.6003 -0.4886 27 6 1.2654 -4.8230 -0.5913 28 6 -0.2409 -4.7144 -0.8311 29 6 0.1007 -4.4608 -2.3108 30 6 1.4179 -5.2175 -2.0607 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 0.0005 33 1 1.1222 -4.1557 1.9438 34 1 2.9260 -4.3685 1.9086 35 1 3.6759 -5.9567 -0.4860 36 1 4.4627 -9.7759 1.8287 37 1 6.6345 -11.7730 1.8667 38 1 8.9158 -11.9088 0.4795 39 1 9.0210 -9.8360 -1.1152 40 1 7.2802 -7.6683 -1.5766 41 1 -0.7794 -5.6464 -0.6600 42 1 -0.7022 -3.8599 -0.3360 43 1 0.2421 -3.4071 -2.5512 44 1 -0.5678 -4.9673 -3.0069 45 1 2.2816 -4.7651 -2.5479 46 1 1.3455 -6.2911 -2.2353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078659270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:14 Heat of formation + Delta-G solvation = 113.105974 kcal Electronic energy + Delta-G solvation = -28826.154275 eV Core-core repulsion = 24911.865236 eV Total energy + Delta-G solvation = -3914.289039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.74161 -40.60447 -39.18960 -37.56817 -35.01734 -34.03654 -33.47943 -32.27833 -31.27621 -29.90714 -28.68580 -25.45652 -25.17828 -24.49186 -24.09164 -23.68506 -22.08949 -21.55330 -20.85829 -20.04082 -18.92740 -18.12982 -17.61609 -16.86551 -16.27042 -16.16961 -16.15929 -15.59353 -15.11207 -14.88325 -14.69824 -14.69023 -14.45929 -13.80526 -13.50265 -13.05756 -12.97179 -12.82863 -12.75740 -12.50312 -12.40160 -11.97020 -11.76008 -11.67447 -11.32217 -10.96701 -10.86860 -10.81547 -10.77169 -10.56037 -10.19198 -10.16086 -9.97522 -9.81463 -9.60322 -9.36819 -9.36154 -8.83450 -8.67400 -7.89189 -6.96152 -5.78936 -3.07236 0.08657 0.80149 2.15028 2.44930 2.54843 3.08458 3.42612 3.47495 3.48162 3.48573 3.62659 4.18645 4.31394 4.42874 4.57662 4.77755 4.82957 4.88962 5.05764 5.06530 5.12233 5.23330 5.28148 5.31643 5.35542 5.46452 5.66613 5.72299 5.79440 5.87652 5.98852 6.05497 6.09581 6.14595 6.15496 6.20402 6.29830 6.35019 6.45495 6.53359 6.60221 6.67417 6.68097 6.91975 6.96538 7.06962 7.24167 7.67935 7.69013 8.24866 8.39946 9.51370 10.08846 10.43975 11.43242 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.002467 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.630306 B =11349.191243 C =12122.140714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.707 5.707 10 C 0.192 3.808 11 H 0.076 0.924 12 C -0.174 4.174 13 C 0.127 3.873 14 H 0.097 0.903 15 N -0.682 5.682 16 C 0.578 3.422 17 O -0.541 6.541 18 C 0.012 3.988 19 C -0.040 4.040 20 C 0.025 3.975 21 C -0.171 4.171 22 C -0.147 4.147 23 C -0.027 4.027 24 N -0.388 5.388 25 C 0.308 3.692 26 N -0.465 5.465 27 C -0.120 4.120 28 C -0.109 4.109 29 C -0.131 4.131 30 C -0.125 4.125 31 H 0.256 0.744 32 H 0.387 0.613 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.410 0.590 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.177 0.823 40 H 0.209 0.791 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.308 -22.440 -3.325 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.346 5.346 10 C 0.080 3.920 11 H 0.094 0.906 12 C -0.216 4.216 13 C 0.021 3.979 14 H 0.115 0.885 15 N -0.330 5.330 16 C 0.363 3.637 17 O -0.418 6.418 18 C -0.105 4.105 19 C -0.062 4.062 20 C -0.080 4.080 21 C -0.197 4.197 22 C -0.170 4.170 23 C -0.158 4.158 24 N -0.061 5.061 25 C 0.026 3.974 26 N -0.177 5.177 27 C -0.123 4.123 28 C -0.147 4.147 29 C -0.168 4.168 30 C -0.162 4.162 31 H 0.066 0.934 32 H 0.223 0.777 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.181 0.819 37 H 0.170 0.830 38 H 0.170 0.830 39 H 0.194 0.806 40 H 0.225 0.775 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.357 -21.546 -3.161 25.547 hybrid contribution 0.841 0.416 0.077 0.942 sum 14.199 -21.131 -3.084 25.644 Atomic orbital electron populations 1.69645 1.05070 1.25834 1.57378 1.24738 0.95505 0.97677 1.02832 0.86281 0.78545 0.83607 0.77818 1.21301 1.21718 1.21296 1.19236 0.90997 0.84204 1.43005 0.91259 1.42387 1.05897 0.99543 1.86748 1.21278 0.94354 0.84538 0.91879 0.90598 1.24276 1.01966 0.95309 1.00065 1.21795 0.84925 0.93611 0.97550 0.88527 1.45418 1.22049 1.23767 1.41734 1.17359 0.84020 0.80880 0.81414 1.90818 1.52674 1.65055 1.33300 1.20876 0.96375 0.95711 0.97582 1.21693 0.93100 0.93427 0.97970 1.18910 0.94376 0.97556 0.97122 1.21180 0.96175 0.97667 1.04674 1.21070 0.98821 0.98944 0.98144 1.22007 0.91695 0.94976 1.07155 1.43188 1.16735 1.18061 1.28105 1.24810 0.92928 0.83254 0.96443 1.68182 1.03341 1.31039 1.15148 1.23581 0.97672 0.97964 0.93090 1.22451 0.93785 1.01619 0.96865 1.22744 0.96594 1.01448 0.96048 1.22630 0.98543 0.99193 0.95883 0.93417 0.77692 0.89476 0.92284 0.75425 0.81880 0.83047 0.83015 0.80592 0.77468 0.90780 0.90249 0.89172 0.92525 0.91692 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.71 -17.13 5.33 -52.99 -0.28 -17.41 16 10 C 0.19 3.74 4.27 -67.48 -0.29 3.46 16 11 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 12 C -0.17 -3.18 7.68 -25.75 -0.20 -3.38 16 13 C 0.13 2.04 4.12 -67.48 -0.28 1.76 16 14 H 0.10 1.64 7.46 -51.93 -0.39 1.25 16 15 N -0.68 -10.00 5.04 -54.48 -0.27 -10.28 16 16 C 0.58 8.81 7.78 -12.59 -0.10 8.72 16 17 O -0.54 -9.65 15.94 5.23 0.08 -9.56 16 18 C 0.01 0.16 6.78 -82.43 -0.56 -0.40 16 19 C -0.04 -0.45 9.72 -38.60 -0.38 -0.83 16 20 C 0.03 0.25 6.78 -83.95 -0.57 -0.32 16 21 C -0.17 -1.40 10.98 -39.04 -0.43 -1.83 16 22 C -0.15 -0.95 10.80 -39.97 -0.43 -1.38 16 23 C -0.03 -0.17 11.61 -16.67 -0.19 -0.36 16 24 N -0.39 -3.29 2.95 -62.17 -0.18 -3.48 16 25 C 0.31 2.49 12.16 -89.24 -1.09 1.41 16 26 N -0.46 -5.15 9.59 -10.43 -0.10 -5.25 16 27 C -0.12 -1.97 0.92 -154.71 -0.14 -2.12 16 28 C -0.11 -1.78 7.47 -26.28 -0.20 -1.98 16 29 C -0.13 -2.06 8.08 -25.74 -0.21 -2.27 16 30 C -0.12 -1.85 7.49 -26.28 -0.20 -2.04 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.39 9.91 5.92 -40.82 -0.24 9.67 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.41 5.61 7.94 -40.82 -0.32 5.28 16 36 H 0.16 1.75 7.66 -52.49 -0.40 1.35 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.18 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.21 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.47 6.42 -51.93 -0.33 1.14 16 43 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -32.85 383.75 -11.07 -43.92 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.31 Total: 14.73 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -5.49 Total: -8.73 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -0.12 Total: -63.30 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.85 -11.07 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.024 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds