Wall clock time and date at job start Tue Mar 31 2020 23:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99625 * 2 1 4 4 H 1.48500 * 109.47110 * 239.99904 * 3 2 1 5 5 H 1.48498 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46875 * 120.00124 * 3 2 1 7 7 C 1.38813 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00219 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99780 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.88285 * 336.34093 * 10 9 7 12 12 C 1.53946 * 113.66405 * 107.81096 * 10 9 7 13 13 C 1.53958 * 87.29612 * 89.73904 * 12 10 9 14 14 H 1.08994 * 113.65977 * 270.26062 * 13 12 10 15 15 N 1.46498 * 113.66040 * 139.20611 * 13 12 10 16 16 C 1.34771 * 120.00252 * 107.81515 * 15 13 12 17 17 O 1.21599 * 119.99907 * 359.97438 * 16 15 13 18 18 C 1.47522 * 120.00185 * 179.97438 * 16 15 13 19 19 C 1.41040 * 119.38901 * 359.72324 * 18 16 15 20 20 C 1.35188 * 121.65025 * 179.75920 * 19 18 16 21 21 C 1.41387 * 119.93082 * 0.49572 * 20 19 18 22 22 N 1.31927 * 134.39308 * 179.74476 * 21 20 19 23 23 N 1.39917 * 109.06081 * 180.02562 * 22 21 20 24 24 H 0.97002 * 124.98635 * 180.02562 * 23 22 21 25 25 C 1.33816 * 110.02754 * 359.97438 * 23 22 21 26 26 C 1.38545 * 107.83940 * 0.02562 * 25 23 22 27 27 C 1.38213 * 119.39273 * 179.97438 * 18 16 15 28 28 C 1.52907 * 86.78205 * 24.73272 * 13 12 10 29 29 C 1.52909 * 121.13536 * 209.38733 * 28 13 12 30 30 C 1.53952 * 86.78252 * 209.38099 * 29 28 13 31 31 C 1.53064 * 121.17777 * 100.75092 * 28 13 12 32 32 H 0.96995 * 119.99980 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00278 * 0.02562 * 9 7 2 34 34 H 1.09000 * 113.57626 * 204.34112 * 12 10 9 35 35 H 1.08997 * 113.57982 * 335.13359 * 12 10 9 36 36 H 0.97006 * 119.99739 * 287.80421 * 15 13 12 37 37 H 1.07997 * 119.17753 * 0.02562 * 19 18 16 38 38 H 1.08001 * 120.03599 * 180.26601 * 20 19 18 39 39 H 1.07998 * 126.08213 * 179.97438 * 25 23 22 40 40 H 1.08005 * 120.33025 * 359.97438 * 27 18 16 41 41 H 1.09000 * 113.66588 * 94.90895 * 29 28 13 42 42 H 1.09002 * 113.66049 * 323.84790 * 29 28 13 43 43 H 1.09002 * 113.58142 * 139.33437 * 30 29 28 44 44 H 1.09004 * 113.57653 * 270.05037 * 30 29 28 45 45 H 1.09006 * 113.66264 * 36.13819 * 31 28 13 46 46 H 1.09001 * 113.71778 * 265.03884 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 1 3.0671 -3.5637 -0.4037 12 6 1.9927 -4.4081 1.3404 13 6 0.7243 -5.0994 0.8081 14 1 -0.1956 -4.5610 1.0357 15 7 0.6487 -6.5246 1.1387 16 6 -0.2301 -6.9559 2.0649 17 8 -0.9601 -6.1620 2.6266 18 6 -0.3066 -8.3912 2.3974 19 6 0.5420 -9.3015 1.7338 20 6 0.5138 -10.6254 2.0061 21 6 -0.3902 -11.1282 2.9699 22 7 -0.6589 -12.3292 3.4452 23 7 -1.6719 -12.2248 4.4047 24 1 -2.0468 -12.9692 4.9010 25 6 -2.0469 -10.9472 4.5380 26 6 -1.2846 -10.1878 3.6652 27 6 -1.2121 -8.8196 3.3496 28 6 1.2663 -4.8227 -0.5946 29 6 0.3230 -4.6158 -1.7802 30 6 1.4444 -5.1945 -2.6620 31 6 1.9620 -5.9185 -1.4058 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0023 34 1 2.8275 -5.0908 1.4991 35 1 1.8087 -3.7579 2.1956 36 1 1.2312 -7.1579 0.6907 37 1 1.2348 -8.9312 0.9926 38 1 1.1784 -11.2987 1.4852 39 1 -2.8088 -10.5744 5.2065 40 1 -1.8578 -8.1104 3.8463 41 1 0.1014 -3.5685 -1.9854 42 1 -0.5700 -5.2398 -1.7427 43 1 1.0844 -5.8703 -3.4377 44 1 2.1317 -4.4397 -3.0444 45 1 1.5304 -6.9093 -1.2629 46 1 3.0479 -5.9106 -1.3125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078711326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:49 Heat of formation + Delta-G solvation = 119.197326 kcal Electronic energy + Delta-G solvation = -28696.254617 eV Core-core repulsion = 24782.229719 eV Total energy + Delta-G solvation = -3914.024898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.66528 -40.54075 -39.07601 -36.85257 -34.99120 -34.05408 -32.52451 -32.38107 -31.02112 -29.71486 -29.12766 -25.51859 -25.37594 -24.14207 -24.07219 -23.15160 -22.21226 -21.02451 -20.34298 -20.28592 -18.58458 -18.19047 -17.38947 -16.96743 -16.87352 -15.94056 -15.34821 -15.18843 -15.09664 -14.63916 -14.51764 -14.39292 -14.20883 -13.94215 -13.49204 -13.19620 -12.95368 -12.62412 -12.53427 -12.14394 -12.02060 -11.87189 -11.82131 -11.55408 -11.33166 -10.86291 -10.80191 -10.72316 -10.71055 -10.64320 -10.17532 -10.02168 -9.80308 -9.77120 -9.50923 -9.41108 -9.20597 -8.83157 -8.54025 -7.96448 -6.96711 -5.76094 -3.05692 0.17486 1.19143 2.00470 2.24372 2.96067 3.37236 3.45466 3.49939 3.50976 3.79234 3.88543 4.19251 4.54535 4.67554 4.76929 4.82332 4.85540 4.95498 4.99679 5.03808 5.14679 5.24550 5.26237 5.39907 5.49971 5.69898 5.76695 5.85163 5.97155 6.00691 6.02684 6.07507 6.07623 6.12211 6.16719 6.18156 6.29785 6.42669 6.49533 6.58895 6.62284 6.72667 6.77322 6.84744 6.93026 7.14241 7.15348 7.71379 7.78266 8.42024 8.46305 9.53061 10.09627 10.44211 11.45832 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.002320 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.496163 B =12064.997628 C =12861.132059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.700 5.700 10 C 0.197 3.803 11 H 0.068 0.932 12 C -0.182 4.182 13 C 0.140 3.860 14 H 0.115 0.885 15 N -0.710 5.710 16 C 0.557 3.443 17 O -0.542 6.542 18 C -0.173 4.173 19 C -0.049 4.049 20 C -0.111 4.111 21 C 0.119 3.881 22 N -0.311 5.311 23 N -0.424 5.424 24 H 0.445 0.555 25 C 0.103 3.897 26 C -0.220 4.220 27 C 0.035 3.965 28 C -0.124 4.124 29 C -0.125 4.125 30 C -0.133 4.133 31 C -0.116 4.116 32 H 0.257 0.743 33 H 0.387 0.613 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.394 0.606 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.194 0.806 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 -25.916 4.878 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.083 3.917 11 H 0.086 0.914 12 C -0.224 4.224 13 C 0.036 3.964 14 H 0.133 0.867 15 N -0.361 5.361 16 C 0.345 3.655 17 O -0.420 6.420 18 C -0.177 4.177 19 C -0.072 4.072 20 C -0.132 4.132 21 C -0.036 4.036 22 N -0.138 5.138 23 N -0.123 5.123 24 H 0.290 0.710 25 C -0.055 4.055 26 C -0.230 4.230 27 C 0.013 3.987 28 C -0.127 4.127 29 C -0.163 4.163 30 C -0.171 4.171 31 C -0.154 4.154 32 H 0.066 0.934 33 H 0.222 0.778 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.230 0.770 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.211 0.789 40 H 0.159 0.841 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.868 -26.423 5.185 26.992 hybrid contribution -0.069 0.936 0.263 0.974 sum -1.937 -25.488 5.448 26.135 Atomic orbital electron populations 1.69655 1.05088 1.25904 1.57019 1.24760 0.95507 0.97724 1.02670 0.86260 0.78513 0.83505 0.77829 1.21259 1.21729 1.21237 1.19201 0.91017 0.83845 1.43407 0.91061 1.42104 1.05825 0.99105 1.86759 1.20636 0.94510 0.84658 0.91854 0.91411 1.24297 0.96472 0.99687 1.01975 1.22419 0.99703 0.79229 0.95077 0.86742 1.45970 1.39203 1.09895 1.41010 1.18162 0.80209 0.87511 0.79659 1.90798 1.42842 1.56262 1.52090 1.19591 1.02081 0.93462 1.02614 1.20686 0.96699 0.92436 0.97412 1.19715 0.99759 0.95146 0.98628 1.21070 0.96118 0.90109 0.96285 1.77662 1.08094 1.19644 1.08443 1.46340 1.27886 1.07871 1.30204 0.71045 1.22902 0.98965 0.84779 0.98903 1.19576 1.03769 0.95179 1.04448 1.20704 0.93650 0.92261 0.92059 1.23647 0.98469 0.98370 0.92183 1.22627 0.96066 1.02396 0.95203 1.22733 0.99019 0.99538 0.95767 1.22561 0.99789 0.96686 0.96358 0.93358 0.77833 0.91238 0.90921 0.76979 0.85317 0.84898 0.78928 0.84104 0.89910 0.91086 0.92322 0.90089 0.90762 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -17.17 4.85 -52.99 -0.26 -17.42 16 10 C 0.20 3.81 4.36 -67.48 -0.29 3.52 16 11 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 12 C -0.18 -3.24 7.68 -25.75 -0.20 -3.44 16 13 C 0.14 2.35 4.03 -67.48 -0.27 2.08 16 14 H 0.11 2.33 7.46 -51.93 -0.39 1.95 16 15 N -0.71 -9.77 5.20 -54.42 -0.28 -10.05 16 16 C 0.56 8.46 7.75 -12.48 -0.10 8.37 16 17 O -0.54 -10.44 15.86 5.28 0.08 -10.36 16 18 C -0.17 -2.10 5.86 -105.06 -0.62 -2.71 16 19 C -0.05 -0.48 9.39 -39.61 -0.37 -0.85 16 20 C -0.11 -1.08 10.05 -39.47 -0.40 -1.48 16 21 C 0.12 1.29 7.49 -82.97 -0.62 0.67 16 22 N -0.31 -3.19 12.69 33.31 0.42 -2.77 16 23 N -0.42 -2.61 7.17 30.87 0.22 -2.38 16 24 H 0.45 0.95 8.96 -182.73 -1.64 -0.69 16 25 C 0.10 0.62 12.09 -16.57 -0.20 0.42 16 26 C -0.22 -2.16 6.32 -105.24 -0.66 -2.82 16 27 C 0.03 0.39 9.64 -38.70 -0.37 0.02 16 28 C -0.12 -1.96 0.92 -154.63 -0.14 -2.10 16 29 C -0.13 -2.02 7.62 -26.28 -0.20 -2.22 16 30 C -0.13 -1.80 8.08 -25.75 -0.21 -2.01 16 31 C -0.12 -1.43 7.16 -26.20 -0.19 -1.62 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.39 10.23 7.62 -40.82 -0.31 9.92 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.39 4.23 4.96 -40.82 -0.20 4.03 16 37 H 0.13 0.94 6.27 -52.49 -0.33 0.61 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 40 H 0.14 1.53 7.58 -52.48 -0.40 1.14 16 41 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.07 0.77 7.03 -51.93 -0.37 0.40 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -35.24 380.29 -10.84 -46.09 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -7.37 Total: 12.46 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -5.09 Total: -11.36 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.83 Total: -59.83 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.24 -10.84 -46.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078711326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.285 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds