Wall clock time and date at job start Tue Mar 31 2020 23:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08997 * 112.88651 * 334.39012 * 10 9 7 12 12 C 1.53955 * 113.66415 * 105.73736 * 10 9 7 13 13 C 1.54241 * 87.18863 * 89.78569 * 12 10 9 14 14 H 1.09004 * 113.74917 * 139.21693 * 13 12 10 15 15 N 1.46499 * 113.66422 * 270.25974 * 13 12 10 16 16 C 1.34776 * 120.00542 * 252.18815 * 15 13 12 17 17 O 1.21669 * 119.99660 * 359.97438 * 16 15 13 18 18 C 1.46922 * 120.00190 * 180.02562 * 16 15 13 19 19 C 1.36355 * 126.82985 * 0.02562 * 18 16 15 20 20 N 1.35573 * 109.75048 * 180.02562 * 19 18 16 21 21 H 0.97005 * 124.72069 * 179.97438 * 20 19 18 22 22 C 1.37694 * 110.56403 * 0.02562 * 20 19 18 23 23 N 1.32668 * 132.94579 * 180.02562 * 22 20 19 24 24 C 1.31608 * 121.68964 * 179.97438 * 23 22 20 25 25 C 1.38586 * 121.53841 * 0.02661 * 24 23 22 26 26 C 1.38329 * 119.32995 * 359.97348 * 25 24 23 27 27 C 1.39350 * 118.05791 * 359.70241 * 26 25 24 28 28 C 1.52905 * 113.66082 * 203.04543 * 10 9 7 29 29 C 1.52914 * 121.14057 * 144.70758 * 28 10 9 30 30 C 1.53950 * 86.78444 * 209.37767 * 29 28 10 31 31 C 1.52911 * 121.13968 * 36.14398 * 28 10 9 32 32 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 34 34 H 1.09004 * 113.57527 * 204.34301 * 12 10 9 35 35 H 1.08994 * 113.57708 * 335.12760 * 12 10 9 36 36 H 0.97010 * 119.99946 * 72.18486 * 15 13 12 37 37 H 1.08001 * 125.12410 * 0.04248 * 19 18 16 38 38 H 1.08001 * 119.22701 * 180.02562 * 24 23 22 39 39 H 1.08008 * 120.33421 * 179.97438 * 25 24 23 40 40 H 1.08007 * 120.97459 * 179.97438 * 26 25 24 41 41 H 1.09000 * 113.66024 * 323.85226 * 29 28 10 42 42 H 1.08994 * 113.66194 * 94.90621 * 29 28 10 43 43 H 1.08995 * 113.58271 * 270.13143 * 30 29 28 44 44 H 1.08996 * 113.57661 * 139.32983 * 30 29 28 45 45 H 1.09005 * 113.65882 * 265.09435 * 31 28 10 46 46 H 1.08996 * 113.66010 * 36.14620 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0561 -3.5723 -0.4225 12 6 2.0295 -4.3796 1.3663 13 6 0.7454 -5.0823 0.8800 14 1 0.6941 -6.1376 1.1480 15 7 -0.4829 -4.3522 1.2030 16 6 -1.3100 -4.8152 2.1610 17 8 -1.0369 -5.8400 2.7573 18 6 -2.5422 -4.0832 2.4845 19 6 -2.9828 -2.9292 1.9071 20 7 -4.1586 -2.5557 2.4692 21 1 -4.6632 -1.7652 2.2210 22 6 -4.5366 -3.4538 3.4420 23 7 -5.5845 -3.5201 4.2530 24 6 -5.7274 -4.5007 5.1190 25 6 -4.7887 -5.5145 5.2278 26 6 -3.6750 -5.4975 4.4076 27 6 -3.5496 -4.4526 3.4941 28 6 1.2512 -4.8341 -0.5416 29 6 1.9236 -5.9464 -1.3471 30 6 0.5768 -6.1158 -2.0734 31 6 0.2776 -4.6509 -1.7064 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 2.8684 -5.0592 1.5163 35 1 1.8690 -3.7113 2.2122 36 1 -0.7008 -3.5352 0.7273 37 1 -2.4723 -2.3937 1.1204 38 1 -6.5966 -4.5157 5.7599 39 1 -4.9254 -6.3097 5.9458 40 1 -2.9267 -6.2738 4.4701 41 1 2.7277 -5.5939 -1.9931 42 1 2.2085 -6.8103 -0.7467 43 1 -0.0909 -6.8308 -1.5927 44 1 0.6778 -6.2848 -3.1454 45 1 -0.7523 -4.4799 -1.3930 46 1 0.6191 -3.9343 -2.4533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078806877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:37 Heat of formation + Delta-G solvation = 97.000413 kcal Electronic energy + Delta-G solvation = -29733.303675 eV Core-core repulsion = 25818.316246 eV Total energy + Delta-G solvation = -3914.987429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.65867 -40.54829 -38.46920 -37.73601 -35.27628 -33.63660 -32.91498 -32.31090 -30.29902 -29.89223 -29.10300 -25.49859 -24.86674 -24.13067 -23.75188 -23.46740 -22.48077 -21.90879 -20.16543 -19.56511 -18.62139 -17.87920 -17.24773 -16.70911 -16.10296 -16.00289 -15.45264 -15.31052 -15.19159 -14.77899 -14.59272 -14.41319 -14.05715 -13.79545 -13.28822 -13.06230 -12.93966 -12.88399 -12.51485 -12.37813 -12.10266 -12.00512 -11.90581 -11.54797 -11.41160 -11.00985 -10.91806 -10.68831 -10.36293 -10.23790 -10.11287 -9.90854 -9.80354 -9.68810 -9.36470 -9.30164 -8.92755 -8.58071 -8.52278 -8.06632 -7.10312 -5.95493 -3.21444 0.91277 1.28859 2.08309 2.67692 3.34275 3.41104 3.42416 3.46011 3.62264 3.96004 4.43097 4.46178 4.68481 4.75459 4.76791 4.93484 4.96611 5.01003 5.14397 5.15846 5.30377 5.37792 5.40177 5.45172 5.52214 5.64210 5.82901 5.85464 5.87954 5.97133 6.02420 6.09452 6.13148 6.22495 6.26812 6.31989 6.34942 6.38608 6.43586 6.61427 6.71088 6.74388 6.83685 6.95580 7.11092 7.17155 7.60778 7.92744 7.97336 8.26023 8.63912 9.37093 9.91848 10.25972 11.28270 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.003975 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.135499 B = 7042.230730 C = 9102.524224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.074 0.926 9 N -0.700 5.700 10 C 0.179 3.821 11 H 0.065 0.935 12 C -0.186 4.186 13 C 0.154 3.846 14 H 0.093 0.907 15 N -0.696 5.696 16 C 0.594 3.406 17 O -0.554 6.554 18 C -0.224 4.224 19 C 0.137 3.863 20 N -0.564 5.564 21 H 0.425 0.575 22 C 0.274 3.726 23 N -0.497 5.497 24 C 0.130 3.870 25 C -0.201 4.201 26 C -0.020 4.020 27 C -0.105 4.105 28 C -0.132 4.132 29 C -0.104 4.104 30 C -0.142 4.142 31 C -0.116 4.116 32 H 0.255 0.745 33 H 0.378 0.622 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.404 0.596 37 H 0.196 0.804 38 H 0.160 0.840 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -10.751 2.591 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.092 0.908 9 N -0.339 5.339 10 C 0.067 3.933 11 H 0.083 0.917 12 C -0.228 4.228 13 C 0.048 3.952 14 H 0.111 0.889 15 N -0.348 5.348 16 C 0.382 3.618 17 O -0.434 6.434 18 C -0.235 4.235 19 C 0.004 3.996 20 N -0.168 5.168 21 H 0.264 0.736 22 C 0.042 3.958 23 N -0.210 5.210 24 C -0.036 4.036 25 C -0.222 4.222 26 C -0.046 4.046 27 C -0.112 4.112 28 C -0.134 4.134 29 C -0.142 4.142 30 C -0.179 4.179 31 C -0.153 4.153 32 H 0.064 0.936 33 H 0.213 0.787 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.242 0.758 37 H 0.213 0.787 38 H 0.177 0.823 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.565 -10.492 2.859 13.247 hybrid contribution 0.405 1.264 -0.189 1.341 sum -7.160 -9.227 2.670 11.981 Atomic orbital electron populations 1.69596 1.05133 1.25695 1.58191 1.24667 0.95577 0.97643 1.02745 0.86094 0.78920 0.83893 0.77136 1.20522 1.21879 1.21918 1.19346 0.91269 0.83755 1.42290 0.90828 1.42081 1.05158 0.99460 1.87240 1.21060 0.94784 0.85068 0.92413 0.91720 1.24337 0.96325 1.00230 1.01917 1.21447 0.83960 0.95931 0.93827 0.88947 1.45553 1.22167 1.28434 1.38617 1.17092 0.81689 0.83809 0.79184 1.90713 1.75564 1.25014 1.52080 1.19976 0.98938 0.99863 1.04679 1.22528 0.85319 0.94838 0.96965 1.41352 1.20513 1.23816 1.31094 0.73625 1.18374 0.93141 0.90894 0.93373 1.66460 1.21565 1.26635 1.06309 1.22400 0.98330 0.88780 0.94053 1.21921 0.96191 1.01552 1.02578 1.21127 0.96525 0.95944 0.91024 1.19430 0.95586 0.97027 0.99135 1.23424 0.98575 0.98399 0.92998 1.22480 0.96735 0.97097 0.97891 1.22858 0.97585 0.97714 0.99742 1.22508 0.98945 0.95996 0.97868 0.93552 0.78723 0.90480 0.90917 0.75775 0.78692 0.82318 0.84510 0.83883 0.89683 0.91619 0.90736 0.91977 0.92045 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -25.02 13.06 55.49 0.72 -24.30 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.00 9.97 -15.06 -0.15 -6.15 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.70 -15.56 4.97 -52.99 -0.26 -15.83 16 10 C 0.18 3.30 4.35 -67.48 -0.29 3.01 16 11 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 12 C -0.19 -3.25 7.70 -25.59 -0.20 -3.44 16 13 C 0.15 2.54 4.13 -67.33 -0.28 2.26 16 14 H 0.09 1.55 7.46 -51.93 -0.39 1.16 16 15 N -0.70 -11.76 4.68 -54.45 -0.25 -12.02 16 16 C 0.59 10.58 7.80 -12.75 -0.10 10.48 16 17 O -0.55 -11.08 15.85 5.22 0.08 -10.99 16 18 C -0.22 -3.62 6.27 -103.36 -0.65 -4.27 16 19 C 0.14 1.90 11.34 -16.58 -0.19 1.71 16 20 N -0.56 -7.23 5.97 -11.97 -0.07 -7.30 16 21 H 0.43 4.27 8.96 -40.82 -0.37 3.90 16 22 C 0.27 4.07 8.41 -155.53 -1.31 2.76 16 23 N -0.50 -6.96 10.39 -12.29 -0.13 -7.09 16 24 C 0.13 1.47 11.15 -17.52 -0.20 1.27 16 25 C -0.20 -2.24 10.10 -39.42 -0.40 -2.63 16 26 C -0.02 -0.28 9.97 -39.13 -0.39 -0.67 16 27 C -0.10 -1.66 6.28 -104.92 -0.66 -2.31 16 28 C -0.13 -2.02 0.78 -154.71 -0.12 -2.14 16 29 C -0.10 -1.33 7.84 -26.28 -0.21 -1.54 16 30 C -0.14 -1.77 8.08 -25.75 -0.21 -1.98 16 31 C -0.12 -1.72 7.24 -26.28 -0.19 -1.91 16 32 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.38 8.48 5.33 -40.82 -0.22 8.26 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.40 6.93 4.85 -40.82 -0.20 6.73 16 37 H 0.20 2.51 7.38 -52.49 -0.39 2.13 16 38 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.14 2.01 7.55 -52.48 -0.40 1.61 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.93 7.58 -51.93 -0.39 0.53 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -30.80 379.20 -10.96 -41.76 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -6.12 Total: 19.85 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -5.63 Total: -5.93 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.01 Total: -66.53 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.80 -10.96 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078806877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.763 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds