Wall clock time and date at job start Tue Mar 31 2020 23:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47164 * 270.00207 * 3 2 1 5 5 H 1.48499 * 109.47333 * 30.00175 * 3 2 1 6 6 H 1.48501 * 109.47035 * 150.00461 * 3 2 1 7 7 C 1.38814 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99686 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00012 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88575 * 26.84129 * 10 9 7 12 12 C 1.53952 * 113.66221 * 255.49650 * 10 9 7 13 13 C 1.53950 * 87.37851 * 270.12719 * 12 10 9 14 14 H 1.09006 * 113.66206 * 89.78396 * 13 12 10 15 15 N 1.46500 * 113.66037 * 220.83072 * 13 12 10 16 16 C 1.34782 * 120.00299 * 255.49462 * 15 13 12 17 17 O 1.21784 * 119.99659 * 0.02562 * 16 15 13 18 18 C 1.41694 * 120.00046 * 180.02562 * 16 15 13 19 19 C 1.39180 * 125.87669 * 180.02562 * 18 16 15 20 20 C 1.38085 * 107.68103 * 179.97438 * 19 18 16 21 21 C 1.39512 * 107.56636 * 359.97438 * 20 19 18 22 22 C 1.40620 * 132.41040 * 180.02562 * 21 20 19 23 23 C 1.36297 * 119.15758 * 179.33461 * 22 21 20 24 24 C 1.39964 * 120.03672 * 0.51741 * 23 22 21 25 25 N 1.30644 * 120.99270 * 359.68215 * 24 23 22 26 26 N 1.37158 * 108.20330 * 359.77066 * 21 20 19 27 27 C 1.52909 * 113.74403 * 158.26919 * 10 9 7 28 28 C 1.52907 * 121.13536 * 323.86391 * 27 10 9 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 10 30 30 C 1.52915 * 121.13447 * 215.30543 * 27 10 9 31 31 H 0.97000 * 119.99946 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00154 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.58142 * 24.77271 * 12 10 9 34 34 H 1.09004 * 113.57653 * 155.48871 * 12 10 9 35 35 H 0.96999 * 120.00029 * 75.50463 * 15 13 12 36 36 H 1.08002 * 126.15994 * 359.92247 * 19 18 16 37 37 H 1.07993 * 126.21540 * 180.02562 * 20 19 18 38 38 H 1.08004 * 120.41520 * 359.96701 * 22 21 20 39 39 H 1.07993 * 119.97853 * 180.17716 * 23 22 21 40 40 H 1.08003 * 119.50214 * 179.65203 * 24 23 22 41 41 H 1.08994 * 113.66316 * 323.85618 * 28 27 10 42 42 H 1.08997 * 113.66044 * 94.91866 * 28 27 10 43 43 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 44 44 H 1.08990 * 113.65166 * 139.34938 * 29 28 27 45 45 H 1.09004 * 113.66330 * 265.09006 * 30 27 10 46 46 H 1.09001 * 113.65876 * 36.13855 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0464 -3.5761 0.4510 12 6 2.0602 -4.3678 -1.3671 13 6 0.7691 -5.0774 -0.9202 14 1 -0.1402 -4.5342 -1.1776 15 7 0.7152 -6.4922 -1.2968 16 6 -0.0646 -6.8873 -2.3226 17 8 -0.7240 -6.0681 -2.9368 18 6 -0.1170 -8.2557 -2.6865 19 6 -0.8762 -8.7964 -3.7202 20 6 -0.6456 -10.1576 -3.7422 21 6 0.2573 -10.4484 -2.7192 22 6 0.8406 -11.6511 -2.2825 23 6 1.7189 -11.6232 -1.2406 24 6 2.0223 -10.4099 -0.6123 25 7 1.4795 -9.2909 -1.0124 26 7 0.5774 -9.2756 -2.0841 27 6 1.2404 -4.8403 0.5166 28 6 0.2395 -4.6696 1.6600 29 6 0.5323 -6.1376 2.0199 30 6 1.8954 -5.9595 1.3270 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.9170 -3.6925 -2.2107 34 1 2.9039 -5.0440 -1.5053 35 1 1.2407 -7.1446 -0.8077 36 1 -1.5287 -8.2497 -4.3848 37 1 -1.0839 -10.8680 -4.4274 38 1 0.6034 -12.5836 -2.7731 39 1 2.1768 -12.5386 -0.8963 40 1 2.7152 -10.3986 0.2161 41 1 0.5623 -3.9598 2.4216 42 1 -0.7829 -4.4970 1.3242 43 1 -0.1229 -6.8488 1.5168 44 1 0.6084 -6.3181 3.0920 45 1 2.1957 -6.8173 0.7252 46 1 2.6837 -5.6121 1.9950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078742011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:20 Heat of formation + Delta-G solvation = 137.046275 kcal Electronic energy + Delta-G solvation = -29603.914297 eV Core-core repulsion = 25690.663387 eV Total energy + Delta-G solvation = -3913.250910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.28806 -40.49048 -38.82629 -37.37333 -35.01271 -34.17852 -33.54410 -32.26925 -30.76214 -29.80171 -28.91889 -25.51834 -25.42965 -24.43168 -24.08558 -23.48904 -22.58315 -21.23592 -20.51035 -20.06864 -18.90860 -17.64850 -17.47398 -17.02499 -16.34034 -16.11911 -15.95956 -15.72976 -15.22499 -14.88889 -14.45002 -14.23271 -13.99472 -13.91371 -13.52140 -13.17679 -12.88697 -12.67831 -12.57842 -12.41546 -12.34731 -12.04194 -11.84202 -11.63816 -11.45500 -11.17743 -10.97868 -10.88638 -10.80763 -10.59836 -10.17779 -10.03896 -9.92141 -9.78733 -9.53495 -9.36657 -9.20839 -8.78536 -8.56794 -8.05147 -6.92319 -5.73566 -3.02763 0.04247 0.66188 1.55821 2.05649 2.86455 3.46451 3.49979 3.50490 3.51419 3.53073 3.81073 4.08768 4.20500 4.47377 4.57767 4.79056 4.86627 4.93098 4.95912 5.00320 5.05941 5.21090 5.25972 5.38581 5.39219 5.51986 5.59726 5.68474 5.76482 5.83862 5.85540 5.96057 6.05903 6.09160 6.10129 6.15099 6.26603 6.34087 6.44809 6.46803 6.54018 6.71601 6.77517 6.84583 6.92025 7.15384 7.22021 7.74266 7.84271 8.44643 8.45207 9.55707 10.13158 10.48018 11.48614 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002808 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.509012 B = 9968.221744 C =10709.419759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.187 3.813 11 H 0.066 0.934 12 C -0.182 4.182 13 C 0.152 3.848 14 H 0.115 0.885 15 N -0.709 5.709 16 C 0.579 3.421 17 O -0.534 6.534 18 C -0.016 4.016 19 C -0.082 4.082 20 C -0.170 4.170 21 C -0.003 4.003 22 C -0.007 4.007 23 C -0.205 4.205 24 C 0.141 3.859 25 N -0.280 5.280 26 N -0.235 5.235 27 C -0.125 4.125 28 C -0.114 4.114 29 C -0.140 4.140 30 C -0.111 4.111 31 H 0.256 0.744 32 H 0.387 0.613 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.405 0.595 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.197 0.803 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -29.486 -1.067 29.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.074 3.926 11 H 0.084 0.916 12 C -0.225 4.225 13 C 0.048 3.952 14 H 0.133 0.867 15 N -0.362 5.362 16 C 0.366 3.634 17 O -0.411 6.411 18 C -0.133 4.133 19 C -0.107 4.107 20 C -0.196 4.196 21 C -0.114 4.114 22 C -0.033 4.033 23 C -0.228 4.228 24 C -0.051 4.051 25 N -0.089 5.089 26 N 0.001 4.999 27 C -0.128 4.128 28 C -0.151 4.151 29 C -0.178 4.178 30 C -0.149 4.149 31 H 0.066 0.934 32 H 0.221 0.779 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.185 0.815 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.214 0.786 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.904 -27.562 -0.987 27.732 hybrid contribution 0.410 -0.399 -0.073 0.577 sum 3.314 -27.961 -1.060 28.177 Atomic orbital electron populations 1.69671 1.05091 1.25727 1.57238 1.24759 0.95507 0.97702 1.02792 0.86185 0.78597 0.83833 0.77517 1.21708 1.21808 1.20777 1.19249 0.91043 0.83883 1.43101 0.91050 1.42088 1.05789 0.99093 1.86917 1.20776 0.94551 0.85034 0.92262 0.91613 1.24302 0.95986 0.99614 1.02573 1.22307 0.99874 0.79717 0.93331 0.86739 1.46260 1.46003 1.10681 1.33306 1.15808 0.80545 0.85770 0.81263 1.90900 1.44244 1.52683 1.53296 1.19766 1.04133 0.88059 1.01376 1.21393 0.98971 0.93855 0.96442 1.21077 1.01999 0.96291 1.00244 1.19422 1.04800 0.87123 1.00038 1.20952 0.91866 0.96529 0.93986 1.21424 1.02492 0.99510 0.99355 1.24027 0.94972 0.88519 0.97579 1.75450 1.05316 1.26383 1.01768 1.45777 1.27002 1.07494 1.19647 1.23470 0.98400 0.97979 0.92928 1.22555 0.99121 0.95424 0.98027 1.22845 0.97225 0.98038 0.99669 1.22523 0.96923 0.97235 0.98197 0.93441 0.77889 0.90804 0.91519 0.75617 0.81529 0.82539 0.82721 0.83167 0.78618 0.89333 0.91734 0.91164 0.91983 0.92182 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.78 9.98 -15.06 -0.15 -6.93 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.70 -17.85 5.13 -52.99 -0.27 -18.12 16 10 C 0.19 3.85 4.35 -67.48 -0.29 3.55 16 11 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 12 C -0.18 -3.55 7.68 -25.75 -0.20 -3.75 16 13 C 0.15 2.84 4.02 -67.40 -0.27 2.57 16 14 H 0.11 2.50 7.54 -51.93 -0.39 2.11 16 15 N -0.71 -11.83 5.30 -56.15 -0.30 -12.13 16 16 C 0.58 10.31 7.60 -14.94 -0.11 10.20 16 17 O -0.53 -11.29 16.43 5.11 0.08 -11.21 16 18 C -0.02 -0.24 6.84 -83.75 -0.57 -0.81 16 19 C -0.08 -1.00 10.49 -39.29 -0.41 -1.41 16 20 C -0.17 -1.60 10.92 -39.16 -0.43 -2.03 16 21 C 0.00 -0.03 6.80 -84.11 -0.57 -0.60 16 22 C -0.01 -0.04 10.12 -39.38 -0.40 -0.44 16 23 C -0.20 -0.98 10.04 -39.63 -0.40 -1.38 16 24 C 0.14 0.90 11.29 -17.41 -0.20 0.70 16 25 N -0.28 -3.00 9.68 30.61 0.30 -2.70 16 26 N -0.24 -2.93 4.01 -8.28 -0.03 -2.96 16 27 C -0.13 -2.16 0.92 -154.63 -0.14 -2.30 16 28 C -0.11 -1.93 7.44 -26.28 -0.20 -2.13 16 29 C -0.14 -1.93 8.08 -25.75 -0.21 -2.13 16 30 C -0.11 -1.53 7.45 -26.28 -0.20 -1.73 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.39 10.56 7.75 -40.82 -0.32 10.25 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.99 4.26 -40.82 -0.17 5.82 16 36 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16 39 H 0.15 0.21 8.06 -52.49 -0.42 -0.22 16 40 H 0.20 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.76 6.42 -51.93 -0.33 0.43 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -35.41 381.49 -9.87 -45.28 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -6.26 Total: 15.25 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -4.84 Total: -9.06 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.42 Total: -63.70 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.41 -9.87 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078742011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.326 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds