Wall clock time and date at job start Tue Mar 31 2020 23:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.89013 * 27.11279 * 10 9 7 12 12 C 1.53957 * 113.66469 * 255.76878 * 10 9 7 13 13 C 1.53943 * 87.29592 * 270.26501 * 12 10 9 14 14 H 1.09003 * 113.66370 * 220.79284 * 13 12 10 15 15 N 1.46497 * 113.66437 * 89.82805 * 13 12 10 16 16 C 1.34777 * 120.00287 * 104.50651 * 15 13 12 17 17 O 1.21606 * 119.99752 * 359.97438 * 16 15 13 18 18 C 1.47515 * 120.00485 * 180.02562 * 16 15 13 19 19 C 1.41042 * 119.38984 * 359.72603 * 18 16 15 20 20 C 1.35191 * 121.65284 * 179.68329 * 19 18 16 21 21 C 1.41381 * 119.92861 * 0.60392 * 20 19 18 22 22 N 1.31926 * 134.39127 * 179.70329 * 21 20 19 23 23 N 1.39919 * 109.06016 * 179.97438 * 22 21 20 24 24 H 0.96996 * 124.98428 * 180.02562 * 23 22 21 25 25 C 1.33815 * 110.02756 * 359.97438 * 23 22 21 26 26 C 1.38538 * 107.83679 * 0.02562 * 25 23 22 27 27 C 1.38210 * 119.39457 * 179.97438 * 18 16 15 28 28 C 1.52909 * 113.66450 * 158.58396 * 10 9 7 29 29 C 1.52905 * 121.13976 * 323.85453 * 28 10 9 30 30 C 1.53951 * 86.78325 * 209.37453 * 29 28 10 31 31 C 1.52905 * 121.13949 * 215.28709 * 28 10 9 32 32 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.09007 * 113.57592 * 24.87199 * 12 10 9 35 35 H 1.09001 * 113.57931 * 155.57895 * 12 10 9 36 36 H 0.97003 * 119.99817 * 284.50485 * 15 13 12 37 37 H 1.08004 * 119.17390 * 0.02562 * 19 18 16 38 38 H 1.08000 * 120.03335 * 180.27184 * 20 19 18 39 39 H 1.08006 * 126.08362 * 179.97438 * 25 23 22 40 40 H 1.08004 * 120.33010 * 0.02562 * 27 18 16 41 41 H 1.09005 * 113.66191 * 323.84405 * 29 28 10 42 42 H 1.08999 * 113.66553 * 94.89899 * 29 28 10 43 43 H 1.09001 * 113.58062 * 270.12702 * 30 29 28 44 44 H 1.09006 * 113.65276 * 139.34895 * 30 29 28 45 45 H 1.09000 * 113.66438 * 265.09198 * 31 28 10 46 46 H 1.08995 * 113.66448 * 36.15502 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0458 -3.5781 0.4489 12 6 2.0615 -4.3623 -1.3735 13 6 0.7680 -5.0698 -0.9304 14 1 0.7251 -6.1212 -1.2147 15 7 -0.4517 -4.3358 -1.2761 16 6 -1.2185 -4.7494 -2.3045 17 8 -0.8975 -5.7316 -2.9456 18 6 -2.4465 -4.0100 -2.6530 19 6 -2.8092 -2.8754 -1.8978 20 6 -3.9210 -2.1604 -2.1810 21 6 -4.7591 -2.5533 -3.2497 22 7 -5.8817 -2.0864 -3.7619 23 7 -6.2656 -2.8968 -4.8360 24 1 -7.0582 -2.7622 -5.3788 25 6 -5.3784 -3.8842 -5.0051 26 6 -4.3935 -3.7394 -4.0417 27 6 -3.2232 -4.4449 -3.7103 28 6 1.2377 -4.8413 0.5068 29 6 0.2350 -4.6741 1.6490 30 6 0.5248 -6.1440 2.0031 31 6 1.8895 -5.9649 1.3135 32 1 -0.4849 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 1.9209 -3.6831 -2.2145 35 1 2.9044 -5.0391 -1.5130 36 1 -0.7076 -3.5521 -0.7649 37 1 -2.1799 -2.5667 -1.0761 38 1 -4.1716 -1.2931 -1.5882 39 1 -5.4227 -4.6571 -5.7582 40 1 -2.9343 -5.3183 -4.2762 41 1 0.5574 -3.9680 2.4143 42 1 -0.7867 -4.4984 1.3121 43 1 -0.1305 -6.8521 1.4958 44 1 0.5986 -6.3294 3.0747 45 1 2.1896 -6.8205 0.7086 46 1 2.6769 -5.6216 1.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078711325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:45 Heat of formation + Delta-G solvation = 122.520228 kcal Electronic energy + Delta-G solvation = -29635.394140 eV Core-core repulsion = 25721.513333 eV Total energy + Delta-G solvation = -3913.880807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.36630 -40.59538 -38.86758 -36.54631 -35.23661 -33.61344 -32.35389 -32.15592 -30.67976 -29.76596 -28.92472 -25.49861 -25.18913 -24.23231 -23.88682 -23.02474 -22.16801 -20.70258 -20.23168 -19.94463 -18.46257 -18.28978 -17.12781 -17.00155 -16.48716 -15.65044 -15.23157 -15.05595 -15.00178 -14.63040 -14.26666 -14.09920 -14.02446 -13.78037 -13.47340 -13.01331 -12.95117 -12.67861 -12.43450 -12.09556 -11.94512 -11.62273 -11.51618 -11.44929 -11.32147 -10.91849 -10.84267 -10.63926 -10.39127 -10.37173 -10.23230 -10.05879 -9.81238 -9.71149 -9.49307 -9.30700 -8.85291 -8.83630 -8.45173 -7.64525 -7.01126 -5.83762 -3.11264 0.47641 1.54608 2.30401 2.52318 3.21812 3.42524 3.46465 3.47953 3.50312 4.08972 4.19570 4.46694 4.53382 4.79144 4.95185 4.99661 5.02245 5.09601 5.16456 5.20322 5.35735 5.38511 5.46417 5.57760 5.58740 5.69376 5.89847 5.93378 6.00196 6.05535 6.12887 6.15077 6.16397 6.30755 6.35535 6.39858 6.44887 6.50190 6.59815 6.66307 6.75333 6.78043 6.82818 6.88446 7.00510 7.17175 7.47086 7.68563 7.99037 8.36225 8.63163 9.46967 10.01625 10.35768 11.39130 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.004093 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.233674 B = 6840.101367 C = 9105.023052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.700 5.700 10 C 0.179 3.821 11 H 0.064 0.936 12 C -0.187 4.187 13 C 0.153 3.847 14 H 0.090 0.910 15 N -0.693 5.693 16 C 0.565 3.435 17 O -0.557 6.557 18 C -0.166 4.166 19 C -0.043 4.043 20 C -0.107 4.107 21 C 0.123 3.877 22 N -0.311 5.311 23 N -0.427 5.427 24 H 0.443 0.557 25 C 0.096 3.904 26 C -0.219 4.219 27 C 0.026 3.974 28 C -0.131 4.131 29 C -0.117 4.117 30 C -0.141 4.141 31 C -0.104 4.104 32 H 0.257 0.743 33 H 0.379 0.621 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.407 0.593 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.191 0.809 40 H 0.138 0.862 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 -11.619 -5.260 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.067 3.933 11 H 0.082 0.918 12 C -0.229 4.229 13 C 0.047 3.953 14 H 0.108 0.892 15 N -0.345 5.345 16 C 0.354 3.646 17 O -0.437 6.437 18 C -0.170 4.170 19 C -0.066 4.066 20 C -0.128 4.128 21 C -0.032 4.032 22 N -0.139 5.139 23 N -0.126 5.126 24 H 0.287 0.713 25 C -0.063 4.063 26 C -0.229 4.229 27 C 0.005 3.995 28 C -0.133 4.133 29 C -0.154 4.154 30 C -0.179 4.179 31 C -0.142 4.142 32 H 0.067 0.933 33 H 0.214 0.786 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.246 0.754 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.208 0.792 40 H 0.156 0.844 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.721 -11.144 -5.572 15.802 hybrid contribution 0.206 0.886 -0.329 0.967 sum -9.515 -10.258 -5.901 15.185 Atomic orbital electron populations 1.69585 1.05006 1.26018 1.57384 1.24685 0.95554 0.97573 1.02613 0.86264 0.78557 0.83501 0.77814 1.21327 1.21712 1.21298 1.19211 0.91126 0.83783 1.43161 0.91029 1.42060 1.05198 0.99373 1.87283 1.21048 0.94650 0.85112 0.92464 0.91819 1.24296 0.96143 1.00240 1.02195 1.21392 0.84382 0.95727 0.93765 0.89159 1.45648 1.24105 1.31672 1.33093 1.18100 0.82944 0.83663 0.79924 1.90714 1.73366 1.27542 1.52094 1.19545 0.97698 0.99336 1.00452 1.20880 0.95316 0.92368 0.98065 1.19782 0.94480 1.01775 0.96743 1.21123 0.92624 0.93479 0.95936 1.77676 1.16583 1.16608 1.02997 1.46321 1.21073 1.20094 1.25097 0.71296 1.22794 0.90422 0.93753 0.99297 1.19559 1.00138 1.01726 1.01476 1.20591 0.89512 0.96275 0.93165 1.23400 0.98594 0.98391 0.92914 1.22522 0.98847 0.95958 0.98110 1.22858 0.97459 0.97669 0.99882 1.22480 0.96711 0.96960 0.98027 0.93305 0.78630 0.90933 0.90559 0.75351 0.84309 0.84622 0.79226 0.84442 0.89422 0.91972 0.90757 0.91959 0.91641 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.36 9.98 -15.06 -0.15 -6.51 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -16.20 4.97 -52.99 -0.26 -16.46 16 10 C 0.18 3.43 4.35 -67.48 -0.29 3.14 16 11 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 12 C -0.19 -3.37 7.68 -25.75 -0.20 -3.56 16 13 C 0.15 2.60 4.07 -67.48 -0.27 2.33 16 14 H 0.09 1.54 7.54 -51.93 -0.39 1.15 16 15 N -0.69 -12.23 4.66 -54.42 -0.25 -12.49 16 16 C 0.57 10.17 7.75 -12.48 -0.10 10.07 16 17 O -0.56 -11.06 15.90 5.27 0.08 -10.98 16 18 C -0.17 -2.69 5.86 -105.06 -0.62 -3.30 16 19 C -0.04 -0.70 9.39 -39.60 -0.37 -1.07 16 20 C -0.11 -1.67 10.06 -39.47 -0.40 -2.06 16 21 C 0.12 1.85 7.49 -82.98 -0.62 1.22 16 22 N -0.31 -4.32 12.69 33.30 0.42 -3.89 16 23 N -0.43 -3.84 7.17 30.87 0.22 -3.62 16 24 H 0.44 2.08 8.96 -182.74 -1.64 0.45 16 25 C 0.10 0.83 12.09 -16.58 -0.20 0.63 16 26 C -0.22 -2.85 6.32 -105.24 -0.66 -3.52 16 27 C 0.03 0.37 9.64 -38.69 -0.37 0.00 16 28 C -0.13 -2.08 0.77 -154.71 -0.12 -2.19 16 29 C -0.12 -1.80 7.18 -26.28 -0.19 -1.99 16 30 C -0.14 -1.81 8.08 -25.75 -0.21 -2.02 16 31 C -0.10 -1.36 7.84 -26.28 -0.21 -1.56 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.38 8.95 5.39 -40.82 -0.22 8.73 16 34 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.41 7.43 3.86 -40.82 -0.16 7.28 16 37 H 0.14 2.34 6.27 -52.48 -0.33 2.01 16 38 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 39 H 0.19 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.14 1.77 7.58 -52.48 -0.40 1.37 16 41 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.06 0.98 7.51 -51.93 -0.39 0.59 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -32.65 377.86 -10.77 -43.42 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -7.30 Total: 17.60 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -5.07 Total: -10.72 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.85 Total: -61.75 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.65 -10.77 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078711325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.941 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds