Wall clock time and date at job start Tue Mar 31 2020 23:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47164 * 270.00207 * 3 2 1 5 5 H 1.48499 * 109.47333 * 30.00175 * 3 2 1 6 6 H 1.48501 * 109.47035 * 150.00461 * 3 2 1 7 7 C 1.38814 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99686 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00012 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88575 * 26.84129 * 10 9 7 12 12 C 1.53952 * 113.66221 * 255.49650 * 10 9 7 13 13 C 1.53950 * 87.37851 * 270.12719 * 12 10 9 14 14 H 1.09006 * 113.66206 * 89.78396 * 13 12 10 15 15 N 1.46500 * 113.66037 * 220.83072 * 13 12 10 16 16 C 1.34782 * 120.00299 * 255.49462 * 15 13 12 17 17 O 1.21784 * 119.99659 * 0.02562 * 16 15 13 18 18 C 1.41694 * 120.00046 * 180.02562 * 16 15 13 19 19 C 1.39180 * 125.87669 * 180.02562 * 18 16 15 20 20 C 1.38085 * 107.68103 * 179.97438 * 19 18 16 21 21 C 1.39512 * 107.56636 * 359.97438 * 20 19 18 22 22 C 1.40620 * 132.41040 * 180.02562 * 21 20 19 23 23 C 1.36297 * 119.15758 * 179.33461 * 22 21 20 24 24 C 1.39964 * 120.03672 * 0.51741 * 23 22 21 25 25 N 1.30644 * 120.99270 * 359.68215 * 24 23 22 26 26 N 1.37158 * 108.20330 * 359.77066 * 21 20 19 27 27 C 1.52909 * 113.74403 * 158.26919 * 10 9 7 28 28 C 1.52907 * 121.13536 * 323.86391 * 27 10 9 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 10 30 30 C 1.52915 * 121.13447 * 215.30543 * 27 10 9 31 31 H 0.97000 * 119.99946 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00154 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.58142 * 24.77271 * 12 10 9 34 34 H 1.09004 * 113.57653 * 155.48871 * 12 10 9 35 35 H 0.96999 * 120.00029 * 75.50463 * 15 13 12 36 36 H 1.08002 * 126.15994 * 359.92247 * 19 18 16 37 37 H 1.07993 * 126.21540 * 180.02562 * 20 19 18 38 38 H 1.08004 * 120.41520 * 359.96701 * 22 21 20 39 39 H 1.07993 * 119.97853 * 180.17716 * 23 22 21 40 40 H 1.08003 * 119.50214 * 179.65203 * 24 23 22 41 41 H 1.08994 * 113.66316 * 323.85618 * 28 27 10 42 42 H 1.08997 * 113.66044 * 94.91866 * 28 27 10 43 43 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 44 44 H 1.08990 * 113.65166 * 139.34938 * 29 28 27 45 45 H 1.09004 * 113.66330 * 265.09006 * 30 27 10 46 46 H 1.09001 * 113.65876 * 36.13855 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0464 -3.5761 0.4510 12 6 2.0602 -4.3678 -1.3671 13 6 0.7691 -5.0774 -0.9202 14 1 -0.1402 -4.5342 -1.1776 15 7 0.7152 -6.4922 -1.2968 16 6 -0.0646 -6.8873 -2.3226 17 8 -0.7240 -6.0681 -2.9368 18 6 -0.1170 -8.2557 -2.6865 19 6 -0.8762 -8.7964 -3.7202 20 6 -0.6456 -10.1576 -3.7422 21 6 0.2573 -10.4484 -2.7192 22 6 0.8406 -11.6511 -2.2825 23 6 1.7189 -11.6232 -1.2406 24 6 2.0223 -10.4099 -0.6123 25 7 1.4795 -9.2909 -1.0124 26 7 0.5774 -9.2756 -2.0841 27 6 1.2404 -4.8403 0.5166 28 6 0.2395 -4.6696 1.6600 29 6 0.5323 -6.1376 2.0199 30 6 1.8954 -5.9595 1.3270 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.9170 -3.6925 -2.2107 34 1 2.9039 -5.0440 -1.5053 35 1 1.2407 -7.1446 -0.8077 36 1 -1.5287 -8.2497 -4.3848 37 1 -1.0839 -10.8680 -4.4274 38 1 0.6034 -12.5836 -2.7731 39 1 2.1768 -12.5386 -0.8963 40 1 2.7152 -10.3986 0.2161 41 1 0.5623 -3.9598 2.4216 42 1 -0.7829 -4.4970 1.3242 43 1 -0.1229 -6.8488 1.5168 44 1 0.6084 -6.3181 3.0920 45 1 2.1957 -6.8173 0.7252 46 1 2.6837 -5.6121 1.9950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078742011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:19 Heat of formation + Delta-G solvation = 113.092255 kcal Electronic energy + Delta-G solvation = -29604.953022 eV Core-core repulsion = 25690.663387 eV Total energy + Delta-G solvation = -3914.289634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.06979 -41.91660 -40.07661 -38.11517 -36.61819 -35.62873 -34.56806 -33.84165 -31.64204 -31.48729 -29.90798 -26.83763 -26.66852 -25.76663 -25.41870 -24.76766 -23.79729 -22.21078 -21.56181 -21.53497 -20.02631 -19.39082 -18.61493 -18.16842 -17.35630 -16.99844 -16.91277 -16.85217 -16.68593 -16.24010 -15.97340 -15.56082 -15.47796 -14.99091 -14.56913 -14.39692 -14.16625 -13.98643 -13.81294 -13.42719 -13.33595 -13.22057 -13.15470 -13.04672 -12.99178 -12.81788 -12.60392 -12.19754 -12.04186 -11.82233 -11.73308 -11.59395 -11.41091 -11.39037 -11.11859 -10.94712 -10.70103 -10.10314 -9.93954 -9.02609 -8.81462 -7.95612 -5.25478 -0.47968 -0.10058 0.83850 1.22814 1.45265 1.48230 1.56345 2.21430 2.23258 2.38485 2.53786 3.17261 3.33723 3.35860 3.44483 3.59383 3.71538 3.80483 3.84645 3.95206 3.96610 4.00124 4.14503 4.20312 4.36066 4.47142 4.47833 4.53772 4.68978 4.75082 4.77045 4.80226 4.89511 4.94039 5.01219 5.02921 5.04542 5.12158 5.15661 5.21498 5.24869 5.35285 5.49665 5.51504 5.61807 5.65131 5.68009 6.25523 6.46292 6.64157 7.16253 7.30723 8.05931 8.29713 9.27891 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002808 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.509012 B = 9968.221744 C =10709.419759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.715 5.715 10 C 0.174 3.826 11 H 0.076 0.924 12 C -0.173 4.173 13 C 0.156 3.844 14 H 0.069 0.931 15 N -0.699 5.699 16 C 0.575 3.425 17 O -0.590 6.590 18 C -0.077 4.077 19 C -0.090 4.090 20 C -0.173 4.173 21 C 0.007 3.993 22 C -0.019 4.019 23 C -0.179 4.179 24 C 0.147 3.853 25 N -0.325 5.325 26 N -0.243 5.243 27 C -0.117 4.117 28 C -0.125 4.125 29 C -0.120 4.120 30 C -0.093 4.093 31 H 0.251 0.749 32 H 0.372 0.628 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.161 0.839 37 H 0.192 0.808 38 H 0.196 0.804 39 H 0.198 0.802 40 H 0.240 0.760 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -34.455 0.563 34.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.063 3.937 11 H 0.094 0.906 12 C -0.215 4.215 13 C 0.051 3.949 14 H 0.088 0.912 15 N -0.352 5.352 16 C 0.366 3.634 17 O -0.472 6.472 18 C -0.193 4.193 19 C -0.116 4.116 20 C -0.198 4.198 21 C -0.106 4.106 22 C -0.045 4.045 23 C -0.202 4.202 24 C -0.043 4.043 25 N -0.136 5.136 26 N -0.006 5.006 27 C -0.119 4.119 28 C -0.163 4.163 29 C -0.158 4.158 30 C -0.131 4.131 31 H 0.059 0.941 32 H 0.204 0.796 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.258 0.742 36 H 0.178 0.822 37 H 0.209 0.791 38 H 0.213 0.787 39 H 0.215 0.785 40 H 0.256 0.744 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.984 -32.591 0.666 33.142 hybrid contribution -0.410 0.829 -0.537 1.070 sum 5.574 -31.761 0.128 32.247 Atomic orbital electron populations 1.69853 1.06817 1.26069 1.59408 1.25631 0.96357 1.01305 1.03647 0.85092 0.77838 0.79268 0.77261 1.21811 1.22222 1.18855 1.19686 0.91608 0.84898 1.41130 0.90110 1.42239 1.05259 1.00438 1.87225 1.21012 0.95089 0.84330 0.93276 0.90560 1.24187 0.97415 0.99405 1.00508 1.21863 0.97553 0.80805 0.94708 0.91250 1.46059 1.46207 1.09629 1.33340 1.16297 0.79536 0.87062 0.80553 1.90844 1.46572 1.54595 1.55159 1.19256 1.08322 0.87196 1.04494 1.21548 0.98648 0.95489 0.95924 1.21442 1.02106 0.95292 1.00965 1.20165 1.03664 0.87794 0.99003 1.21519 0.91927 0.96277 0.94806 1.22045 1.00308 1.00491 0.97308 1.24996 0.93630 0.88080 0.97566 1.75456 1.06668 1.29099 1.02398 1.45774 1.27140 1.07427 1.20232 1.23383 0.98481 0.97740 0.92285 1.22589 0.97704 0.98195 0.97807 1.22725 0.96746 0.94853 1.01432 1.22544 0.97286 0.95827 0.97438 0.94071 0.79639 0.94313 0.88819 0.74196 0.82153 0.79121 0.78726 0.78459 0.74432 0.90237 0.94089 0.91283 0.89184 0.90317 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.46 13.06 21.65 0.28 -62.17 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.85 29.55 68.60 2.03 49.88 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.24 -13.93 9.98 84.03 0.84 -13.09 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.71 -38.31 5.13 -321.56 -1.65 -39.96 16 10 C 0.17 7.36 4.35 45.28 0.20 7.55 16 11 H 0.08 3.05 8.12 -2.39 -0.02 3.03 16 12 C -0.17 -7.07 7.68 31.23 0.24 -6.83 16 13 C 0.16 6.26 4.02 45.33 0.18 6.44 16 14 H 0.07 3.42 7.54 -2.38 -0.02 3.40 16 15 N -0.70 -24.50 5.30 -449.75 -2.38 -26.88 16 16 C 0.57 22.30 7.60 85.09 0.65 22.95 16 17 O -0.59 -27.93 16.43 -4.62 -0.08 -28.00 16 18 C -0.08 -2.41 6.84 39.37 0.27 -2.14 16 19 C -0.09 -2.35 10.49 22.46 0.24 -2.11 16 20 C -0.17 -3.05 10.92 22.54 0.25 -2.80 16 21 C 0.01 0.13 6.80 39.20 0.27 0.39 16 22 C -0.02 -0.13 10.12 22.40 0.23 0.10 16 23 C -0.18 -0.57 10.04 22.24 0.22 -0.35 16 24 C 0.15 1.12 11.29 85.29 0.96 2.08 16 25 N -0.33 -6.12 9.68 -57.06 -0.55 -6.67 16 26 N -0.24 -5.81 4.01 -180.11 -0.72 -6.54 16 27 C -0.12 -4.10 0.92 -52.26 -0.05 -4.14 16 28 C -0.13 -4.38 7.44 30.89 0.23 -4.15 16 29 C -0.12 -3.07 8.08 31.23 0.25 -2.82 16 30 C -0.09 -2.34 7.45 30.89 0.23 -2.11 16 31 H 0.25 15.62 8.31 -92.71 -0.77 14.84 16 32 H 0.37 21.88 7.75 -92.71 -0.72 21.16 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 35 H 0.42 12.25 4.26 -92.71 -0.39 11.86 16 36 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 37 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.20 -0.26 8.06 -2.91 -0.02 -0.28 16 39 H 0.20 -1.14 8.06 -2.91 -0.02 -1.16 16 40 H 0.24 -0.43 8.06 -2.91 -0.02 -0.45 16 41 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.72 6.42 -2.38 -0.02 1.71 16 46 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -86.85 381.49 2.50 -84.35 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.09 Total: 41.17 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 5.66 Total: -5.19 kcal Atomic # 7 Polarization: -137.19 SS G_CDS: -5.02 Total: -142.22 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.08 Total: -28.00 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -86.85 2.50 -84.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078742011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.444 kcal (2) G-P(sol) polarization free energy of solvation -86.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds