Wall clock time and date at job start Tue Mar 31 2020 23:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34783 * 120.00365 * 2 1 4 4 O 1.21276 * 120.00338 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99521 * 359.97438 * 3 2 1 6 6 C 1.53000 * 117.50286 * 248.74474 * 5 3 2 7 7 C 1.52998 * 117.49778 * 180.08461 * 5 3 2 8 8 C 1.46502 * 120.00132 * 180.02562 * 2 1 3 9 9 H 1.09000 * 108.31638 * 182.38520 * 8 2 1 10 10 C 1.52571 * 108.51355 * 64.76386 * 8 2 1 11 11 C 1.50807 * 109.28309 * 153.75168 * 10 8 2 12 12 C 1.53957 * 110.13086 * 91.98895 * 11 10 8 13 13 N 1.47600 * 112.07098 * 319.30933 * 12 11 10 14 14 C 1.34778 * 118.64330 * 137.93711 * 13 12 11 15 15 O 1.21281 * 119.99922 * 179.97438 * 14 13 12 16 16 C 1.50699 * 120.00271 * 359.97438 * 14 13 12 17 17 S 1.80993 * 109.47390 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99984 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99912 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99974 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99762 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47032 * 89.99853 * 22 20 18 24 24 H 1.48498 * 109.47683 * 210.00242 * 22 20 18 25 25 H 1.48505 * 109.47117 * 330.00513 * 22 20 18 26 26 C 1.44577 * 122.71581 * 317.90875 * 13 12 11 27 27 C 1.47099 * 108.50995 * 299.99840 * 8 2 1 28 28 H 1.09002 * 109.47471 * 270.00255 * 1 2 3 29 29 H 1.09002 * 109.47125 * 29.99620 * 1 2 3 30 30 H 1.08996 * 109.47312 * 149.99976 * 1 2 3 31 31 H 1.09007 * 115.55112 * 34.42254 * 5 3 2 32 32 H 1.09003 * 117.49143 * 0.02562 * 6 5 3 33 33 H 1.08999 * 117.50015 * 145.02036 * 6 5 3 34 34 H 1.08998 * 117.50627 * 214.98322 * 7 5 3 35 35 H 1.09008 * 117.49747 * 359.97438 * 7 5 3 36 36 H 1.09007 * 109.48412 * 273.70665 * 10 8 2 37 37 H 1.08998 * 109.48673 * 33.76902 * 10 8 2 38 38 H 1.09003 * 109.42039 * 331.74664 * 11 10 8 39 39 H 1.09001 * 109.28554 * 212.14434 * 11 10 8 40 40 H 1.09002 * 108.94969 * 198.66447 * 12 11 10 41 41 H 1.08999 * 108.94520 * 79.94756 * 12 11 10 42 42 H 1.08999 * 109.47045 * 300.00717 * 16 14 13 43 43 H 1.09002 * 109.46615 * 60.00105 * 16 14 13 44 44 H 0.97010 * 119.99840 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.45373 * 210.77001 * 26 13 12 46 46 H 1.09011 * 109.45007 * 330.71886 * 26 13 12 47 47 H 1.09003 * 109.32785 * 63.79558 * 27 8 2 48 48 H 1.08998 * 109.32850 * 304.31769 * 27 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 1.4586 3.3299 -1.2655 7 6 2.2075 3.7627 -0.0026 8 6 2.1975 -1.2687 -0.0006 9 1 3.2641 -1.0484 0.0426 10 6 1.9055 -1.9961 -1.3096 11 6 3.0584 -2.9108 -1.6389 12 6 2.8027 -4.3147 -1.0609 13 7 2.2084 -4.2589 0.2890 14 6 1.2091 -5.1114 0.5907 15 8 0.7033 -5.0872 1.6927 16 6 0.7201 -6.0947 -0.4413 17 16 -0.6176 -7.0914 0.2610 18 6 -0.9879 -8.1224 -1.1190 19 1 -0.4339 -8.0122 -2.0395 20 6 -1.9910 -9.0769 -1.0228 21 7 -2.6659 -9.2115 0.0993 22 14 -2.3832 -10.1705 -2.4855 23 1 -1.5508 -11.3987 -2.4226 24 1 -3.8201 -10.5441 -2.4532 25 1 -2.0903 -9.4381 -3.7437 26 6 2.6545 -3.3280 1.3013 27 6 1.8270 -2.0224 1.2071 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.4475 2.4740 0.5550 32 1 2.0516 2.9498 -2.0975 33 1 0.5691 3.8959 -1.5420 34 1 1.8104 4.6134 0.5513 35 1 3.2934 3.6676 -0.0030 36 1 0.9933 -2.5834 -1.2036 37 1 1.7782 -1.2673 -2.1100 38 1 3.9759 -2.5058 -1.2118 39 1 3.1654 -2.9797 -2.7214 40 1 3.7486 -4.8539 -1.0092 41 1 2.1250 -4.8524 -1.7240 42 1 0.3508 -5.5536 -1.3124 43 1 1.5412 -6.7466 -0.7397 44 1 -3.3667 -9.8789 0.1667 45 1 2.5203 -3.7724 2.2876 46 1 3.7092 -3.1007 1.1460 47 1 0.7662 -2.2698 1.1668 48 1 2.0186 -1.4095 2.0878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078765927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:41 Heat of formation + Delta-G solvation = -59.874720 kcal Electronic energy + Delta-G solvation = -27935.608980 eV Core-core repulsion = 24116.970135 eV Total energy + Delta-G solvation = -3818.638845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83912 -40.92167 -38.87887 -37.09470 -36.56416 -34.57720 -33.92037 -33.64585 -30.86620 -28.08076 -27.74033 -27.50958 -26.63413 -24.70955 -23.32856 -23.00401 -21.29519 -20.34624 -20.02057 -19.36139 -18.61874 -18.18348 -17.46275 -17.13533 -16.87323 -16.73417 -16.49107 -15.98673 -15.69538 -15.51500 -15.10903 -14.92080 -14.60806 -14.52877 -14.40080 -14.08153 -13.75389 -13.56878 -13.55419 -13.22489 -13.16241 -13.06868 -12.88607 -12.64291 -12.49431 -12.44351 -12.39017 -12.03850 -11.82934 -11.75804 -11.64817 -11.54270 -11.41644 -11.13557 -10.83549 -10.82865 -10.24185 -9.83339 -9.60103 -8.65880 -8.33828 -6.11646 1.27244 1.42240 1.42748 1.47188 1.56922 1.58450 1.90699 2.12574 2.28349 2.90686 3.00373 3.24720 3.38590 3.59035 3.69089 3.82896 3.86260 3.94718 3.98458 4.02828 4.08164 4.17142 4.24227 4.26958 4.34432 4.36334 4.47057 4.53451 4.60099 4.62270 4.72754 4.73348 4.84979 4.85998 4.89847 4.94631 5.01978 5.05092 5.11342 5.16763 5.21334 5.26316 5.42692 5.50506 5.67176 6.20403 6.24654 6.33349 7.07600 7.10163 7.17177 8.75240 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.002345 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.375220 B =11938.879072 C =12213.708522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.536 3.464 4 O -0.586 6.586 5 C -0.204 4.204 6 C -0.138 4.138 7 C -0.152 4.152 8 C 0.147 3.853 9 H 0.086 0.914 10 C -0.118 4.118 11 C -0.121 4.121 12 C 0.099 3.901 13 N -0.597 5.597 14 C 0.529 3.471 15 O -0.562 6.562 16 C -0.124 4.124 17 S -0.152 6.152 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.124 3.876 27 C -0.133 4.133 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.054 0.946 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.586 24.081 -6.213 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C 0.326 3.674 4 O -0.466 6.466 5 C -0.225 4.225 6 C -0.176 4.176 7 C -0.190 4.190 8 C 0.045 3.955 9 H 0.104 0.896 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.023 4.023 13 N -0.331 5.331 14 C 0.317 3.683 15 O -0.440 6.440 16 C -0.275 4.275 17 S 0.075 5.925 18 C -0.691 4.691 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.181 1.181 26 C 0.000 4.000 27 C -0.172 4.172 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.163 0.837 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.073 0.927 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.364 24.047 -4.506 26.570 hybrid contribution -0.017 -1.038 -1.418 1.758 sum 10.347 23.008 -5.924 25.914 Atomic orbital electron populations 1.21943 0.77986 1.04364 1.02668 1.48141 1.08084 1.05359 1.72500 1.20279 0.87015 0.85579 0.74492 1.90642 1.15716 1.87844 1.52444 1.22306 1.03342 0.89372 1.07468 1.23031 1.03745 1.00391 0.90394 1.23020 0.98983 0.95651 1.01324 1.20088 0.97675 0.82770 0.95006 0.89574 1.21360 0.99531 0.98632 0.96083 1.21659 0.98296 0.93173 1.02795 1.22320 0.99905 0.98826 0.81216 1.47716 1.35433 1.35204 1.14704 1.20175 0.79399 0.81066 0.87683 1.90681 1.57377 1.71213 1.24748 1.23405 1.02777 1.00047 1.01289 1.85586 1.41950 1.42294 1.22650 1.23182 1.23633 1.22324 0.99995 0.89920 1.26116 0.94736 0.98291 1.00025 1.70188 1.22439 1.34451 1.27694 0.84973 0.77535 0.77956 0.77646 1.19414 1.20373 1.18081 1.21325 0.98848 0.87956 0.91904 1.21407 1.00849 0.96704 0.98231 0.92099 0.88462 0.91136 0.83721 0.89364 0.85073 0.85687 0.89598 0.92315 0.90824 0.90538 0.87970 0.89484 0.89426 0.87455 0.87601 0.92047 0.91189 0.88035 0.92708 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 8.97 127.77 1.15 2.20 16 2 N -0.61 -11.62 2.59 -833.81 -2.16 -13.77 16 3 C 0.54 11.43 7.46 87.66 0.65 12.08 16 4 O -0.59 -16.87 15.55 -3.02 -0.05 -16.92 16 5 C -0.20 -2.85 4.79 -11.54 -0.06 -2.90 16 6 C -0.14 -1.48 10.24 30.62 0.31 -1.16 16 7 C -0.15 -1.95 10.05 30.62 0.31 -1.65 16 8 C 0.15 2.99 1.96 43.01 0.08 3.07 16 9 H 0.09 1.96 6.03 -2.39 -0.01 1.95 16 10 C -0.12 -2.12 4.35 29.74 0.13 -1.99 16 11 C -0.12 -1.78 5.70 30.21 0.17 -1.61 16 12 C 0.10 1.81 5.95 86.49 0.51 2.33 16 13 N -0.60 -15.47 2.24 -818.16 -1.83 -17.30 16 14 C 0.53 19.38 7.63 87.66 0.67 20.05 16 15 O -0.56 -25.69 15.30 -3.03 -0.05 -25.73 16 16 C -0.12 -4.84 4.48 71.24 0.32 -4.52 16 17 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 18 C -0.54 -30.58 9.50 67.95 0.65 -29.93 16 19 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -55.56 13.22 21.65 0.29 -55.28 16 22 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 C 0.12 2.92 5.38 87.37 0.47 3.39 16 27 C -0.13 -3.01 4.88 29.39 0.14 -2.86 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.93 6.64 -2.39 -0.02 0.92 16 30 H 0.07 1.12 7.25 -2.39 -0.02 1.10 16 31 H 0.15 1.38 7.27 -2.38 -0.02 1.37 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.49 7.67 -2.38 -0.02 1.47 16 36 H 0.06 1.25 7.23 -2.38 -0.02 1.24 16 37 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 38 H 0.08 1.08 7.31 -2.39 -0.02 1.06 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.66 5.82 -2.39 -0.01 1.64 16 42 H 0.11 3.76 7.41 -2.40 -0.02 3.75 16 43 H 0.11 3.76 8.03 -2.39 -0.02 3.74 16 44 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 45 H 0.07 1.96 7.30 -2.39 -0.02 1.94 16 46 H 0.10 1.86 8.07 -2.38 -0.02 1.84 16 47 H 0.05 1.48 7.62 -2.39 -0.02 1.46 16 48 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -79.62 391.95 4.00 -75.63 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.95 Total: 20.15 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.98 Total: -2.32 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -3.70 Total: -86.35 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.09 Total: -42.65 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -79.62 4.00 -75.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078765927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.750 kcal (2) G-P(sol) polarization free energy of solvation -79.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds