Wall clock time and date at job start Tue Mar 31 2020 23:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08997 * 112.88651 * 334.39012 * 10 9 7 12 12 C 1.53955 * 113.66415 * 105.73736 * 10 9 7 13 13 C 1.54241 * 87.18863 * 89.78569 * 12 10 9 14 14 H 1.09004 * 113.66694 * 270.26295 * 13 12 10 15 15 N 1.46507 * 113.75079 * 139.21780 * 13 12 10 16 16 C 1.34771 * 120.00138 * 107.77207 * 15 13 12 17 17 O 1.21791 * 120.00089 * 359.97438 * 16 15 13 18 18 C 1.41701 * 119.99871 * 180.02562 * 16 15 13 19 19 C 1.39182 * 125.87458 * 179.69259 * 18 16 15 20 20 C 1.38085 * 107.67770 * 179.83492 * 19 18 16 21 21 C 1.39500 * 107.56641 * 0.42160 * 20 19 18 22 22 C 1.40620 * 132.41510 * 179.73436 * 21 20 19 23 23 C 1.36290 * 119.16436 * 179.97438 * 22 21 20 24 24 C 1.39969 * 120.03566 * 0.03388 * 23 22 21 25 25 N 1.30648 * 120.99220 * 359.96629 * 24 23 22 26 26 N 1.37156 * 108.20667 * 359.73698 * 21 20 19 27 27 C 1.52905 * 113.66082 * 203.04543 * 10 9 7 28 28 C 1.52914 * 121.14057 * 144.70758 * 27 10 9 29 29 C 1.53950 * 86.78444 * 209.37767 * 28 27 10 30 30 C 1.52911 * 121.13968 * 36.14398 * 27 10 9 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.57527 * 204.34301 * 12 10 9 34 34 H 1.08994 * 113.57708 * 335.12760 * 12 10 9 35 35 H 0.97000 * 119.99484 * 287.77040 * 15 13 12 36 36 H 1.08008 * 126.16094 * 359.97438 * 19 18 16 37 37 H 1.08004 * 126.21686 * 180.15924 * 20 19 18 38 38 H 1.08003 * 120.41832 * 359.97438 * 22 21 20 39 39 H 1.08001 * 119.98314 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.49882 * 179.97438 * 24 23 22 41 41 H 1.09000 * 113.66024 * 323.85226 * 28 27 10 42 42 H 1.08994 * 113.66194 * 94.90621 * 28 27 10 43 43 H 1.08995 * 113.58271 * 270.13143 * 29 28 27 44 44 H 1.08996 * 113.57661 * 139.32983 * 29 28 27 45 45 H 1.09005 * 113.65882 * 265.09435 * 30 27 10 46 46 H 1.08996 * 113.66010 * 36.14620 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0561 -3.5723 -0.4225 12 6 2.0295 -4.3796 1.3663 13 6 0.7454 -5.0823 0.8800 14 1 -0.1685 -4.5390 1.1202 15 7 0.6764 -6.5007 1.2402 16 6 -0.1787 -6.9121 2.1973 17 8 -0.8937 -6.1046 2.7630 18 6 -0.2450 -8.2839 2.5461 19 6 -1.0746 -8.8398 3.5155 20 6 -0.8361 -10.1996 3.5419 21 6 0.1489 -10.4728 2.5926 22 6 0.7780 -11.6659 2.1949 23 6 1.7265 -11.6226 1.2172 24 6 2.0644 -10.4015 0.6224 25 7 1.4822 -9.2908 0.9889 26 7 0.5024 -9.2925 1.9900 27 6 1.2512 -4.8341 -0.5416 28 6 1.9236 -5.9464 -1.3471 29 6 0.5768 -6.1158 -2.0734 30 6 0.2776 -4.6509 -1.7064 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.8684 -5.0592 1.5163 34 1 1.8690 -3.7113 2.2122 35 1 1.2462 -7.1437 0.7899 36 1 -1.7798 -8.3043 4.1341 37 1 -1.3207 -10.9202 4.1841 38 1 0.5129 -12.6047 2.6585 39 1 2.2178 -12.5310 0.9013 40 1 2.8175 -10.3771 -0.1514 41 1 2.7277 -5.5939 -1.9931 42 1 2.2085 -6.8103 -0.7467 43 1 -0.0909 -6.8308 -1.5927 44 1 0.6778 -6.2848 -3.1454 45 1 -0.7523 -4.4799 -1.3930 46 1 0.6191 -3.9343 -2.4533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078742010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:16 Heat of formation + Delta-G solvation = 136.892419 kcal Electronic energy + Delta-G solvation = -29605.610441 eV Core-core repulsion = 25692.352860 eV Total energy + Delta-G solvation = -3913.257582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.28923 -40.48368 -38.82529 -37.37347 -35.00708 -34.17863 -33.54263 -32.26878 -30.76179 -29.79967 -28.91907 -25.51326 -25.42501 -24.42505 -24.08328 -23.48866 -22.58257 -21.23769 -20.51323 -20.07075 -18.91005 -17.64885 -17.47668 -17.02250 -16.34010 -16.11775 -15.95448 -15.72396 -15.22199 -14.88949 -14.44140 -14.23148 -13.99651 -13.91127 -13.52106 -13.17411 -12.88212 -12.65666 -12.57665 -12.42599 -12.35792 -12.03355 -11.84783 -11.64282 -11.44937 -11.17797 -10.97870 -10.89807 -10.79263 -10.59245 -10.17715 -10.03440 -9.91704 -9.80702 -9.53170 -9.35267 -9.20818 -8.78728 -8.56543 -8.05192 -6.92463 -5.73627 -3.02890 0.04283 0.66152 1.55867 2.05572 2.86476 3.46028 3.49730 3.50541 3.51320 3.53281 3.81058 4.08757 4.20491 4.47399 4.57815 4.80550 4.86591 4.93780 4.95887 5.01314 5.05993 5.21753 5.25989 5.38747 5.40080 5.51084 5.59657 5.68710 5.76493 5.84151 5.85695 5.96384 6.06313 6.09434 6.10677 6.15812 6.26625 6.34162 6.44992 6.47176 6.54582 6.71951 6.77300 6.84598 6.91906 7.15109 7.21998 7.74021 7.84302 8.44531 8.45054 9.55587 10.13051 10.47852 11.48529 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002802 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.646675 B = 9989.985574 C =10698.902351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.187 3.813 11 H 0.066 0.934 12 C -0.182 4.182 13 C 0.151 3.849 14 H 0.116 0.884 15 N -0.709 5.709 16 C 0.579 3.421 17 O -0.534 6.534 18 C -0.016 4.016 19 C -0.082 4.082 20 C -0.170 4.170 21 C -0.003 4.003 22 C -0.007 4.007 23 C -0.205 4.205 24 C 0.141 3.859 25 N -0.280 5.280 26 N -0.235 5.235 27 C -0.127 4.127 28 C -0.110 4.110 29 C -0.140 4.140 30 C -0.113 4.113 31 H 0.256 0.744 32 H 0.387 0.613 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.197 0.803 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -29.452 1.095 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.074 3.926 11 H 0.085 0.915 12 C -0.225 4.225 13 C 0.047 3.953 14 H 0.134 0.866 15 N -0.362 5.362 16 C 0.366 3.634 17 O -0.412 6.412 18 C -0.133 4.133 19 C -0.107 4.107 20 C -0.196 4.196 21 C -0.114 4.114 22 C -0.033 4.033 23 C -0.228 4.228 24 C -0.051 4.051 25 N -0.089 5.089 26 N 0.001 4.999 27 C -0.129 4.129 28 C -0.148 4.148 29 C -0.178 4.178 30 C -0.151 4.151 31 H 0.066 0.934 32 H 0.221 0.779 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.244 0.756 36 H 0.185 0.815 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.214 0.786 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.981 -27.530 1.021 27.710 hybrid contribution 0.427 -0.398 0.065 0.587 sum 3.408 -27.928 1.086 28.156 Atomic orbital electron populations 1.69673 1.05089 1.25731 1.57213 1.24760 0.95509 0.97706 1.02788 0.86183 0.78662 0.83849 0.77435 1.21751 1.21786 1.20760 1.19256 0.91038 0.83891 1.43120 0.91049 1.42097 1.05797 0.99102 1.86866 1.20777 0.94650 0.85051 0.92149 0.91550 1.24355 0.96058 0.99613 1.02454 1.22356 0.99850 0.79617 0.93485 0.86608 1.46252 1.40694 1.10653 1.38581 1.15813 0.81073 0.85708 0.80781 1.90900 1.43293 1.53631 1.53349 1.19765 1.01657 0.88302 1.03617 1.21395 0.98709 0.93703 0.96856 1.21076 1.00530 0.96412 1.01594 1.19419 1.03371 0.87032 1.01553 1.20950 0.91974 0.96669 0.93745 1.21425 1.01774 0.99402 1.00176 1.24030 0.95699 0.88589 0.96780 1.75452 1.02742 1.26562 1.04154 1.45772 1.23824 1.07524 1.22792 1.23462 0.98411 0.98019 0.93015 1.22513 0.96952 0.97275 0.98088 1.22842 0.97327 0.98079 0.99518 1.22552 0.99269 0.95430 0.97839 0.93437 0.77883 0.91491 0.90794 0.75625 0.81528 0.82539 0.82724 0.83166 0.78618 0.89638 0.92212 0.91176 0.92017 0.91759 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.70 -17.83 5.11 -52.99 -0.27 -18.10 16 10 C 0.19 3.84 4.35 -67.48 -0.29 3.55 16 11 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 12 C -0.18 -3.53 7.71 -25.59 -0.20 -3.73 16 13 C 0.15 2.82 4.05 -67.32 -0.27 2.55 16 14 H 0.12 2.53 7.46 -51.93 -0.39 2.15 16 15 N -0.71 -11.81 5.27 -56.08 -0.30 -12.11 16 16 C 0.58 10.30 7.60 -14.94 -0.11 10.18 16 17 O -0.53 -11.28 16.39 5.11 0.08 -11.20 16 18 C -0.02 -0.24 6.84 -83.75 -0.57 -0.82 16 19 C -0.08 -1.00 10.49 -39.29 -0.41 -1.41 16 20 C -0.17 -1.60 10.92 -39.17 -0.43 -2.03 16 21 C 0.00 -0.03 6.80 -84.12 -0.57 -0.60 16 22 C -0.01 -0.04 10.11 -39.38 -0.40 -0.44 16 23 C -0.20 -0.98 10.04 -39.63 -0.40 -1.38 16 24 C 0.14 0.90 11.29 -17.41 -0.20 0.70 16 25 N -0.28 -3.00 9.68 30.61 0.30 -2.70 16 26 N -0.24 -2.92 4.01 -8.28 -0.03 -2.96 16 27 C -0.13 -2.19 0.91 -154.71 -0.14 -2.33 16 28 C -0.11 -1.53 7.47 -26.28 -0.20 -1.73 16 29 C -0.14 -1.94 8.08 -25.75 -0.21 -2.15 16 30 C -0.11 -1.94 7.46 -26.28 -0.20 -2.14 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.39 10.57 7.78 -40.82 -0.32 10.26 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.40 5.99 4.32 -40.82 -0.18 5.81 16 36 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16 39 H 0.15 0.21 8.06 -52.49 -0.42 -0.22 16 40 H 0.20 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.76 6.42 -51.93 -0.33 0.43 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -35.36 381.49 -9.87 -45.23 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -6.26 Total: 15.32 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -4.84 Total: -9.12 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.42 Total: -63.65 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.36 -9.87 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078742010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.124 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds