Wall clock time and date at job start Tue Mar 31 2020 23:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99625 * 2 1 4 4 H 1.48500 * 109.47136 * 269.99953 * 3 2 1 5 5 H 1.48494 * 109.47023 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47069 * 150.00008 * 3 2 1 7 7 C 1.38813 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00219 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99780 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.94727 * 336.40215 * 10 9 7 12 12 C 1.53946 * 113.66405 * 107.81096 * 10 9 7 13 13 C 1.53958 * 87.29612 * 89.73904 * 12 10 9 14 14 H 1.08997 * 113.65995 * 139.20186 * 13 12 10 15 15 N 1.46492 * 113.65816 * 270.25984 * 13 12 10 16 16 C 1.34784 * 119.99952 * 252.18349 * 15 13 12 17 17 O 1.21790 * 119.99734 * 0.02562 * 16 15 13 18 18 C 1.41698 * 119.99881 * 180.02562 * 16 15 13 19 19 C 1.39187 * 125.87064 * 179.69181 * 18 16 15 20 20 C 1.38089 * 107.67603 * 179.87298 * 19 18 16 21 21 C 1.39507 * 107.56811 * 0.38904 * 20 19 18 22 22 C 1.40619 * 132.41740 * 179.79431 * 21 20 19 23 23 C 1.36289 * 119.16069 * 179.97438 * 22 21 20 24 24 C 1.39971 * 120.04347 * 0.02562 * 23 22 21 25 25 N 1.30651 * 120.98688 * 0.02562 * 24 23 22 26 26 N 1.37157 * 108.20442 * 359.75810 * 21 20 19 27 27 C 1.52907 * 86.78205 * 24.73272 * 13 12 10 28 28 C 1.52909 * 121.13536 * 209.38733 * 27 13 12 29 29 C 1.53952 * 86.78252 * 209.38099 * 28 27 13 30 30 C 1.53064 * 121.17777 * 100.75092 * 27 13 12 31 31 H 0.96995 * 119.99980 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00278 * 0.02562 * 9 7 2 33 33 H 1.09000 * 113.57626 * 204.34112 * 12 10 9 34 34 H 1.08997 * 113.57982 * 335.13359 * 12 10 9 35 35 H 0.96995 * 120.00597 * 72.19343 * 15 13 12 36 36 H 1.07996 * 126.16271 * 0.02562 * 19 18 16 37 37 H 1.07995 * 126.21603 * 180.12052 * 20 19 18 38 38 H 1.08005 * 120.41816 * 359.97438 * 22 21 20 39 39 H 1.08005 * 119.98120 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.50721 * 180.02562 * 24 23 22 41 41 H 1.09000 * 113.66588 * 94.90895 * 28 27 13 42 42 H 1.09002 * 113.66049 * 323.84790 * 28 27 13 43 43 H 1.09002 * 113.58142 * 139.33437 * 29 28 27 44 44 H 1.09004 * 113.57653 * 270.05037 * 29 28 27 45 45 H 1.09006 * 113.66264 * 36.13819 * 30 27 13 46 46 H 1.09001 * 113.71778 * 265.03884 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 1 3.0677 -3.5646 -0.4026 12 6 1.9927 -4.4081 1.3404 13 6 0.7243 -5.0994 0.8081 14 1 0.6681 -6.1598 1.0540 15 7 -0.5121 -4.3757 1.1141 16 6 -1.3635 -4.8580 2.0410 17 8 -1.1047 -5.8953 2.6244 18 6 -2.5597 -4.1583 2.3366 19 6 -3.5240 -4.5462 3.2622 20 6 -4.5246 -3.5946 3.2491 21 6 -4.1739 -2.6279 2.3064 22 6 -4.8089 -1.4499 1.8746 23 6 -4.2123 -0.6871 0.9156 24 6 -2.9833 -1.0792 0.3724 25 7 -2.3906 -2.1734 0.7701 26 7 -2.9697 -2.9841 1.7549 27 6 1.2663 -4.8227 -0.5946 28 6 0.3230 -4.6158 -1.7802 29 6 1.4444 -5.1945 -2.6620 30 6 1.9620 -5.9185 -1.4058 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 -0.0023 33 1 2.8275 -5.0908 1.4991 34 1 1.8087 -3.7579 2.1956 35 1 -0.7182 -3.5495 0.6496 36 1 -3.4939 -5.4308 3.8811 37 1 -5.4184 -3.6002 3.8551 38 1 -5.7574 -1.1533 2.2976 39 1 -4.6885 0.2201 0.5738 40 1 -2.5181 -0.4680 -0.3868 41 1 0.1014 -3.5685 -1.9854 42 1 -0.5700 -5.2398 -1.7427 43 1 1.0844 -5.8703 -3.4377 44 1 2.1317 -4.4397 -3.0444 45 1 1.5304 -6.9093 -1.2629 46 1 3.0479 -5.9106 -1.3125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078742012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:23 Heat of formation + Delta-G solvation = 120.494880 kcal Electronic energy + Delta-G solvation = -30845.472165 eV Core-core repulsion = 26931.503533 eV Total energy + Delta-G solvation = -3913.968632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.98651 -41.89358 -40.01093 -38.02952 -36.66159 -35.40556 -34.46845 -33.53568 -31.74060 -31.36486 -29.84137 -26.80444 -26.57776 -25.68554 -25.48746 -24.54535 -23.71235 -22.30503 -21.50766 -21.39514 -20.09683 -19.10771 -18.64533 -18.08040 -17.18271 -16.92280 -16.87546 -16.73424 -16.58369 -16.21570 -15.93238 -15.64935 -15.35419 -14.88451 -14.69016 -14.47001 -14.08642 -13.90026 -13.68988 -13.49171 -13.28901 -13.13859 -13.09428 -12.92148 -12.83467 -12.72377 -12.56611 -12.16814 -11.96696 -11.82179 -11.67488 -11.44192 -11.32066 -11.25226 -11.02562 -10.88876 -10.66931 -10.01492 -9.84622 -8.94473 -8.75967 -7.86479 -5.14618 -0.38797 -0.00882 1.00535 1.29384 1.48409 1.49171 1.55675 2.21463 2.28803 2.46069 2.57432 3.25990 3.38599 3.40470 3.62897 3.66476 3.75905 3.85790 3.90753 3.96944 4.02407 4.05170 4.16049 4.29436 4.40431 4.52045 4.56938 4.61181 4.75836 4.78973 4.81264 4.85892 4.86360 4.94153 5.04184 5.05945 5.08736 5.15759 5.17525 5.18743 5.25091 5.52466 5.55521 5.58424 5.65496 5.72994 5.78698 6.35161 6.54367 6.77255 7.15888 7.42168 8.12159 8.41241 9.33822 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008127 B = 0.006006 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.308013 B = 4660.672592 C = 6968.524266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.053 4.053 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.713 5.713 10 C 0.175 3.825 11 H 0.069 0.931 12 C -0.180 4.180 13 C 0.129 3.871 14 H 0.093 0.907 15 N -0.701 5.701 16 C 0.579 3.421 17 O -0.583 6.583 18 C -0.090 4.090 19 C -0.083 4.083 20 C -0.170 4.170 21 C -0.002 4.002 22 C -0.019 4.019 23 C -0.184 4.184 24 C 0.151 3.849 25 N -0.294 5.294 26 N -0.247 5.247 27 C -0.123 4.123 28 C -0.128 4.128 29 C -0.122 4.122 30 C -0.091 4.091 31 H 0.252 0.748 32 H 0.383 0.617 33 H 0.108 0.892 34 H 0.034 0.966 35 H 0.414 0.586 36 H 0.173 0.827 37 H 0.197 0.803 38 H 0.203 0.797 39 H 0.190 0.810 40 H 0.197 0.803 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 -4.994 -0.576 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.354 5.354 10 C 0.064 3.936 11 H 0.087 0.913 12 C -0.221 4.221 13 C 0.023 3.977 14 H 0.111 0.889 15 N -0.355 5.355 16 C 0.370 3.630 17 O -0.466 6.466 18 C -0.205 4.205 19 C -0.109 4.109 20 C -0.194 4.194 21 C -0.116 4.116 22 C -0.045 4.045 23 C -0.207 4.207 24 C -0.039 4.039 25 N -0.104 5.104 26 N -0.009 5.009 27 C -0.125 4.125 28 C -0.166 4.166 29 C -0.159 4.159 30 C -0.129 4.129 31 H 0.061 0.939 32 H 0.218 0.782 33 H 0.126 0.874 34 H 0.053 0.947 35 H 0.256 0.744 36 H 0.191 0.809 37 H 0.214 0.786 38 H 0.220 0.780 39 H 0.207 0.793 40 H 0.214 0.786 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.314 -5.968 -0.622 11.079 hybrid contribution -0.210 2.020 0.184 2.040 sum -9.524 -3.948 -0.438 10.319 Atomic orbital electron populations 1.69787 1.05341 1.25353 1.57733 1.25301 0.96672 0.99657 1.03138 0.85294 0.77500 0.80546 0.77072 1.21525 1.22129 1.21202 1.19515 0.91227 0.85162 1.42992 0.91523 1.42304 1.05789 0.99987 1.87274 1.21087 0.94837 0.84632 0.93031 0.91320 1.24251 0.98187 1.00146 0.99558 1.21751 0.83383 0.95857 0.96689 0.88856 1.46080 1.20934 1.28082 1.40394 1.16161 0.82807 0.84391 0.79666 1.90737 1.77434 1.25008 1.53379 1.19533 1.01816 0.91147 1.08018 1.21542 0.91845 1.00833 0.96669 1.21441 1.02575 0.93605 1.01826 1.20290 0.89267 1.00567 1.01484 1.21466 1.00699 0.88786 0.93505 1.21966 0.95465 1.03869 0.99354 1.24471 0.92928 0.90259 0.96287 1.75806 1.22058 1.08143 1.04378 1.46187 1.14939 1.15666 1.24121 1.23542 0.98639 0.98751 0.91593 1.22525 0.97253 1.00197 0.96631 1.22702 0.97143 0.99611 0.96470 1.22579 1.00778 0.96228 0.93357 0.93910 0.78161 0.87407 0.94710 0.74387 0.80931 0.78558 0.77978 0.79254 0.78621 0.93697 0.90911 0.89526 0.90621 0.88282 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.37 12.21 21.65 0.26 -49.11 16 2 C -0.05 -2.85 5.50 84.86 0.47 -2.38 16 3 Si 0.97 44.29 29.55 68.60 2.03 46.31 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.26 -14.03 9.97 84.03 0.84 -13.19 16 8 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 9 N -0.71 -35.94 4.74 -321.55 -1.52 -37.46 16 10 C 0.18 7.38 4.36 45.28 0.20 7.58 16 11 H 0.07 2.81 8.10 -2.38 -0.02 2.79 16 12 C -0.18 -7.26 7.68 31.23 0.24 -7.02 16 13 C 0.13 5.12 4.13 45.29 0.19 5.30 16 14 H 0.09 3.63 7.46 -2.39 -0.02 3.61 16 15 N -0.70 -30.80 4.92 -450.00 -2.21 -33.01 16 16 C 0.58 25.69 7.60 85.09 0.65 26.34 16 17 O -0.58 -27.21 16.39 -4.64 -0.08 -27.28 16 18 C -0.09 -3.56 6.84 39.37 0.27 -3.29 16 19 C -0.08 -2.60 10.49 22.46 0.24 -2.37 16 20 C -0.17 -4.17 10.92 22.54 0.25 -3.92 16 21 C 0.00 -0.06 6.80 39.20 0.27 0.21 16 22 C -0.02 -0.37 10.11 22.40 0.23 -0.15 16 23 C -0.18 -4.01 10.04 22.24 0.22 -3.79 16 24 C 0.15 4.91 11.09 85.29 0.95 5.85 16 25 N -0.29 -11.70 9.68 -57.06 -0.55 -12.25 16 26 N -0.25 -9.25 4.01 -180.11 -0.72 -9.97 16 27 C -0.12 -4.36 0.78 -52.26 -0.04 -4.40 16 28 C -0.13 -4.50 7.27 30.89 0.22 -4.27 16 29 C -0.12 -3.36 8.08 31.23 0.25 -3.11 16 30 C -0.09 -2.43 7.85 30.94 0.24 -2.19 16 31 H 0.25 12.64 8.31 -92.71 -0.77 11.87 16 32 H 0.38 19.84 5.14 -92.71 -0.48 19.37 16 33 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 18.95 3.73 -92.71 -0.35 18.61 16 36 H 0.17 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.20 2.89 8.06 -2.91 -0.02 2.86 16 38 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.19 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.20 6.53 7.41 -2.91 -0.02 6.51 16 41 H 0.04 1.86 7.58 -2.39 -0.02 1.85 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 45 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 46 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -72.08 377.12 3.07 -69.01 By element: Atomic # 1 Polarization: 58.38 SS G_CDS: 0.20 Total: 58.58 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.67 Total: -4.81 kcal Atomic # 7 Polarization: -137.06 SS G_CDS: -4.75 Total: -141.81 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.08 Total: -27.28 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.08 3.07 -69.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078742012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.504 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds