Wall clock time and date at job start Tue Mar 31 2020 23:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48504 * 109.47025 * 240.00125 * 3 2 1 5 5 H 1.48496 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47153 * 120.00299 * 3 2 1 7 7 C 1.38810 * 119.99388 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00733 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00505 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.88129 * 336.34317 * 10 9 7 12 12 C 1.53945 * 113.74704 * 107.76723 * 10 9 7 13 13 C 1.53950 * 87.29605 * 139.21641 * 12 10 9 14 14 H 1.08994 * 113.75323 * 220.78390 * 13 12 10 15 15 N 1.46505 * 113.66061 * 89.73830 * 13 12 10 16 16 C 1.34773 * 120.00095 * 107.81779 * 15 13 12 17 17 O 1.21653 * 119.99855 * 359.97438 * 16 15 13 18 18 C 1.47274 * 120.00340 * 179.72642 * 16 15 13 19 19 C 1.38436 * 120.03109 * 179.97438 * 18 16 15 20 20 C 1.40658 * 118.26728 * 179.80729 * 19 18 16 21 21 C 1.38259 * 133.39845 * 180.14121 * 20 19 18 22 22 C 1.39674 * 106.99647 * 180.29395 * 21 20 19 23 23 C 1.35645 * 108.08391 * 359.97438 * 22 21 20 24 24 N 1.35911 * 109.05978 * 0.02562 * 23 22 21 25 25 C 1.36903 * 132.43070 * 180.02562 * 24 23 22 26 26 N 1.29786 * 121.48486 * 180.02562 * 25 24 23 27 27 C 1.52908 * 113.66063 * 204.99860 * 10 9 7 28 28 C 1.52907 * 121.13829 * 346.25262 * 27 10 9 29 29 C 1.53959 * 86.78100 * 100.82284 * 28 27 10 30 30 C 1.52909 * 121.13509 * 94.81759 * 27 10 9 31 31 H 0.97003 * 119.99821 * 359.97438 * 1 2 3 32 32 H 0.97000 * 119.99562 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.57792 * 24.62114 * 12 10 9 34 34 H 1.08997 * 113.58134 * 253.82273 * 12 10 9 35 35 H 0.97000 * 119.99792 * 287.81344 * 15 13 12 36 36 H 1.07996 * 120.86372 * 359.97438 * 19 18 16 37 37 H 1.08000 * 126.50164 * 0.31411 * 21 20 19 38 38 H 1.07998 * 125.96036 * 179.97438 * 22 21 20 39 39 H 1.07999 * 125.47532 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.25550 * 359.97438 * 25 24 23 41 41 H 1.08997 * 113.66259 * 215.28944 * 28 27 10 42 42 H 1.08999 * 113.66319 * 346.35181 * 28 27 10 43 43 H 1.09006 * 113.57586 * 270.12900 * 29 28 27 44 44 H 1.08998 * 113.65087 * 139.34723 * 29 28 27 45 45 H 1.08998 * 113.66482 * 13.65135 * 30 27 10 46 46 H 1.09006 * 113.66457 * 144.70885 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 3.0664 -3.5641 -0.4024 12 6 1.9954 -4.4088 1.3424 13 6 1.8267 -5.7030 0.5261 14 1 1.0969 -6.3951 0.9462 15 7 3.0949 -6.3514 0.1830 16 6 3.4542 -7.4961 0.7968 17 8 2.7256 -7.9909 1.6361 18 6 4.7262 -8.1511 0.4477 19 6 5.0961 -9.3267 1.0782 20 6 6.3167 -9.9229 0.7132 21 6 6.9759 -11.0664 1.1246 22 6 8.1669 -11.1349 0.3981 23 6 8.2188 -10.0600 -0.4275 24 7 7.0999 -9.3092 -0.2497 25 6 6.6677 -8.1449 -0.8256 26 7 5.5388 -7.6003 -0.4886 27 6 1.2654 -4.8230 -0.5913 28 6 -0.2409 -4.7144 -0.8311 29 6 0.1007 -4.4608 -2.3108 30 6 1.4179 -5.2175 -2.0607 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 0.0005 33 1 1.1222 -4.1557 1.9438 34 1 2.9260 -4.3685 1.9086 35 1 3.6759 -5.9567 -0.4860 36 1 4.4627 -9.7759 1.8287 37 1 6.6345 -11.7730 1.8667 38 1 8.9158 -11.9088 0.4795 39 1 9.0210 -9.8360 -1.1152 40 1 7.2802 -7.6683 -1.5766 41 1 -0.7794 -5.6464 -0.6600 42 1 -0.7022 -3.8599 -0.3360 43 1 0.2421 -3.4071 -2.5512 44 1 -0.5678 -4.9673 -3.0069 45 1 2.2816 -4.7651 -2.5479 46 1 1.3455 -6.2911 -2.2353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078659270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:13 Heat of formation + Delta-G solvation = 94.492762 kcal Electronic energy + Delta-G solvation = -28826.961405 eV Core-core repulsion = 24911.865236 eV Total energy + Delta-G solvation = -3915.096169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.34493 -41.95972 -40.33399 -38.34558 -36.40224 -35.80709 -34.19925 -33.80742 -32.02967 -31.64513 -29.46747 -26.77642 -26.62631 -25.62819 -25.40211 -24.67619 -23.54817 -22.28515 -21.83232 -21.30230 -19.76359 -19.63210 -18.97546 -18.19549 -17.36496 -17.05322 -16.85383 -16.69782 -16.46225 -16.36675 -15.86085 -15.85333 -15.44213 -15.28165 -15.03943 -14.21864 -13.97226 -13.77626 -13.54608 -13.49838 -13.33738 -13.31028 -13.28046 -13.18749 -12.87580 -12.75215 -12.51588 -12.20497 -11.94463 -11.87465 -11.70136 -11.61909 -11.34201 -11.23657 -10.99584 -10.91083 -10.69888 -9.98798 -9.91542 -8.96266 -8.55940 -7.93069 -5.20734 -0.67511 0.17721 1.47090 1.49505 1.55522 1.57138 1.60585 1.96453 1.97662 2.56686 2.61351 2.91684 3.37089 3.45957 3.49662 3.62058 3.69716 3.76198 3.89798 3.91560 4.00221 4.09343 4.11036 4.24410 4.28547 4.45024 4.55106 4.61079 4.62896 4.69989 4.73732 4.84176 4.87155 4.99205 5.06095 5.11685 5.15898 5.16487 5.22145 5.23447 5.48298 5.51424 5.56908 5.60988 5.64716 5.74299 6.17693 6.28535 6.38416 6.69456 7.09790 7.35738 8.11881 8.36513 9.29718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.002467 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.630306 B =11349.191243 C =12122.140714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.718 5.718 10 C 0.182 3.818 11 H 0.077 0.923 12 C -0.172 4.172 13 C 0.144 3.856 14 H 0.092 0.908 15 N -0.676 5.676 16 C 0.577 3.423 17 O -0.577 6.577 18 C -0.018 4.018 19 C -0.037 4.037 20 C -0.018 4.018 21 C -0.164 4.164 22 C -0.157 4.157 23 C -0.002 4.002 24 N -0.399 5.399 25 C 0.321 3.679 26 N -0.491 5.491 27 C -0.112 4.112 28 C -0.110 4.110 29 C -0.128 4.128 30 C -0.109 4.109 31 H 0.250 0.750 32 H 0.378 0.622 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.416 0.584 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.181 0.819 39 H 0.219 0.781 40 H 0.254 0.746 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.648 -24.516 -4.949 30.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.356 5.356 10 C 0.071 3.929 11 H 0.095 0.905 12 C -0.214 4.214 13 C 0.038 3.962 14 H 0.110 0.890 15 N -0.324 5.324 16 C 0.365 3.635 17 O -0.457 6.457 18 C -0.134 4.134 19 C -0.060 4.060 20 C -0.122 4.122 21 C -0.191 4.191 22 C -0.179 4.179 23 C -0.133 4.133 24 N -0.072 5.072 25 C 0.038 3.962 26 N -0.204 5.204 27 C -0.114 4.114 28 C -0.148 4.148 29 C -0.165 4.165 30 C -0.147 4.147 31 H 0.059 0.941 32 H 0.212 0.788 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.253 0.747 36 H 0.174 0.826 37 H 0.180 0.820 38 H 0.198 0.802 39 H 0.235 0.765 40 H 0.269 0.731 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.735 -23.657 -4.790 29.372 hybrid contribution 0.027 0.833 0.606 1.030 sum 16.762 -22.824 -4.184 28.626 Atomic orbital electron populations 1.69806 1.06487 1.26006 1.59447 1.25507 0.96326 1.00886 1.03847 0.85265 0.77216 0.79515 0.78077 1.20278 1.22356 1.20790 1.19621 0.91417 0.85352 1.41032 0.90770 1.42514 1.05603 1.00453 1.87061 1.21499 0.94581 0.83701 0.93105 0.90468 1.24140 1.01116 0.96743 0.99380 1.21488 0.85626 0.92531 0.96529 0.88985 1.45303 1.21485 1.23726 1.41883 1.17771 0.84684 0.80525 0.80553 1.90782 1.54127 1.65973 1.34852 1.20446 0.96260 0.96711 1.00020 1.21702 0.93795 0.93055 0.97399 1.18995 0.94833 0.99046 0.99289 1.21604 0.96485 0.96815 1.04183 1.21530 0.98702 0.99951 0.97753 1.22854 0.91016 0.93480 1.06001 1.43400 1.17259 1.18457 1.28081 1.25667 0.92089 0.82618 0.95796 1.68107 1.04652 1.31995 1.15650 1.23356 0.97587 0.95961 0.94539 1.22505 0.93581 1.01595 0.97144 1.22645 0.97836 1.00008 0.96048 1.22587 0.98029 1.00279 0.93789 0.94100 0.78805 0.90925 0.92706 0.74687 0.82612 0.81990 0.80180 0.76472 0.73060 0.88426 0.93073 0.92289 0.90036 0.91375 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.24 -13.39 9.97 84.03 0.84 -12.55 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -35.89 5.33 -321.57 -1.71 -37.60 16 10 C 0.18 7.22 4.27 45.28 0.19 7.41 16 11 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 12 C -0.17 -6.49 7.68 31.23 0.24 -6.25 16 13 C 0.14 4.70 4.12 45.28 0.19 4.89 16 14 H 0.09 3.15 7.46 -2.39 -0.02 3.14 16 15 N -0.68 -19.88 5.04 -444.53 -2.24 -22.12 16 16 C 0.58 18.02 7.78 86.62 0.67 18.70 16 17 O -0.58 -21.38 15.94 -4.20 -0.07 -21.45 16 18 C -0.02 -0.48 6.78 40.98 0.28 -0.20 16 19 C -0.04 -0.86 9.72 22.91 0.22 -0.64 16 20 C -0.02 -0.34 6.78 38.69 0.26 -0.08 16 21 C -0.16 -2.33 10.98 22.62 0.25 -2.08 16 22 C -0.16 -1.41 10.80 22.02 0.24 -1.17 16 23 C 0.00 -0.02 11.61 83.46 0.97 0.95 16 24 N -0.40 -5.58 2.95 -350.62 -1.04 -6.62 16 25 C 0.32 4.30 12.16 179.87 2.19 6.48 16 26 N -0.49 -10.34 9.59 -186.90 -1.79 -12.13 16 27 C -0.11 -3.67 0.92 -52.31 -0.05 -3.72 16 28 C -0.11 -3.61 7.47 30.89 0.23 -3.37 16 29 C -0.13 -3.95 8.08 31.23 0.25 -3.70 16 30 C -0.11 -3.07 7.49 30.88 0.23 -2.84 16 31 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.38 20.22 5.92 -92.71 -0.55 19.67 16 33 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.42 11.20 7.94 -92.71 -0.74 10.47 16 36 H 0.16 3.60 7.66 -2.91 -0.02 3.58 16 37 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.22 -0.24 8.06 -2.91 -0.02 -0.26 16 40 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.05 1.98 6.42 -2.39 -0.02 1.96 16 43 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -74.43 383.75 2.87 -71.56 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.26 Total: 40.74 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 7.67 Total: -1.89 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -6.50 Total: -137.25 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.07 Total: -21.45 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.43 2.87 -71.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.049 kcal (2) G-P(sol) polarization free energy of solvation -74.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds