Wall clock time and date at job start Tue Mar 31 2020 23:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99727 * 2 1 4 4 H 1.48501 * 109.47603 * 269.99926 * 3 2 1 5 5 H 1.48500 * 109.47430 * 30.00140 * 3 2 1 6 6 H 1.48504 * 109.46956 * 149.99972 * 3 2 1 7 7 C 1.38806 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99932 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.46510 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.88240 * 23.65147 * 10 9 7 12 12 C 1.53956 * 113.74019 * 252.23035 * 10 9 7 13 13 C 1.53953 * 87.29389 * 270.24710 * 12 10 9 14 14 H 1.08999 * 113.74821 * 220.79028 * 13 12 10 15 15 N 1.46493 * 113.66426 * 89.74049 * 13 12 10 16 16 C 1.34784 * 119.99864 * 107.81197 * 15 13 12 17 17 O 1.21794 * 119.99563 * 359.72448 * 16 15 13 18 18 C 1.41691 * 120.00217 * 179.72787 * 16 15 13 19 19 C 1.39188 * 125.87652 * 179.69265 * 18 16 15 20 20 C 1.38089 * 107.67325 * 179.87169 * 19 18 16 21 21 C 1.39502 * 107.57109 * 0.38708 * 20 19 18 22 22 C 1.40618 * 132.41459 * 179.76261 * 21 20 19 23 23 C 1.36297 * 119.16377 * 180.02562 * 22 21 20 24 24 C 1.39968 * 120.03185 * 359.97438 * 23 22 21 25 25 N 1.30645 * 120.99721 * 0.02753 * 24 23 22 26 26 N 1.37147 * 108.20697 * 359.75650 * 21 20 19 27 27 C 1.52902 * 113.66563 * 155.00364 * 10 9 7 28 28 C 1.52905 * 121.13569 * 215.38698 * 27 10 9 29 29 C 1.53942 * 86.78813 * 100.81641 * 28 27 10 30 30 C 1.52916 * 121.13471 * 323.94037 * 27 10 9 31 31 H 0.97005 * 120.00051 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00256 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.57587 * 155.64504 * 12 10 9 34 34 H 1.08992 * 113.58073 * 24.84888 * 12 10 9 35 35 H 0.97000 * 120.00740 * 287.53890 * 15 13 12 36 36 H 1.07993 * 126.16225 * 0.02562 * 19 18 16 37 37 H 1.08001 * 126.20756 * 180.11048 * 20 19 18 38 38 H 1.08004 * 120.41995 * 359.97278 * 22 21 20 39 39 H 1.07991 * 119.98281 * 179.97438 * 23 22 21 40 40 H 1.08008 * 119.50062 * 180.02562 * 24 23 22 41 41 H 1.09003 * 113.66359 * 215.28995 * 28 27 10 42 42 H 1.09001 * 113.66002 * 346.33746 * 28 27 10 43 43 H 1.09004 * 113.58045 * 270.13325 * 29 28 27 44 44 H 1.09002 * 113.58386 * 139.33760 * 29 28 27 45 45 H 1.09002 * 113.66113 * 13.65362 * 30 27 10 46 46 H 1.08996 * 113.66385 * 144.70888 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0666 -3.5639 0.4023 12 6 1.9955 -4.4086 -1.3426 13 6 0.7265 -5.1005 -0.8124 14 1 0.6699 -6.1611 -1.0574 15 7 -0.5098 -4.3776 -1.1209 16 6 -1.3591 -4.8607 -2.0493 17 8 -1.0962 -5.8956 -2.6353 18 6 -2.5577 -4.1647 -2.3436 19 6 -3.5146 -4.5475 -3.2791 20 6 -4.5235 -3.6050 -3.2565 21 6 -4.1769 -2.6397 -2.3109 22 6 -4.8166 -1.4653 -1.8760 23 6 -4.2234 -0.7029 -0.9145 24 6 -2.9931 -1.0920 -0.3720 25 7 -2.3955 -2.1823 -0.7733 26 7 -2.9722 -2.9933 -1.7592 27 6 1.2658 -4.8229 0.5912 28 6 1.9582 -5.9180 1.4032 29 6 1.4402 -5.1940 2.6591 30 6 0.3201 -4.6163 1.7750 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.8310 -5.0909 -1.4994 34 1 1.8127 -3.7588 -2.1983 35 1 -0.7191 -3.5534 -0.6543 36 1 -3.4762 -5.4250 -3.9074 37 1 -5.4164 -3.6115 -3.8641 38 1 -5.7656 -1.1707 -2.2992 39 1 -4.7027 0.2018 -0.5711 40 1 -2.5309 -0.4816 0.3898 41 1 1.5262 -6.9085 1.2597 42 1 3.0443 -5.9107 1.3106 43 1 2.1270 -4.4389 3.0415 44 1 1.0791 -5.8698 3.4343 45 1 0.0975 -3.5691 1.9795 46 1 -0.5724 -5.2408 1.7361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078742009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:13 Heat of formation + Delta-G solvation = 138.507884 kcal Electronic energy + Delta-G solvation = -30841.119030 eV Core-core repulsion = 26927.931500 eV Total energy + Delta-G solvation = -3913.187530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76821 -40.43388 -38.54093 -36.82870 -35.16280 -33.67658 -33.19200 -31.98342 -30.17190 -29.91196 -28.59119 -25.43668 -25.01104 -24.25004 -24.09780 -23.16840 -22.25251 -21.00410 -20.20121 -19.94807 -18.61304 -17.48299 -17.07801 -16.82172 -15.82188 -15.61658 -15.59201 -15.42904 -15.10788 -14.61736 -14.43501 -14.12676 -13.75597 -13.44131 -13.30116 -12.96084 -12.84060 -12.56492 -12.40619 -12.07113 -12.05951 -11.85607 -11.67671 -11.46825 -11.29994 -10.94643 -10.85540 -10.65229 -10.59666 -10.23256 -10.19474 -10.03524 -9.85377 -9.67208 -9.50766 -9.33882 -8.88569 -8.72219 -8.36111 -7.56851 -7.04624 -5.88580 -3.14804 0.67149 1.24061 2.21614 2.52711 3.36006 3.41768 3.43194 3.44550 3.69144 3.83525 4.41147 4.48929 4.65106 4.82105 4.83896 5.05904 5.07447 5.10177 5.23052 5.30103 5.37327 5.43607 5.48570 5.63054 5.71128 5.85590 5.91173 5.95097 5.97190 6.02611 6.06296 6.07334 6.13226 6.20065 6.22934 6.35868 6.37077 6.43903 6.57021 6.68239 6.75690 6.78193 6.85439 6.93992 7.02083 7.23830 7.64015 7.91357 8.16467 8.31959 8.72668 9.43583 9.99904 10.35904 11.32871 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008130 B = 0.005995 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3443.009077 B = 4669.318649 C = 6969.291967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.701 5.701 10 C 0.189 3.811 11 H 0.066 0.934 12 C -0.186 4.186 13 C 0.135 3.865 14 H 0.091 0.909 15 N -0.694 5.694 16 C 0.587 3.413 17 O -0.555 6.555 18 C -0.033 4.033 19 C -0.085 4.085 20 C -0.186 4.186 21 C 0.007 3.993 22 C -0.030 4.030 23 C -0.188 4.188 24 C 0.160 3.840 25 N -0.243 5.243 26 N -0.234 5.234 27 C -0.130 4.130 28 C -0.106 4.106 29 C -0.134 4.134 30 C -0.125 4.125 31 H 0.250 0.750 32 H 0.387 0.613 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.418 0.582 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.207 0.793 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 -5.243 0.573 10.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.342 5.342 10 C 0.076 3.924 11 H 0.084 0.916 12 C -0.228 4.228 13 C 0.030 3.970 14 H 0.109 0.891 15 N -0.349 5.349 16 C 0.376 3.624 17 O -0.435 6.435 18 C -0.150 4.150 19 C -0.110 4.110 20 C -0.212 4.212 21 C -0.106 4.106 22 C -0.056 4.056 23 C -0.211 4.211 24 C -0.032 4.032 25 N -0.051 5.051 26 N 0.004 4.996 27 C -0.133 4.133 28 C -0.144 4.144 29 C -0.171 4.171 30 C -0.163 4.163 31 H 0.060 0.940 32 H 0.223 0.777 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.260 0.740 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.223 0.777 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.631 -6.197 0.618 9.850 hybrid contribution -0.653 1.990 -0.174 2.101 sum -8.283 -4.208 0.444 9.301 Atomic orbital electron populations 1.69674 1.04949 1.24884 1.58073 1.24632 0.95614 0.97358 1.02829 0.86179 0.78771 0.83738 0.77366 1.22004 1.21838 1.20880 1.19293 0.91167 0.83853 1.42363 0.91062 1.42217 1.05837 0.99251 1.86873 1.20900 0.94574 0.84890 0.91998 0.91551 1.24278 0.96674 1.00266 1.01575 1.21632 0.83915 0.96038 0.95449 0.89075 1.45935 1.20515 1.28233 1.40172 1.15763 0.82090 0.84410 0.80123 1.90796 1.76436 1.23990 1.52245 1.19455 1.00986 0.89743 1.04819 1.21217 0.92153 1.00143 0.97486 1.20934 1.02010 0.95690 1.02516 1.19437 0.90159 0.99308 1.01737 1.20839 0.99442 0.90827 0.94540 1.21578 0.97203 1.02517 0.99802 1.24286 0.91360 0.91086 0.96512 1.75898 1.20050 1.06548 1.02622 1.46179 1.13831 1.15790 1.23791 1.23568 0.98679 0.98840 0.92179 1.22510 0.99874 0.96667 0.95355 1.22753 0.98841 0.99598 0.95926 1.22549 0.96210 1.01971 0.95553 0.94041 0.77658 0.90351 0.91136 0.73983 0.82184 0.83092 0.83220 0.83459 0.77691 0.90287 0.91309 0.90062 0.92195 0.90368 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -23.87 12.31 55.49 0.68 -23.19 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.24 -6.21 9.97 -15.06 -0.15 -6.36 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -16.87 4.74 -52.99 -0.25 -17.12 16 10 C 0.19 3.85 4.36 -67.48 -0.29 3.56 16 11 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 12 C -0.19 -3.63 7.69 -25.74 -0.20 -3.83 16 13 C 0.14 2.60 4.12 -67.48 -0.28 2.32 16 14 H 0.09 1.73 7.46 -51.93 -0.39 1.34 16 15 N -0.69 -14.36 4.92 -56.23 -0.28 -14.64 16 16 C 0.59 12.32 7.60 -14.94 -0.11 12.21 16 17 O -0.55 -12.33 16.39 5.10 0.08 -12.25 16 18 C -0.03 -0.63 6.84 -83.74 -0.57 -1.21 16 19 C -0.08 -1.34 10.49 -39.28 -0.41 -1.75 16 20 C -0.19 -2.53 10.92 -39.17 -0.43 -2.95 16 21 C 0.01 0.11 6.80 -84.12 -0.57 -0.46 16 22 C -0.03 -0.35 10.11 -39.38 -0.40 -0.75 16 23 C -0.19 -2.28 10.04 -39.63 -0.40 -2.67 16 24 C 0.16 2.55 11.13 -17.41 -0.19 2.35 16 25 N -0.24 -4.62 9.68 30.61 0.30 -4.32 16 26 N -0.23 -4.29 4.01 -8.28 -0.03 -4.32 16 27 C -0.13 -2.29 0.78 -154.71 -0.12 -2.41 16 28 C -0.11 -1.51 7.84 -26.29 -0.21 -1.72 16 29 C -0.13 -1.94 8.08 -25.75 -0.21 -2.15 16 30 C -0.13 -2.15 7.26 -26.28 -0.19 -2.34 16 31 H 0.25 6.17 8.31 -40.82 -0.34 5.83 16 32 H 0.39 9.48 5.14 -40.82 -0.21 9.27 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.42 8.95 3.74 -40.82 -0.15 8.79 16 36 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 37 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.21 3.26 7.46 -52.48 -0.39 2.87 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -30.79 377.30 -9.82 -40.61 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -6.15 Total: 21.87 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -4.83 Total: -8.49 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.42 Total: -63.60 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.79 -9.82 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078742009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.120 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds