Wall clock time and date at job start Tue Mar 31 2020 23:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99625 * 2 1 4 4 H 1.48500 * 109.47136 * 269.99953 * 3 2 1 5 5 H 1.48494 * 109.47023 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47069 * 150.00008 * 3 2 1 7 7 C 1.38813 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00219 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99780 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.94727 * 336.40215 * 10 9 7 12 12 C 1.53946 * 113.66405 * 107.81096 * 10 9 7 13 13 C 1.53958 * 87.29612 * 89.73904 * 12 10 9 14 14 H 1.08997 * 113.65995 * 139.20186 * 13 12 10 15 15 N 1.46492 * 113.65816 * 270.25984 * 13 12 10 16 16 C 1.34784 * 119.99952 * 252.18349 * 15 13 12 17 17 O 1.21790 * 119.99734 * 0.02562 * 16 15 13 18 18 C 1.41698 * 119.99881 * 180.02562 * 16 15 13 19 19 C 1.39187 * 125.87064 * 179.69181 * 18 16 15 20 20 C 1.38089 * 107.67603 * 179.87298 * 19 18 16 21 21 C 1.39507 * 107.56811 * 0.38904 * 20 19 18 22 22 C 1.40619 * 132.41740 * 179.79431 * 21 20 19 23 23 C 1.36289 * 119.16069 * 179.97438 * 22 21 20 24 24 C 1.39971 * 120.04347 * 0.02562 * 23 22 21 25 25 N 1.30651 * 120.98688 * 0.02562 * 24 23 22 26 26 N 1.37157 * 108.20442 * 359.75810 * 21 20 19 27 27 C 1.52907 * 86.78205 * 24.73272 * 13 12 10 28 28 C 1.52909 * 121.13536 * 209.38733 * 27 13 12 29 29 C 1.53952 * 86.78252 * 209.38099 * 28 27 13 30 30 C 1.53064 * 121.17777 * 100.75092 * 27 13 12 31 31 H 0.96995 * 119.99980 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00278 * 0.02562 * 9 7 2 33 33 H 1.09000 * 113.57626 * 204.34112 * 12 10 9 34 34 H 1.08997 * 113.57982 * 335.13359 * 12 10 9 35 35 H 0.96995 * 120.00597 * 72.19343 * 15 13 12 36 36 H 1.07996 * 126.16271 * 0.02562 * 19 18 16 37 37 H 1.07995 * 126.21603 * 180.12052 * 20 19 18 38 38 H 1.08005 * 120.41816 * 359.97438 * 22 21 20 39 39 H 1.08005 * 119.98120 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.50721 * 180.02562 * 24 23 22 41 41 H 1.09000 * 113.66588 * 94.90895 * 28 27 13 42 42 H 1.09002 * 113.66049 * 323.84790 * 28 27 13 43 43 H 1.09002 * 113.58142 * 139.33437 * 29 28 27 44 44 H 1.09004 * 113.57653 * 270.05037 * 29 28 27 45 45 H 1.09006 * 113.66264 * 36.13819 * 30 27 13 46 46 H 1.09001 * 113.71778 * 265.03884 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 1 3.0677 -3.5646 -0.4026 12 6 1.9927 -4.4081 1.3404 13 6 0.7243 -5.0994 0.8081 14 1 0.6681 -6.1598 1.0540 15 7 -0.5121 -4.3757 1.1141 16 6 -1.3635 -4.8580 2.0410 17 8 -1.1047 -5.8953 2.6244 18 6 -2.5597 -4.1583 2.3366 19 6 -3.5240 -4.5462 3.2622 20 6 -4.5246 -3.5946 3.2491 21 6 -4.1739 -2.6279 2.3064 22 6 -4.8089 -1.4499 1.8746 23 6 -4.2123 -0.6871 0.9156 24 6 -2.9833 -1.0792 0.3724 25 7 -2.3906 -2.1734 0.7701 26 7 -2.9697 -2.9841 1.7549 27 6 1.2663 -4.8227 -0.5946 28 6 0.3230 -4.6158 -1.7802 29 6 1.4444 -5.1945 -2.6620 30 6 1.9620 -5.9185 -1.4058 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 -0.0023 33 1 2.8275 -5.0908 1.4991 34 1 1.8087 -3.7579 2.1956 35 1 -0.7182 -3.5495 0.6496 36 1 -3.4939 -5.4308 3.8811 37 1 -5.4184 -3.6002 3.8551 38 1 -5.7574 -1.1533 2.2976 39 1 -4.6885 0.2201 0.5738 40 1 -2.5181 -0.4680 -0.3868 41 1 0.1014 -3.5685 -1.9854 42 1 -0.5700 -5.2398 -1.7427 43 1 1.0844 -5.8703 -3.4377 44 1 2.1317 -4.4397 -3.0444 45 1 1.5304 -6.9093 -1.2629 46 1 3.0479 -5.9106 -1.3125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078742012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:24 Heat of formation + Delta-G solvation = 138.513679 kcal Electronic energy + Delta-G solvation = -30844.690811 eV Core-core repulsion = 26931.503533 eV Total energy + Delta-G solvation = -3913.187279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.76499 -40.42758 -38.53806 -36.82494 -35.16062 -33.67493 -33.18975 -31.98211 -30.16860 -29.91159 -28.58890 -25.43968 -25.00845 -24.25047 -24.09324 -23.16543 -22.25200 -21.00204 -20.19857 -19.94758 -18.61386 -17.48206 -17.07963 -16.81699 -15.81773 -15.61532 -15.59505 -15.42202 -15.10736 -14.61675 -14.43340 -14.12571 -13.75673 -13.43894 -13.30000 -12.96232 -12.83641 -12.56311 -12.40612 -12.07135 -12.05695 -11.85541 -11.67284 -11.46632 -11.29943 -10.94334 -10.86281 -10.64513 -10.59324 -10.23601 -10.19162 -10.03413 -9.85504 -9.67232 -9.50757 -9.33909 -8.88608 -8.71945 -8.35975 -7.56612 -7.04692 -5.88732 -3.14922 0.67501 1.24380 2.21986 2.52937 3.35833 3.41651 3.43367 3.44868 3.69173 3.83670 4.41399 4.48899 4.65364 4.82397 4.84070 5.06109 5.07064 5.10425 5.23127 5.30233 5.37401 5.43753 5.48515 5.63336 5.71056 5.85823 5.91163 5.95106 5.97602 6.02666 6.06232 6.07391 6.13508 6.20002 6.23196 6.35991 6.37162 6.43969 6.57023 6.68192 6.75672 6.78452 6.85415 6.94260 7.02063 7.23890 7.63952 7.91759 8.16596 8.31884 8.72762 9.43495 9.99800 10.35776 11.32732 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008127 B = 0.006006 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.308013 B = 4660.672592 C = 6968.524266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.701 5.701 10 C 0.189 3.811 11 H 0.067 0.933 12 C -0.186 4.186 13 C 0.135 3.865 14 H 0.091 0.909 15 N -0.694 5.694 16 C 0.587 3.413 17 O -0.555 6.555 18 C -0.033 4.033 19 C -0.085 4.085 20 C -0.186 4.186 21 C 0.007 3.993 22 C -0.030 4.030 23 C -0.188 4.188 24 C 0.160 3.840 25 N -0.243 5.243 26 N -0.234 5.234 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.134 4.134 30 C -0.106 4.106 31 H 0.250 0.750 32 H 0.387 0.613 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.418 0.582 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.207 0.793 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 -5.209 -0.533 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.342 5.342 10 C 0.076 3.924 11 H 0.085 0.915 12 C -0.228 4.228 13 C 0.030 3.970 14 H 0.109 0.891 15 N -0.349 5.349 16 C 0.376 3.624 17 O -0.435 6.435 18 C -0.150 4.150 19 C -0.110 4.110 20 C -0.211 4.211 21 C -0.107 4.107 22 C -0.057 4.057 23 C -0.211 4.211 24 C -0.032 4.032 25 N -0.051 5.051 26 N 0.004 4.996 27 C -0.133 4.133 28 C -0.163 4.163 29 C -0.171 4.171 30 C -0.144 4.144 31 H 0.060 0.940 32 H 0.224 0.776 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.260 0.740 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.223 0.777 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.602 -6.170 -0.562 9.807 hybrid contribution -0.648 1.995 0.153 2.103 sum -8.249 -4.175 -0.409 9.255 Atomic orbital electron populations 1.69672 1.04953 1.24881 1.58091 1.24634 0.95611 0.97356 1.02829 0.86177 0.78780 0.83734 0.77368 1.21820 1.21943 1.20950 1.19297 0.91169 0.83854 1.42348 0.91058 1.42220 1.05838 0.99257 1.86877 1.20905 0.94578 0.84894 0.91997 0.91542 1.24282 0.96690 1.00272 1.01567 1.21627 0.83899 0.96050 0.95461 0.89062 1.45936 1.20479 1.28105 1.40338 1.15764 0.82090 0.84446 0.80080 1.90795 1.76491 1.23862 1.52321 1.19453 1.00948 0.89482 1.05124 1.21216 0.92119 1.00032 0.97647 1.20934 1.02140 0.95482 1.02593 1.19441 0.90231 0.99263 1.01715 1.20836 0.99450 0.90808 0.94564 1.21581 0.97188 1.02508 0.99829 1.24292 0.91375 0.91043 0.96504 1.75901 1.19988 1.06562 1.02658 1.46182 1.13835 1.15749 1.23822 1.23599 0.98651 0.98825 0.92179 1.22545 0.96213 1.01963 0.95552 1.22753 0.98836 0.99595 0.95931 1.22539 0.99855 0.96663 0.95353 0.94043 0.77650 0.90355 0.91137 0.73973 0.82188 0.83097 0.83224 0.83466 0.77670 0.90370 0.91170 0.92206 0.90077 0.90289 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -23.85 12.21 55.49 0.68 -23.17 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.20 9.97 -15.06 -0.15 -6.35 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -16.87 4.74 -52.99 -0.25 -17.12 16 10 C 0.19 3.85 4.36 -67.48 -0.29 3.56 16 11 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 12 C -0.19 -3.63 7.68 -25.75 -0.20 -3.83 16 13 C 0.14 2.60 4.13 -67.48 -0.28 2.32 16 14 H 0.09 1.73 7.46 -51.93 -0.39 1.34 16 15 N -0.69 -14.37 4.92 -56.23 -0.28 -14.64 16 16 C 0.59 12.32 7.60 -14.94 -0.11 12.21 16 17 O -0.55 -12.34 16.39 5.11 0.08 -12.25 16 18 C -0.03 -0.64 6.84 -83.74 -0.57 -1.21 16 19 C -0.09 -1.35 10.49 -39.28 -0.41 -1.76 16 20 C -0.19 -2.53 10.92 -39.16 -0.43 -2.96 16 21 C 0.01 0.11 6.80 -84.11 -0.57 -0.47 16 22 C -0.03 -0.36 10.11 -39.39 -0.40 -0.75 16 23 C -0.19 -2.28 10.04 -39.63 -0.40 -2.68 16 24 C 0.16 2.56 11.09 -17.40 -0.19 2.37 16 25 N -0.24 -4.63 9.68 30.61 0.30 -4.33 16 26 N -0.23 -4.30 4.01 -8.28 -0.03 -4.33 16 27 C -0.13 -2.28 0.78 -154.63 -0.12 -2.40 16 28 C -0.13 -2.15 7.27 -26.28 -0.19 -2.34 16 29 C -0.13 -1.94 8.08 -25.75 -0.21 -2.15 16 30 C -0.11 -1.51 7.85 -26.20 -0.21 -1.72 16 31 H 0.25 6.16 8.31 -40.82 -0.34 5.83 16 32 H 0.39 9.48 5.14 -40.82 -0.21 9.27 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.42 8.95 3.73 -40.82 -0.15 8.80 16 36 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 37 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.21 3.28 7.41 -52.49 -0.39 2.89 16 41 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -30.77 377.12 -9.82 -40.59 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -6.15 Total: 21.91 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -4.83 Total: -8.49 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.41 Total: -63.59 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.77 -9.82 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078742012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.103 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds