Wall clock time and date at job start Tue Mar 31 2020 23:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99625 * 2 1 4 4 H 1.48500 * 109.47110 * 239.99904 * 3 2 1 5 5 H 1.48498 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46875 * 120.00124 * 3 2 1 7 7 C 1.38813 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00219 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99780 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.94727 * 336.40215 * 10 9 7 12 12 C 1.53946 * 113.66405 * 107.81096 * 10 9 7 13 13 C 1.53958 * 87.29612 * 89.73904 * 12 10 9 14 14 H 1.08994 * 113.65977 * 270.26062 * 13 12 10 15 15 N 1.46498 * 113.66040 * 139.20611 * 13 12 10 16 16 C 1.34771 * 120.00252 * 107.81515 * 15 13 12 17 17 O 1.21668 * 119.99768 * 359.97438 * 16 15 13 18 18 C 1.46934 * 120.00169 * 179.97438 * 16 15 13 19 19 C 1.36354 * 126.82560 * 359.68235 * 18 16 15 20 20 N 1.35580 * 109.74713 * 179.83057 * 19 18 16 21 21 H 0.96999 * 124.71499 * 180.17911 * 20 19 18 22 22 C 1.37691 * 110.55605 * 0.45273 * 20 19 18 23 23 N 1.32673 * 132.94319 * 179.72551 * 22 20 19 24 24 C 1.31608 * 121.69480 * 180.02562 * 23 22 20 25 25 C 1.38584 * 121.53764 * 0.02562 * 24 23 22 26 26 C 1.38337 * 119.32749 * 0.02562 * 25 24 23 27 27 C 1.39345 * 118.05501 * 359.97438 * 26 25 24 28 28 C 1.52907 * 86.78205 * 24.73272 * 13 12 10 29 29 C 1.52909 * 121.13536 * 209.38733 * 28 13 12 30 30 C 1.53952 * 86.78252 * 209.38099 * 29 28 13 31 31 C 1.53064 * 121.17777 * 100.75092 * 28 13 12 32 32 H 0.96995 * 119.99980 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00278 * 0.02562 * 9 7 2 34 34 H 1.09000 * 113.57626 * 204.34112 * 12 10 9 35 35 H 1.08997 * 113.57982 * 335.13359 * 12 10 9 36 36 H 0.97006 * 119.99739 * 287.80421 * 15 13 12 37 37 H 1.08000 * 125.12364 * 359.97438 * 19 18 16 38 38 H 1.08000 * 119.23238 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.33419 * 179.97438 * 25 24 23 40 40 H 1.08004 * 120.96986 * 179.97438 * 26 25 24 41 41 H 1.09000 * 113.66588 * 94.90895 * 29 28 13 42 42 H 1.09002 * 113.66049 * 323.84790 * 29 28 13 43 43 H 1.09002 * 113.58142 * 139.33437 * 30 29 28 44 44 H 1.09004 * 113.57653 * 270.05037 * 30 29 28 45 45 H 1.09006 * 113.66264 * 36.13819 * 31 28 13 46 46 H 1.09001 * 113.71778 * 265.03884 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 1 3.0677 -3.5646 -0.4026 12 6 1.9927 -4.4081 1.3404 13 6 0.7243 -5.0994 0.8081 14 1 -0.1956 -4.5610 1.0357 15 7 0.6487 -6.5246 1.1387 16 6 -0.2301 -6.9559 2.0649 17 8 -0.9605 -6.1616 2.6269 18 6 -0.3063 -8.3855 2.3960 19 6 0.4364 -9.3911 1.8517 20 7 0.0855 -10.5747 2.4122 21 1 0.4797 -11.4316 2.1859 22 6 -0.9126 -10.3919 3.3430 23 7 -1.5755 -11.2263 4.1332 24 6 -2.5095 -10.8026 4.9580 25 6 -2.8483 -9.4615 5.0421 26 6 -2.1910 -8.5450 4.2409 27 6 -1.2062 -9.0182 3.3761 28 6 1.2663 -4.8227 -0.5946 29 6 0.3230 -4.6158 -1.7802 30 6 1.4444 -5.1945 -2.6620 31 6 1.9620 -5.9185 -1.4058 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0023 34 1 2.8275 -5.0908 1.4991 35 1 1.8087 -3.7579 2.1956 36 1 1.2312 -7.1579 0.6907 37 1 1.1921 -9.2637 1.0907 38 1 -3.0245 -11.5169 5.5833 39 1 -3.6182 -9.1352 5.7256 40 1 -2.4341 -7.4936 4.2845 41 1 0.1014 -3.5685 -1.9854 42 1 -0.5700 -5.2398 -1.7427 43 1 1.0844 -5.8703 -3.4377 44 1 2.1317 -4.4397 -3.0444 45 1 1.5304 -6.9093 -1.2629 46 1 3.0479 -5.9106 -1.3125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078806873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:30 Heat of formation + Delta-G solvation = 95.947395 kcal Electronic energy + Delta-G solvation = -28903.100559 eV Core-core repulsion = 24988.067468 eV Total energy + Delta-G solvation = -3915.033091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.93662 -40.49038 -38.67959 -37.98739 -35.02360 -34.03225 -33.14165 -32.38605 -30.54530 -29.91910 -29.17406 -25.53888 -24.89450 -24.16378 -24.03380 -23.37753 -22.74377 -21.93274 -20.34816 -19.73775 -18.80038 -17.75412 -17.09573 -17.03063 -16.51285 -16.24654 -15.67040 -15.52943 -15.13034 -15.04521 -14.76015 -14.35727 -14.11399 -13.83331 -13.47137 -13.12843 -13.01409 -12.68300 -12.65722 -12.46253 -12.26629 -12.16280 -11.93476 -11.59766 -11.37687 -10.88935 -10.82317 -10.73674 -10.58013 -10.19635 -10.07936 -9.95804 -9.81399 -9.67066 -9.53358 -9.40314 -8.85696 -8.82491 -8.63713 -8.33843 -6.99215 -5.78210 -3.08010 0.63366 1.06224 1.80668 2.33996 3.34518 3.40210 3.43832 3.48372 3.49503 3.73799 4.17186 4.29081 4.48194 4.52537 4.72783 4.78003 4.89607 4.93530 4.96973 5.03002 5.18317 5.19738 5.28235 5.38562 5.46598 5.59764 5.66286 5.79531 5.93492 5.95696 5.98500 6.02109 6.06099 6.08640 6.11280 6.16845 6.25681 6.45119 6.57944 6.58313 6.68064 6.72952 6.80055 6.83922 6.89109 7.11036 7.68289 7.69248 7.75390 8.39828 8.45848 9.50912 10.07167 10.41630 11.43682 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.002523 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.200271 B =11094.764246 C =12142.432223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.700 5.700 10 C 0.197 3.803 11 H 0.068 0.932 12 C -0.182 4.182 13 C 0.141 3.859 14 H 0.115 0.885 15 N -0.712 5.712 16 C 0.583 3.417 17 O -0.537 6.537 18 C -0.209 4.209 19 C 0.112 3.888 20 N -0.567 5.567 21 H 0.423 0.577 22 C 0.276 3.724 23 N -0.499 5.499 24 C 0.135 3.865 25 C -0.198 4.198 26 C -0.016 4.016 27 C -0.110 4.110 28 C -0.124 4.124 29 C -0.125 4.125 30 C -0.133 4.133 31 C -0.115 4.115 32 H 0.257 0.743 33 H 0.387 0.613 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.391 0.609 37 H 0.186 0.814 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -24.675 2.691 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.084 3.916 11 H 0.086 0.914 12 C -0.225 4.225 13 C 0.038 3.962 14 H 0.133 0.867 15 N -0.362 5.362 16 C 0.370 3.630 17 O -0.414 6.414 18 C -0.220 4.220 19 C -0.020 4.020 20 N -0.172 5.172 21 H 0.262 0.738 22 C 0.044 3.956 23 N -0.212 5.212 24 C -0.030 4.030 25 C -0.219 4.219 26 C -0.043 4.043 27 C -0.116 4.116 28 C -0.127 4.127 29 C -0.163 4.163 30 C -0.171 4.171 31 C -0.153 4.153 32 H 0.067 0.933 33 H 0.222 0.778 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.226 0.774 37 H 0.203 0.797 38 H 0.179 0.821 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.113 -24.863 2.973 25.041 hybrid contribution 0.423 0.936 -0.217 1.050 sum 0.536 -23.927 2.756 24.091 Atomic orbital electron populations 1.69654 1.05100 1.25950 1.56923 1.24761 0.95502 0.97736 1.02600 0.86263 0.78527 0.83499 0.77832 1.21253 1.21700 1.21219 1.19194 0.91007 0.83839 1.43541 0.91069 1.42100 1.05824 0.99093 1.86747 1.20630 0.94490 0.84669 0.91842 0.91435 1.24303 0.96434 0.99694 1.02028 1.22409 0.99731 0.79095 0.95003 0.86701 1.45876 1.39270 1.09885 1.41140 1.17207 0.80188 0.86047 0.79524 1.90802 1.42759 1.55893 1.51995 1.20167 1.03836 0.93352 1.04652 1.22137 0.98905 0.83335 0.97602 1.41257 1.32337 1.09859 1.33704 0.73846 1.18341 0.93002 0.90214 0.94065 1.66476 1.09112 1.38491 1.07155 1.22459 0.92045 0.94547 0.93931 1.21991 1.03184 0.94174 1.02568 1.21222 0.91077 1.01179 0.90781 1.19444 0.99526 0.92783 0.99881 1.23653 0.98459 0.98372 0.92186 1.22628 0.96048 1.02447 0.95181 1.22735 0.99048 0.99550 0.95740 1.22550 0.99736 0.96627 0.96414 0.93323 0.77820 0.91296 0.90908 0.77422 0.79707 0.82091 0.84205 0.83559 0.89883 0.91092 0.92353 0.90068 0.90865 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.70 -16.96 4.85 -52.99 -0.26 -17.22 16 10 C 0.20 3.74 4.36 -67.48 -0.29 3.44 16 11 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 12 C -0.18 -3.16 7.68 -25.75 -0.20 -3.36 16 13 C 0.14 2.31 4.03 -67.48 -0.27 2.04 16 14 H 0.12 2.31 7.46 -51.93 -0.39 1.92 16 15 N -0.71 -9.23 5.24 -54.60 -0.29 -9.52 16 16 C 0.58 8.78 7.80 -12.74 -0.10 8.68 16 17 O -0.54 -10.44 15.86 5.22 0.08 -10.36 16 18 C -0.21 -2.54 6.27 -103.36 -0.65 -3.19 16 19 C 0.11 0.88 11.34 -16.57 -0.19 0.69 16 20 N -0.57 -4.46 5.97 -11.97 -0.07 -4.53 16 21 H 0.42 1.96 8.96 -40.82 -0.37 1.59 16 22 C 0.28 3.14 8.41 -155.53 -1.31 1.83 16 23 N -0.50 -5.61 10.39 -12.29 -0.13 -5.74 16 24 C 0.14 1.25 11.15 -17.52 -0.20 1.05 16 25 C -0.20 -1.87 10.10 -39.42 -0.40 -2.26 16 26 C -0.02 -0.20 9.97 -39.13 -0.39 -0.59 16 27 C -0.11 -1.42 6.28 -104.93 -0.66 -2.08 16 28 C -0.12 -1.89 0.92 -154.63 -0.14 -2.04 16 29 C -0.13 -1.97 7.62 -26.28 -0.20 -2.17 16 30 C -0.13 -1.73 8.08 -25.75 -0.21 -1.94 16 31 C -0.12 -1.34 7.16 -26.20 -0.19 -1.52 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.39 10.14 7.62 -40.82 -0.31 9.83 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.39 3.66 5.93 -40.82 -0.24 3.42 16 37 H 0.19 0.63 7.38 -52.49 -0.39 0.24 16 38 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.15 1.90 7.55 -52.48 -0.40 1.51 16 41 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.07 0.68 7.03 -51.93 -0.37 0.31 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -34.80 381.61 -11.04 -45.84 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -6.20 Total: 14.24 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -5.63 Total: -8.55 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.02 Total: -64.07 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.80 -11.04 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078806873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.788 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds